genome.fa.s11.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  118  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35678717--35679147	29	14.8	30	76	8	293	36	3	23	36	1.72
35678764--35679148	58	6.6	58	78	8	363	36	3	23	36	1.73
35678764--35679138	87	4.3	88	82	5	395	36	3	23	36	1.72
35681101--35681166	6	11.3	6	72	18	50	50	3	1	45	1.26
35681106--35681178	17	4.2	17	82	3	92	53	4	1	41	1.28
35681106--35681178	35	2.1	35	85	7	96	53	4	1	41	1.28
35681114--35681198	17	4.9	17	72	8	64	52	5	3	37	1.43
35681106--35681199	35	2.7	35	81	3	91	53	5	3	38	1.40
35682735--35682783	25	2.0	24	84	8	62	46	2	2	48	1.25
35683760--35683828	19	3.5	19	67	16	50	53	2	4	39	1.36
35684907--35685215	29	10.6	30	73	10	207	33	27	2	36	1.72
35684907--35685193	57	4.9	58	83	8	322	33	27	3	36	1.73
35684907--35685184	115	2.4	117	86	7	381	33	26	2	36	1.72
35684965--35685220	58	4.4	59	82	8	228	33	27	2	36	1.70
35688495--35688534	21	1.9	21	85	10	55	27	2	12	57	1.48
35689060--35689106	20	2.3	21	82	10	62	34	29	6	29	1.82
35689118--35689176	7	8.6	7	74	10	50	40	32	1	25	1.66
35690179--35690274	30	3.2	30	65	18	74	34	3	31	31	1.73
35690180--35690295	58	2.0	59	89	1	180	31	2	33	31	1.72
35691994--35692104	6	19.3	6	71	12	72	47	4	2	45	1.37
35692352--35692897	92	5.9	92	94	0	934	29	18	17	34	1.94
35692822--35693202	76	5.1	75	81	10	451	32	21	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35692822--35693201	152	2.5	148	88	5	534	32	21	13	32	1.92
35704878--35705008	58	2.2	58	93	1	217	35	0	31	32	1.64
35704878--35704973	29	3.2	30	70	12	90	37	1	30	31	1.65
35704900--35704998	29	3.4	29	71	10	94	34	1	34	30	1.65
35704900--35705001	28	3.5	28	71	11	89	33	0	35	30	1.65
35704900--35705030	29	4.5	28	71	10	84	33	0	32	33	1.64
35704983--35705166	30	6.2	29	83	6	201	34	2	23	39	1.69
35704983--35705166	89	2.1	89	86	6	257	34	2	23	39	1.69
35705036--35705170	59	2.3	59	91	3	211	34	3	23	37	1.73
35707081--35707191	6	19.3	6	71	12	63	47	4	2	45	1.37
35707081--35707198	17	6.9	17	72	5	94	48	4	2	44	1.35
35707725--35707813	6	15.0	6	74	18	80	43	3	0	52	1.17
35707725--35707813	17	5.4	16	83	14	110	43	3	0	52	1.17
35707742--35707792	11	4.8	11	76	9	52	39	5	0	54	1.24
35707725--35707798	31	2.3	32	93	4	123	40	4	0	55	1.19
35707730--35707804	37	2.0	37	87	5	107	41	4	0	54	1.19
35708538--35708582	3	15.0	3	95	0	81	64	0	2	33	1.06
35708804--35708846	22	1.9	23	90	4	70	76	6	9	6	1.15
35708837--35708880	22	2.1	20	87	8	61	65	0	27	6	1.17
35709569--35709766	30	6.6	30	95	0	344	34	24	5	35	1.79
35709717--35710089	59	6.4	57	79	10	292	31	27	5	35	1.79
35709569--35710054	30	16.5	28	71	15	97	31	26	5	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35709757--35710091	118	2.8	117	83	2	447	29	28	5	35	1.81
35709757--35710091	177	1.9	176	88	1	501	29	28	5	35	1.81
35709746--35710084	29	11.5	30	63	23	107	30	27	5	35	1.79
35709983--35710084	30	3.4	29	73	17	102	33	26	2	37	1.72
35709757--35710127	59	6.3	59	83	5	306	28	28	6	36	1.82
35722038--35722840	175	4.6	175	79	11	907	34	18	20	27	1.95
35722320--35723009	69	10.0	69	93	0	1053	34	17	20	27	1.95
35722320--35723009	206	3.3	206	90	1	1078	34	17	20	27	1.95
35722320--35723009	275	2.5	275	92	0	1112	34	17	20	27	1.95
35723366--35723477	6	19.0	6	76	16	110	44	4	0	50	1.22
35723366--35723472	17	6.5	16	80	12	103	42	4	0	52	1.22
35723383--35723456	11	6.8	11	73	14	64	41	6	0	51	1.28
35724218--35724247	3	10.0	3	92	0	51	63	0	3	33	1.11
35724466--35724508	22	1.9	23	90	4	70	76	6	9	6	1.15
35724499--35724542	22	2.1	20	87	8	61	65	0	27	6	1.17
35725226--35725336	30	3.7	30	93	2	179	35	23	5	36	1.78
35725288--35725601	59	5.4	57	80	9	269	31	27	5	36	1.79
35725348--35725566	29	7.5	28	67	16	113	30	26	5	37	1.79
35725376--35725530	30	5.2	30	66	12	104	30	28	6	34	1.82
35725319--35725603	118	2.4	117	84	3	376	30	27	5	36	1.80
35725495--35725596	29	3.5	30	70	17	97	33	24	2	39	1.70
35725319--35725639	118	2.7	117	82	5	328	29	28	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35728997--35729119	54	2.3	55	80	2	142	32	8	12	47	1.70
35732390--35732445	16	3.5	16	85	0	58	48	5	19	26	1.70
35735656--35735706	21	2.4	21	80	6	59	21	3	7	66	1.34
35735832--35735870	21	1.9	20	84	5	51	28	7	12	51	1.67
35737993--35738082	41	2.2	38	79	11	90	36	2	4	56	1.32
35743162--35743208	19	2.6	18	83	6	58	48	0	2	48	1.13
35750926--35750979	11	5.1	11	76	17	51	38	3	0	57	1.17
35750944--35750971	14	2.0	14	100	0	56	35	7	0	57	1.26
35752800--35752893	30	3.2	30	69	24	99	32	28	2	36	1.69
35752760--35753130	59	6.3	59	91	3	567	35	30	1	33	1.65
35752760--35753130	117	3.2	117	89	6	558	35	30	1	33	1.65
35756120--35756166	11	3.8	13	78	18	55	19	46	21	12	1.82
35759113--35759202	41	2.2	40	78	2	99	31	22	30	16	1.96
35759147--35759260	58	1.9	59	89	1	176	29	24	32	13	1.93
35759207--35759425	41	5.4	41	83	2	253	31	22	30	16	1.96
35763954--35764305	43	8.3	43	84	1	415	25	16	28	29	1.97
35763954--35764305	85	4.1	86	82	2	408	25	16	28	29	1.97
35764808--35764871	16	3.8	16	81	6	65	46	1	3	48	1.27
35764806--35764921	6	20.3	6	72	13	84	43	1	4	50	1.32
35764806--35764921	11	10.2	12	75	13	84	43	1	4	50	1.32
35764799--35764921	17	6.9	17	74	12	95	43	1	4	50	1.30
35765634--35765669	18	1.9	18	88	5	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35766889--35766966	28	2.8	26	77	14	75	38	26	1	33	1.65
35766942--35767030	44	2.0	43	84	2	115	35	26	2	34	1.69
35767019--35767287	29	9.2	28	70	22	162	34	28	2	34	1.70
35766985--35767359	59	6.4	59	84	5	440	31	29	3	35	1.75
35766985--35767383	117	3.4	117	84	6	488	32	28	3	36	1.74
35767369--35767430	28	2.2	29	78	18	69	32	29	11	27	1.91
35779549--35780445	76	11.8	76	93	0	1395	32	16	18	32	1.93
35781352--35781415	16	3.8	16	81	6	65	46	1	3	48	1.27
35781350--35781465	6	20.3	6	72	13	84	43	1	4	50	1.32
35781350--35781465	11	10.2	12	75	13	84	43	1	4	50	1.32
35781343--35781465	17	6.9	17	74	12	95	43	1	4	50	1.30
35783428--35783493	30	2.2	29	81	2	78	37	16	9	36	1.81
35783486--35784002	59	8.8	59	82	3	578	31	28	4	35	1.77
35783485--35784002	118	4.4	118	85	2	668	31	27	4	35	1.78
35783485--35784002	177	2.9	176	85	4	695	31	27	4	35	1.78
35786768--35786838	29	2.5	29	82	13	85	40	1	22	35	1.63
35786767--35786925	29	5.5	29	69	18	80	38	3	23	34	1.71
35786872--35786934	29	2.2	29	83	8	76	33	4	22	39	1.75
35786792--35786925	58	2.3	57	81	8	146	35	2	26	35	1.72
35786767--35786926	87	1.8	88	81	11	204	38	3	23	35	1.71
35786889--35786954	29	2.2	30	83	2	89	33	4	18	43	1.70
35787962--35788012	25	2.1	23	85	7	66	41	3	0	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35787968--35788022	25	2.2	24	81	9	65	45	3	0	50	1.19
35788886--35788949	27	2.3	28	83	2	76	50	4	1	43	1.32
35788897--35788936	17	2.4	16	84	15	55	52	5	0	42	1.23
35788903--35788955	28	1.9	27	84	3	70	52	9	0	37	1.34
35794084--35794342	58	4.4	58	92	0	401	31	3	31	33	1.75
35794084--35794342	117	2.2	117	90	2	405	31	3	31	33	1.75
35794084--35794343	30	8.9	30	71	17	181	31	3	31	33	1.75
35795035--35795077	16	2.5	18	79	20	56	4	20	0	74	1.00
35795035--35795076	17	2.5	17	82	17	52	4	21	0	73	1.01
35796198--35796256	6	9.8	6	73	14	50	55	1	3	38	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143