genome.fa.s11.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  50  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15971828--15971889	26	2.4	26	94	0	106	32	16	19	32	1.94
15973421--15973460	12	3.3	12	92	0	71	0	37	0	62	0.95
15973412--15973460	24	2.0	24	88	0	71	2	34	2	61	1.19
15973419--15973473	24	2.3	24	80	0	65	3	38	0	58	1.16
15983683--15983742	26	2.3	26	91	5	95	36	15	15	33	1.88
15983855--15984083	113	2.0	113	100	0	458	39	20	14	25	1.90
15994349--15994419	19	3.7	18	81	11	79	40	1	4	53	1.29
15998583--15998622	16	2.4	16	87	4	53	0	22	0	77	0.77
15999275--15999307	12	2.6	13	85	4	50	69	12	3	15	1.30
16011503--16011602	39	2.6	38	87	1	137	48	6	5	41	1.50
16013386--16013419	14	2.4	14	100	0	68	17	29	5	47	1.71
16017081--16017364	43	6.6	43	86	2	365	28	23	11	35	1.91
16020607--16020880	136	2.0	136	99	0	539	29	31	13	25	1.93
16021295--16021538	86	2.8	86	83	5	287	39	16	12	31	1.86
16021652--16021699	20	2.4	21	82	10	64	60	0	0	39	0.97
16037069--16037131	17	3.6	17	82	2	72	42	12	25	19	1.86
16039260--16039314	22	2.5	22	87	0	83	32	21	25	20	1.97
16051374--16051662	52	5.6	52	78	7	304	25	15	24	33	1.95
16051374--16051624	103	2.4	104	86	3	346	25	15	24	34	1.95
16057059--16057092	17	2.0	17	88	0	50	11	8	8	70	1.34
16094578--16094631	24	2.3	23	76	20	58	12	9	9	68	1.39
16096852--16096899	17	2.8	17	77	0	51	22	16	8	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16110204--16110261	24	2.4	24	100	0	116	3	39	5	51	1.41
16111298--16111327	15	2.0	15	100	0	60	40	0	26	33	1.57
16117778--16117808	15	2.0	16	93	6	55	45	3	12	38	1.59
16118502--16118532	11	2.8	11	95	0	53	45	0	9	45	1.36
16128406--16128460	3	18.3	3	78	14	60	67	0	32	0	0.91
16133582--16133606	5	5.0	5	100	0	50	40	0	0	60	0.97
16137455--16137479	12	2.1	12	100	0	50	32	16	24	28	1.96
16152404--16152665	129	2.0	129	98	0	506	34	20	22	22	1.97
16153739--16153780	17	2.5	17	88	3	68	83	2	14	0	0.75
16153741--16153780	18	2.3	17	91	4	62	85	2	12	0	0.71
16153739--16153783	16	2.8	16	84	15	65	80	2	17	0	0.82
16154112--16154142	15	2.1	15	93	0	53	58	0	9	32	1.31
16154352--16154388	16	2.1	18	85	14	51	51	0	0	48	1.00
16156087--16156151	26	2.5	26	75	5	69	24	18	24	32	1.97
16156124--16156204	38	2.1	38	88	4	119	22	20	23	33	1.97
16157461--16157502	22	1.9	22	95	0	75	23	16	4	54	1.61
16167936--16168042	40	2.7	40	82	0	124	40	15	19	24	1.91
16168027--16168166	41	3.4	42	77	10	135	34	17	26	22	1.95
16168454--16168538	31	2.8	29	74	11	82	41	12	11	34	1.80
16169852--16170004	41	3.8	41	78	5	132	37	16	25	20	1.93
16169891--16170050	80	2.0	81	81	6	191	36	17	24	21	1.95
16171018--16171047	13	2.3	13	94	0	51	23	20	10	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16173263--16173327	26	2.5	26	89	0	94	50	7	1	40	1.40
16180878--16180933	15	3.4	15	73	21	58	66	0	7	26	1.18
16180886--16180974	18	4.9	18	73	12	83	61	1	7	29	1.31
16180877--16180952	35	2.2	35	95	2	136	64	0	7	27	1.21
16180877--16180932	17	3.2	17	76	14	69	64	0	7	28	1.20
16182816--16182881	26	2.5	26	85	2	78	50	7	18	24	1.72
16200450--16200482	13	2.6	13	85	4	50	0	24	0	75	0.80
16201077--16201111	19	1.9	17	88	11	52	60	11	14	14	1.60
16205452--16205502	24	2.1	25	88	3	77	43	35	0	21	1.53
16205486--16205527	23	1.9	22	85	9	59	30	23	2	42	1.67
16206640--16206671	15	2.1	16	94	5	57	31	6	0	62	1.20
16212540--16212587	25	1.9	26	87	8	73	43	35	2	18	1.62
16212579--16212620	23	1.9	22	85	9	59	30	23	2	42	1.67
16212701--16212752	11	4.7	11	85	0	68	23	30	23	23	1.99
16212744--16212802	27	2.1	28	90	3	93	18	22	22	37	1.94
16212744--16212802	14	4.3	14	78	4	66	18	22	22	37	1.94
16212767--16212821	21	2.7	20	86	5	74	18	23	21	36	1.95
16212769--16212821	7	7.7	7	76	4	54	18	22	22	35	1.95
16213876--16213907	15	2.1	16	94	5	57	31	6	0	62	1.20
16213959--16214014	23	2.5	23	80	8	62	23	1	12	62	1.39
16220208--16220239	15	2.1	15	94	0	55	28	15	15	40	1.88
16224907--16225031	65	1.9	64	82	7	155	40	13	18	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16238834--16238963	66	2.0	66	87	0	188	43	26	11	19	1.85
16239348--16239377	15	2.0	15	93	0	51	43	26	0	30	1.55
16242120--16242182	31	2.1	30	85	8	83	58	0	3	38	1.14
16242144--16242204	24	2.5	25	78	10	72	55	0	4	39	1.21
16242165--16242217	27	1.9	28	84	3	72	52	1	3	41	1.30
16250454--16250493	18	2.3	18	86	4	55	20	17	10	52	1.72
16257721--16257753	16	2.1	16	100	0	66	24	0	18	57	1.40
16284965--16285279	163	1.9	163	95	0	567	37	20	17	25	1.93
16288531--16288623	30	3.1	30	77	0	114	35	2	21	40	1.65
16290294--16290472	43	4.2	42	79	7	182	27	25	8	38	1.85
16290294--16290472	85	2.1	85	82	4	209	27	25	8	38	1.85
16294848--16294898	23	2.2	23	85	0	66	25	7	31	35	1.85
16296523--16296561	8	4.9	8	81	12	53	87	0	7	5	0.68
16296523--16296563	17	2.5	16	92	4	64	85	0	7	7	0.75
16306019--16306067	18	2.7	18	83	0	62	44	24	14	16	1.84
16307992--16309008	507	2.0	508	99	0	2000	30	17	19	31	1.96
16313056--16313096	17	2.4	17	91	0	64	26	12	9	51	1.70
16315468--16315572	30	3.5	30	72	10	97	38	4	19	38	1.73
16321892--16321988	30	3.2	30	70	8	81	32	5	22	39	1.76
16321883--16322006	60	2.1	60	80	8	137	34	5	19	40	1.75
16322630--16322695	18	3.7	18	77	2	53	19	39	18	22	1.92
16345469--16345507	17	2.3	17	86	0	51	48	12	17	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16345952--16345997	24	2.0	23	83	12	58	4	32	0	63	1.14
16349607--16349653	19	2.5	19	93	6	78	55	4	21	19	1.60
16354105--16354144	19	1.9	19	85	14	53	42	0	2	55	1.13
16354350--16354386	18	2.1	18	90	10	58	24	43	0	32	1.55
16354373--16354407	16	2.1	18	89	10	56	34	40	0	25	1.56
16371773--16371847	37	2.1	36	87	7	107	18	20	30	30	1.96
16376443--16376526	37	2.3	38	85	8	129	21	17	29	30	1.96
16381628--16381700	25	2.9	25	85	4	85	36	28	12	21	1.90
16383969--16384006	17	2.2	17	86	9	51	47	10	23	18	1.79
16397757--16397793	19	1.9	19	89	10	58	40	0	2	56	1.13
16397858--16397907	24	2.0	25	81	11	59	30	10	8	52	1.64
16398557--16398581	10	2.5	10	100	0	50	60	0	32	8	1.26
16399669--16399776	55	2.0	55	96	0	198	34	9	5	50	1.57
16403646--16403709	18	3.7	17	71	24	62	54	0	1	43	1.09
16403646--16403711	8	7.8	8	73	18	53	54	0	1	43	1.09
16410136--16410178	21	2.0	22	90	4	70	48	0	0	51	1.00
16410200--16410250	25	2.0	25	92	0	84	11	23	15	49	1.78
16410881--16410992	52	2.2	52	88	1	172	59	11	22	6	1.54
16410984--16411042	6	9.3	6	82	10	73	38	0	61	0	0.96
16411073--16411145	11	6.9	11	71	6	53	49	1	1	47	1.18
16422635--16422683	21	2.3	22	79	10	57	46	2	14	36	1.56
16433950--16434003	16	3.4	16	80	12	58	12	9	3	74	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16433950--16434007	15	3.7	15	80	13	57	13	8	3	74	1.19
16436742--16436782	18	2.3	19	80	20	52	17	4	0	78	0.93
16438266--16438299	17	1.9	17	94	5	59	20	0	0	79	0.73
16444637--16444675	13	2.8	13	88	7	51	38	2	10	48	1.51
16446394--16446424	15	2.1	15	93	0	53	38	3	6	51	1.44
16449641--16449805	24	6.7	24	71	6	116	18	29	16	35	1.93
16449630--16449781	50	3.0	50	90	0	232	19	26	17	37	1.93
16457291--16457500	112	1.9	112	93	4	361	30	20	11	37	1.88
16457949--16458362	49	8.4	48	71	9	192	35	16	30	17	1.92
16457931--16458309	49	7.7	49	73	8	293	36	15	30	17	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143