genome.fa.s11.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  48  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15261204--15261238	7	5.0	7	85	0	52	68	11	2	17	1.31
15271243--15271278	17	2.2	17	90	9	58	25	5	13	55	1.60
15273581--15273627	23	2.0	23	100	0	94	27	8	29	34	1.87
15283737--15283786	20	2.5	19	90	6	73	26	8	38	28	1.84
15285706--15285796	23	4.0	23	86	0	137	50	10	4	34	1.58
15288827--15288937	23	4.8	23	85	0	123	48	12	4	34	1.61
15289398--15289552	72	2.2	70	85	4	206	35	22	9	32	1.86
15289398--15289552	36	4.4	36	82	3	183	35	22	9	32	1.86
15294239--15294325	44	2.0	43	93	2	147	20	10	12	56	1.65
15301471--15301510	21	1.9	21	89	0	62	72	10	10	7	1.28
15303048--15303093	18	2.6	18	82	0	56	54	8	6	30	1.56
15313811--15313851	17	2.4	17	80	19	50	19	17	12	51	1.76
15314432--15314474	20	2.2	20	80	8	54	79	0	18	2	0.85
15314432--15314473	6	7.0	6	78	10	50	78	0	19	2	0.86
15318313--15318339	7	3.9	7	100	0	54	14	0	40	44	1.46
15327168--15327317	27	5.6	27	87	1	221	24	15	22	37	1.93
15327319--15327401	24	3.5	24	77	6	87	27	21	20	30	1.98
15345574--15345603	12	2.5	12	94	0	51	10	43	10	36	1.72
15347453--15347503	21	2.4	21	80	6	59	33	25	13	27	1.94
15349209--15349250	19	2.2	20	83	12	52	69	7	4	19	1.31
15350552--15350594	22	2.0	22	81	9	52	34	0	13	51	1.42
15357859--15357918	30	2.0	31	86	3	86	28	1	5	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15361545--15361587	22	2.0	22	81	9	52	34	0	13	51	1.42
15370157--15370192	18	2.0	18	88	0	54	72	2	0	25	0.98
15372878--15372915	7	5.6	7	93	3	60	15	7	15	60	1.57
15376647--15376732	37	2.3	37	85	0	118	24	17	29	29	1.97
15379381--15379427	21	2.2	21	78	17	53	38	0	48	12	1.41
15381676--15381720	12	3.8	12	82	11	65	4	13	6	75	1.15
15381671--15381726	24	2.3	24	93	0	94	3	17	7	71	1.23
15393103--15393143	21	2.0	21	85	9	57	34	26	12	26	1.92
15393881--15394066	52	3.6	52	91	0	300	34	24	15	25	1.94
15400263--15400337	21	3.6	21	78	5	73	29	24	13	33	1.93
15401076--15401257	52	3.5	52	96	0	337	34	26	15	23	1.95
15402094--15402132	21	1.9	21	89	5	62	35	20	0	43	1.52
15402320--15402446	61	2.1	61	96	0	236	22	19	11	46	1.81
15420709--15420873	61	2.8	60	82	10	191	29	21	15	33	1.94
15420915--15421041	58	2.2	59	83	9	161	36	15	20	27	1.93
15424054--15424265	56	3.8	56	81	5	214	21	16	25	36	1.94
15424038--15424155	28	4.2	28	72	10	89	23	15	27	33	1.95
15424087--15424265	28	6.4	29	69	16	101	21	16	26	35	1.94
15424250--15424315	27	2.4	27	82	7	71	18	15	28	37	1.91
15435562--15435599	19	2.0	19	90	10	60	7	13	5	73	1.22
15439336--15439520	28	6.6	27	70	9	113	22	18	24	35	1.96
15439302--15439520	56	3.9	56	81	3	253	22	18	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15439454--15439560	28	3.9	26	73	10	81	20	17	24	37	1.94
15442664--15442774	28	3.9	28	78	9	125	28	14	25	31	1.95
15445943--15446034	34	2.7	34	98	0	175	15	13	33	38	1.86
15446033--15447614	215	7.4	214	83	5	1775	27	16	15	40	1.88
15446033--15447614	414	3.7	429	83	5	1926	27	16	15	40	1.88
15446906--15447513	199	3.0	198	81	6	655	27	17	15	40	1.89
15456991--15459513	215	11.7	214	83	4	2653	28	17	14	40	1.88
15456791--15459513	431	6.4	430	81	4	2900	27	16	14	40	1.88
15456791--15459513	646	4.2	644	82	4	2931	27	16	14	40	1.88
15459231--15459803	308	1.9	307	83	4	751	28	17	14	39	1.89
15459510--15460793	216	6.0	216	82	3	1462	28	17	14	40	1.89
15459004--15460044	523	2.0	522	85	3	1389	28	17	14	38	1.90
15459510--15460793	432	3.0	428	86	3	1659	28	17	14	40	1.89
15462457--15462489	18	1.9	17	88	11	50	12	9	6	72	1.26
15462699--15462777	39	2.0	39	97	0	149	36	8	25	29	1.86
15465556--15465702	73	2.0	73	97	2	278	35	13	8	42	1.74
15465556--15465702	36	4.1	36	94	5	269	35	13	8	42	1.74
15466422--15466519	50	1.9	52	85	4	137	37	11	17	33	1.85
15466404--15466559	50	3.1	50	76	8	136	36	12	16	34	1.86
15466752--15466784	17	1.9	17	88	11	50	66	6	0	27	1.15
15467703--15467801	39	2.5	39	88	0	144	24	6	16	53	1.65
15470108--15470140	10	3.3	10	95	0	57	18	39	9	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15473843--15473942	49	2.0	49	98	0	191	29	13	16	42	1.85
15480485--15480526	15	2.8	15	75	13	50	21	28	16	33	1.95
15480528--15481146	216	2.9	216	85	1	821	26	17	14	40	1.89
15481038--15481237	111	1.8	111	85	4	287	28	22	12	37	1.90
15482082--15505751	215	109.8	215	83	2	27811	27	17	14	40	1.88
15481151--15505833	432	57.3	429	90	2	29439	27	17	14	40	1.88
15505784--15505889	56	1.9	56	92	0	176	31	13	16	39	1.86
15506179--15506484	154	2.0	157	85	3	420	29	16	13	40	1.86
15510892--15510925	18	1.9	17	88	5	50	5	26	2	64	1.30
15511928--15511996	27	2.6	28	77	13	74	15	14	0	69	1.19
15511926--15511994	28	2.4	27	78	7	75	17	14	0	68	1.22
15513768--15513811	17	2.6	17	74	0	52	13	15	4	65	1.41
15513802--15513871	27	2.6	27	82	8	81	15	14	1	68	1.28
15513801--15513872	28	2.6	28	78	8	76	15	13	1	69	1.26
15515649--15515692	17	2.6	17	74	0	52	13	15	4	65	1.41
15515683--15515752	27	2.6	27	82	8	81	15	14	1	68	1.28
15515682--15515753	28	2.6	28	78	8	76	15	13	1	69	1.26
15517527--15517570	17	2.6	17	74	0	52	13	15	4	65	1.41
15517561--15517630	27	2.6	27	82	8	81	15	14	1	68	1.28
15517560--15517630	28	2.6	28	77	8	74	15	14	1	69	1.27
15518836--15518966	50	2.6	50	82	6	147	36	11	15	36	1.83
15519168--15519200	17	1.9	17	88	11	50	66	6	0	27	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15519796--15520132	180	1.9	179	85	1	469	28	18	13	39	1.89
15519982--15520517	216	2.5	214	78	7	546	30	16	12	39	1.86
15520537--15521559	216	4.8	215	82	4	1199	29	17	14	39	1.88
15521582--15525717	215	19.3	213	79	5	4023	28	18	14	38	1.90
15521619--15525716	643	6.4	643	81	4	4476	28	18	14	38	1.90
15521582--15525717	429	9.6	428	80	5	4239	28	18	14	38	1.90
15525728--15528254	215	11.8	214	78	4	2431	28	18	14	38	1.90
15525727--15528215	428	5.8	427	80	6	2740	28	18	14	38	1.90
15525728--15528254	216	11.8	215	78	4	2378	28	18	14	38	1.90
15528265--15529500	215	5.8	214	78	5	1237	28	18	14	38	1.90
15528316--15529466	428	2.7	427	80	6	1326	28	18	14	38	1.90
15529682--15531963	427	5.3	428	80	6	2530	28	18	14	38	1.90
15529709--15531960	641	3.5	640	82	4	2924	28	18	14	38	1.90
15531973--15535958	215	18.8	215	81	6	4262	28	18	14	38	1.90
15531973--15535958	425	9.4	426	81	7	4350	28	18	14	38	1.90
15531973--15535958	213	18.8	214	80	6	4273	28	18	14	38	1.90
15535968--15553594	213	82.7	213	81	5	19230	27	18	14	38	1.91
15535968--15553595	214	82.7	215	81	5	19270	27	18	14	38	1.91
15553264--15553987	393	1.8	395	85	4	1025	27	19	14	38	1.91
15553605--15556074	215	11.5	215	81	5	2838	27	19	14	38	1.91
15553606--15556066	639	3.8	643	84	3	3275	27	19	14	38	1.91
15556136--15556799	215	3.1	213	83	4	831	28	18	15	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15557589--15557645	24	2.3	25	82	11	73	33	5	5	56	1.44
15558318--15558388	17	4.0	18	78	9	67	43	2	1	52	1.24
15558327--15558401	17	4.6	17	77	9	84	49	2	1	46	1.24
15558327--15558401	6	12.7	6	72	13	66	49	2	1	46	1.24
15558735--15559177	68	6.5	68	94	1	755	28	20	17	34	1.95
15571056--15571322	30	9.1	29	66	19	126	34	5	28	30	1.80
15571049--15571422	59	6.4	58	87	3	484	34	6	29	29	1.82
15571049--15571420	117	3.2	117	89	4	538	34	6	29	29	1.82
15571145--15571361	29	7.5	28	71	11	96	34	6	29	29	1.82
15571284--15571382	29	3.3	30	65	16	71	37	6	32	24	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143