genome.fa.s11.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  114  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34804647--34804709	11	5.5	11	79	5	72	39	7	0	52	1.31
34804894--34804953	20	3.0	20	90	2	93	21	45	15	18	1.86
34805840--34805874	16	2.3	15	86	13	54	11	22	25	40	1.88
34806649--34806792	30	4.7	30	85	2	180	36	25	2	36	1.70
34806774--34807236	59	7.9	59	86	0	606	31	26	5	36	1.79
34806774--34807236	178	2.6	178	89	3	677	31	26	5	36	1.79
34812360--34812394	16	2.3	15	86	13	54	11	22	25	40	1.88
34813169--34813344	30	5.8	30	82	2	217	36	22	3	36	1.73
34813324--34813725	29	13.7	30	64	21	122	32	27	4	35	1.77
34813324--34813726	59	6.9	59	88	0	576	32	27	4	35	1.78
34820197--34820230	17	2.0	17	94	0	59	8	8	23	58	1.56
34820623--34820662	20	2.0	20	85	5	53	27	10	12	50	1.72
34822442--34822496	17	3.6	16	70	25	55	69	9	0	21	1.16
34822439--34822495	29	2.0	29	92	0	96	68	8	0	22	1.17
34826495--34826520	12	2.2	12	100	0	52	69	0	0	30	0.89
34827413--34827451	20	1.9	21	89	5	62	51	2	10	35	1.50
34854041--34854101	29	2.1	30	84	6	81	37	1	16	44	1.58
34860183--34860221	11	3.7	11	86	6	55	71	0	0	28	0.86
34875579--34875630	27	1.9	27	84	0	68	65	7	1	25	1.30
34875604--34875633	15	1.9	16	93	6	53	70	10	0	20	1.16
34880283--34880351	16	4.3	16	71	18	63	65	1	27	5	1.24
34888802--34888840	15	2.4	16	87	8	53	79	2	2	15	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34888834--34888888	27	2.0	27	85	0	74	58	5	29	7	1.48
34888890--34888928	21	1.9	19	90	10	60	76	2	7	12	1.09
34899679--34899769	40	2.3	40	88	0	128	21	27	8	41	1.83
34899795--34899901	41	2.5	40	83	8	124	29	19	12	38	1.88
34900849--34900957	23	4.7	23	74	0	92	41	20	21	17	1.91
34900844--34900947	46	2.3	46	82	0	127	43	20	19	17	1.88
34906322--34906349	3	9.3	3	100	0	56	32	0	0	67	0.91
34909162--34909198	3	12.3	3	100	0	74	32	0	0	67	0.91
34917565--34917595	3	10.3	3	100	0	62	67	0	0	32	0.91
34932632--34932659	13	2.2	13	100	0	56	21	14	35	28	1.92
34950327--34950365	21	1.9	21	89	5	62	35	10	2	51	1.50
34955542--34955576	17	2.2	15	90	10	52	42	0	0	57	0.99
34957775--34957867	17	5.8	17	69	20	65	63	3	2	31	1.22
34959102--34959156	4	13.8	4	77	11	51	65	0	29	5	1.15
34959510--34959597	43	2.0	43	93	0	149	35	1	18	45	1.57
34959507--34959580	21	3.5	21	67	10	60	31	1	16	51	1.53
34959744--34959815	20	3.2	20	66	23	54	33	4	8	54	1.50
34960031--34960069	19	2.0	19	90	5	60	33	7	7	51	1.59
34960996--34961080	43	2.0	43	81	4	100	31	9	10	48	1.70
34962002--34962052	25	2.0	26	84	3	68	62	7	0	29	1.23
34964344--34964391	24	2.0	24	87	0	69	16	14	20	47	1.82
34970535--34970568	17	2.1	17	88	5	52	55	5	5	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34973244--34973296	5	10.8	5	81	4	54	43	5	0	50	1.25
34979012--34979061	24	2.1	24	85	7	66	18	14	22	46	1.84
34979794--34979852	27	2.2	27	87	0	82	16	40	16	25	1.90
34981960--34982076	30	3.9	29	78	16	105	35	27	0	36	1.63
34981896--34982076	29	6.1	28	77	12	123	34	26	2	36	1.71
34982053--34982263	59	3.6	57	73	15	182	28	20	9	40	1.84
34982049--34982221	58	2.9	59	74	13	185	28	20	9	40	1.85
34982049--34982263	117	1.8	116	86	3	306	29	20	9	40	1.85
34982508--34982797	97	3.0	96	90	4	424	30	19	12	37	1.89
34985095--34985206	54	2.1	53	90	8	174	31	1	15	51	1.53
34985388--34985429	22	1.9	22	85	9	59	23	4	2	69	1.20
34991100--34991269	67	2.6	66	91	6	274	52	4	0	42	1.20
34991800--34993155	40	34.6	39	73	12	815	26	16	24	32	1.96
34991800--34993144	79	17.2	79	81	7	1192	26	16	24	32	1.96
34991839--34993248	277	5.2	275	78	10	1281	26	16	24	32	1.96
34992945--34993003	30	2.0	29	93	3	100	32	6	27	33	1.83
34992865--34993068	108	1.9	110	84	8	283	27	14	25	31	1.95
34992975--34993144	78	2.2	79	88	1	243	27	15	26	30	1.96
34993137--34993175	20	2.0	20	90	10	62	33	12	23	30	1.92
34993157--34993245	40	2.2	39	88	7	126	30	13	21	34	1.92
34993547--34993704	49	3.2	49	79	0	145	20	28	13	37	1.91
34994584--34994649	17	3.7	17	76	20	64	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34994596--34994640	14	3.1	14	83	3	63	0	22	0	77	0.76
34994585--34994640	29	2.0	29	89	10	89	0	21	0	78	0.75
34994585--34994633	22	2.2	22	82	7	64	0	20	0	79	0.73
34994581--34994651	8	9.1	8	74	22	55	0	22	0	77	0.77
34994621--34994660	17	2.3	18	86	4	55	5	15	0	80	0.88
34999329--34999371	13	3.2	13	83	3	50	67	0	4	27	1.10
35003889--35004016	57	2.2	58	87	5	188	53	0	0	46	1.05
35006438--35006470	17	1.9	17	88	11	50	24	0	9	66	1.20
35006665--35006818	48	3.1	51	73	13	140	36	16	11	36	1.84
35011785--35011823	21	1.9	20	89	5	60	48	35	0	15	1.45
35012856--35012905	24	2.1	23	88	3	73	64	0	4	32	1.12
35013272--35013305	5	6.8	5	86	0	50	55	0	5	38	1.24
35013272--35013317	15	3.1	15	81	9	51	52	2	6	39	1.40
35013465--35013517	26	2.1	25	85	3	70	35	1	7	54	1.40
35013479--35013671	95	2.0	96	85	3	262	37	5	12	44	1.65
35014016--35014079	24	2.7	22	73	7	56	26	10	18	43	1.83
35015693--35015773	30	2.7	30	81	11	94	55	7	0	37	1.28
35026915--35026943	11	2.7	11	94	5	51	75	6	0	17	1.01
35036126--35036173	25	1.9	25	91	0	78	20	10	31	37	1.87
35038474--35038500	13	2.1	13	100	0	54	62	0	22	14	1.31
35040023--35040061	6	6.5	6	87	0	51	46	0	30	23	1.53
35040020--35040073	12	3.5	16	72	25	53	48	0	25	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35040035--35040073	18	2.3	18	86	8	55	46	0	25	28	1.53
35045266--35045355	6	15.8	6	73	11	82	43	1	2	53	1.20
35045266--35045342	17	4.6	17	83	8	95	40	1	2	55	1.22
35045266--35045354	17	5.7	15	74	18	67	42	1	2	53	1.20
35045264--35045356	32	2.9	33	78	15	97	43	1	2	53	1.19
35045526--35045565	16	2.4	18	80	16	50	17	47	12	22	1.81
35046022--35046097	29	2.5	30	80	6	73	51	6	6	35	1.54
35046073--35046108	9	4.1	9	85	7	56	55	0	0	44	0.99
35047137--35047380	30	8.2	30	75	5	199	35	20	3	40	1.70
35047160--35047379	119	1.9	118	87	2	325	36	20	3	40	1.68
35047137--35047380	60	4.1	60	80	5	289	35	20	3	40	1.70
35047427--35047528	29	3.5	28	72	12	89	37	26	0	35	1.63
35047387--35047593	58	3.5	57	80	9	220	33	28	2	35	1.72
35049865--35050035	23	7.3	23	85	7	220	11	23	22	41	1.87
35049865--35050033	71	2.4	68	85	9	218	11	24	22	41	1.87
35049865--35050107	23	10.5	23	81	9	208	12	24	20	42	1.87
35049865--35050107	94	2.6	94	82	5	262	12	24	20	42	1.87
35050054--35050107	22	2.5	22	100	0	108	11	24	16	48	1.79
35057860--35057903	21	2.0	21	86	4	61	43	2	2	52	1.26
35060397--35060441	17	2.6	17	82	10	56	40	6	0	53	1.27
35066806--35066830	7	3.6	7	100	0	50	56	0	0	44	0.99
35075538--35075768	102	2.3	102	89	0	363	34	16	28	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35079246--35079292	21	2.2	21	84	0	58	29	17	31	21	1.96
35081189--35081279	29	3.1	29	66	9	76	45	17	4	32	1.69
35081151--35081300	59	2.6	59	90	4	225	44	12	5	38	1.65
35082038--35082062	12	2.1	12	100	0	50	52	0	0	48	1.00
35082240--35082270	9	3.4	9	90	0	53	0	48	0	51	1.00
35103654--35103692	16	2.3	18	86	8	55	41	0	2	56	1.13
35105028--35105321	146	2.0	145	99	0	579	26	24	9	39	1.86
35107314--35107348	17	2.1	17	100	0	70	60	0	17	22	1.37
35113440--35113464	3	8.3	3	100	0	50	32	0	36	32	1.58
35119273--35119318	22	2.0	23	83	4	58	36	2	4	56	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143