genome.fa.s11.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  139  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41259009--41259099	41	2.2	41	78	0	101	50	9	9	29	1.68
41266346--41266433	41	2.1	41	95	0	158	46	13	15	23	1.82
41272860--41272917	29	2.0	28	93	3	98	39	5	32	22	1.76
41274083--41274150	31	2.2	31	84	7	93	54	13	13	19	1.71
41276717--41276781	31	2.1	31	88	0	94	46	10	9	33	1.71
41284181--41284243	31	2.0	31	84	6	83	46	14	6	33	1.70
41291556--41291624	36	1.9	35	85	2	93	57	2	2	36	1.28
41298951--41299005	20	2.6	21	80	5	58	34	1	1	61	1.17
41298976--41299044	20	3.3	20	75	15	59	37	2	1	57	1.22
41301670--41301718	25	1.9	26	84	12	66	38	4	2	55	1.31
41302364--41302409	22	2.2	21	82	17	60	43	0	0	56	0.99
41302367--41302419	25	2.3	21	81	15	61	45	0	0	54	0.99
41309029--41309061	14	2.4	14	90	5	50	72	0	12	15	1.12
41309518--41309577	23	2.5	24	78	2	68	66	20	5	8	1.37
41309524--41309592	35	2.0	35	85	5	95	68	17	5	8	1.36
41309518--41309610	12	7.8	12	76	11	75	68	19	4	7	1.31
41309589--41309637	21	2.4	21	89	3	73	69	20	2	8	1.24
41309583--41309654	33	2.2	33	80	5	83	69	18	2	9	1.28
41309627--41309693	19	3.4	19	81	6	80	68	14	2	13	1.32
41309639--41309693	21	2.8	20	88	5	85	69	14	3	12	1.33
41310434--41310459	2	13.0	2	100	0	52	50	0	0	50	1.00
41311517--41311565	2	24.5	2	100	0	98	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41324779--41324855	13	5.5	13	72	23	50	68	2	1	27	1.10
41324902--41324941	11	3.5	11	86	6	53	65	0	7	27	1.20
41328304--41328430	65	2.0	65	95	0	227	29	17	12	40	1.86
41329169--41329208	15	2.7	15	84	0	53	55	0	17	27	1.43
41331950--41331991	21	2.0	22	86	13	61	21	9	7	61	1.50
41333193--41333232	20	2.0	20	95	0	71	50	5	7	37	1.53
41333199--41333243	20	2.2	20	84	0	54	51	4	4	40	1.42
41333818--41333851	10	3.8	9	88	11	52	23	32	20	23	1.98
41334339--41334391	15	3.4	15	75	17	54	33	0	0	66	0.92
41337092--41337127	2	18.0	2	88	0	54	0	44	0	55	0.99
41341621--41341673	26	2.0	26	88	0	79	47	20	0	32	1.51
41347962--41348028	13	5.5	12	77	13	57	53	1	0	44	1.09
41350537--41350650	30	3.8	31	76	12	107	24	10	9	55	1.64
41350515--41350701	89	2.1	89	81	9	213	23	13	12	49	1.77
41350938--41350993	26	2.2	25	90	6	94	69	5	3	21	1.24
41371150--41371210	31	2.0	31	83	0	77	50	11	14	22	1.75
41374891--41374933	21	2.3	18	75	24	52	53	2	0	44	1.13
41376144--41376171	13	2.2	13	100	0	56	28	21	21	28	1.99
41397245--41397279	15	2.3	15	86	13	54	80	5	0	14	0.89
41401030--41401066	2	19.0	2	94	5	67	48	0	0	51	1.00
41405603--41405700	46	2.1	47	88	9	148	30	19	3	46	1.65
41415967--41416004	20	1.9	20	89	10	60	21	18	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41416406--41416436	3	10.3	3	92	0	53	32	29	35	3	1.73
41427897--41428157	129	2.0	127	95	1	468	41	18	13	26	1.87
41429843--41429869	8	3.4	8	100	0	54	37	37	0	25	1.57
41433582--41433634	21	2.5	21	81	6	63	71	9	5	13	1.29
41434844--41434892	23	2.1	23	85	14	66	73	6	6	14	1.22
41444551--41444591	18	2.3	18	87	4	57	63	9	7	19	1.48
41449851--41449899	21	2.2	23	85	7	66	61	2	0	36	1.08
41449851--41449899	23	2.2	21	82	13	55	61	2	0	36	1.08
41458021--41458051	16	1.9	16	93	0	53	22	0	6	70	1.09
41463354--41463442	46	1.9	46	100	0	178	14	31	23	30	1.94
41474644--41474690	18	2.7	18	84	12	62	38	2	0	59	1.09
41474644--41474691	19	2.7	18	81	9	53	39	2	0	58	1.10
41474666--41474703	17	2.2	18	85	4	51	44	0	0	55	0.99
41475257--41475608	116	2.9	120	89	7	518	26	11	26	34	1.91
41494041--41494071	4	7.8	4	100	0	62	25	0	22	51	1.48
41494986--41495072	44	2.0	44	88	0	129	34	12	12	40	1.81
41496736--41496773	19	2.1	19	85	5	51	31	2	2	63	1.22
41505452--41505482	4	7.8	4	100	0	62	25	0	22	51	1.48
41506397--41506483	44	2.0	44	88	0	129	34	12	12	40	1.81
41508147--41508184	19	2.1	19	85	5	51	31	2	2	63	1.22
41514939--41514969	4	7.8	4	100	0	62	25	0	22	51	1.48
41522666--41522817	59	2.6	59	88	5	220	34	4	29	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41522667--41522835	29	5.8	29	72	18	113	34	4	29	31	1.76
41522666--41522863	59	3.4	58	83	11	210	35	3	27	32	1.74
41522821--41522923	30	3.4	30	90	2	154	40	1	18	38	1.62
41524752--41524810	6	9.8	6	75	14	59	54	0	5	40	1.23
41524753--41524810	17	3.6	17	79	13	77	55	0	5	39	1.22
41526937--41526982	24	1.9	24	86	8	67	50	4	2	43	1.34
41526944--41527020	29	2.7	29	80	13	88	48	2	3	45	1.34
41533004--41533065	22	2.9	22	81	9	65	54	1	8	35	1.39
41534993--41535022	13	2.2	14	94	5	53	0	30	0	70	0.88
41538462--41538497	12	3.0	12	87	0	54	63	16	11	8	1.49
41538443--41538506	24	2.7	24	77	0	65	65	18	6	9	1.42
41538509--41538619	22	5.2	20	76	12	96	65	19	5	9	1.40
41538912--41538968	28	2.0	28	86	6	80	59	1	0	38	1.08
41538921--41538959	20	1.9	20	89	5	60	61	2	0	35	1.10
41543281--41543324	20	2.3	20	80	7	56	31	0	2	65	1.05
41547859--41547908	26	1.9	26	87	0	73	52	12	4	32	1.57
41548249--41548281	17	1.9	17	93	0	57	84	0	3	12	0.72
41555223--41555263	20	2.0	20	86	9	57	29	2	2	65	1.18
41558673--41558706	18	1.9	18	88	5	52	47	2	0	50	1.16
41564477--41564947	131	3.6	131	89	1	685	30	12	13	43	1.81
41571788--41571857	31	2.3	31	87	2	97	20	11	24	44	1.84
41584635--41584668	15	2.3	15	100	0	68	14	17	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41586617--41586933	159	2.0	159	100	0	634	32	15	20	31	1.93
41602504--41602532	11	2.5	12	88	11	51	86	0	6	6	0.72
41604127--41604188	11	5.8	11	79	5	56	67	3	4	24	1.25
41604167--41604210	23	1.9	23	95	0	79	75	9	4	11	1.19
41605144--41605199	23	2.7	20	76	18	60	51	1	12	33	1.50
41615428--41615921	253	2.0	247	91	2	808	21	26	12	39	1.89
41616667--41616867	109	1.8	110	88	7	311	44	18	13	23	1.85
41619161--41619194	15	2.3	15	89	0	50	29	11	0	58	1.33
41621395--41621461	20	3.2	20	76	21	59	50	5	2	40	1.42
41632614--41632674	29	2.1	29	84	3	77	55	14	4	24	1.59
41632622--41632695	29	2.5	30	86	4	96	50	13	5	31	1.64
41638195--41638234	15	2.5	17	88	12	66	62	0	0	37	0.95
41638181--41638238	23	2.4	26	76	21	63	56	0	0	43	0.99
41640214--41640266	24	2.3	23	77	12	54	45	7	0	47	1.31
41642135--41642199	27	2.4	25	76	18	69	66	1	1	30	1.10
41642209--41642261	15	3.8	15	74	23	53	60	7	0	32	1.25
41643558--41643587	10	3.1	10	95	4	53	33	0	6	60	1.23
41644232--41644287	29	1.9	29	92	0	94	28	7	12	51	1.65
41649496--41649578	41	2.0	41	90	0	130	40	2	16	39	1.62
41650979--41651017	17	2.2	17	86	4	51	33	10	7	48	1.66
41658168--41658525	168	2.2	163	81	8	393	38	17	7	36	1.79
41658546--41658587	19	2.2	20	83	12	52	47	14	21	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41660782--41660841	31	2.0	30	86	3	84	46	5	11	36	1.62
41661872--41661902	14	2.2	14	94	0	53	67	12	0	19	1.22
41661872--41661943	11	6.5	11	75	0	54	65	12	6	15	1.46
41664012--41664340	27	13.2	27	62	19	106	25	4	46	23	1.72
41664066--41664145	21	3.5	21	67	18	61	25	1	52	21	1.54
41664034--41664319	48	5.9	48	82	6	292	25	4	47	22	1.69
41664034--41664311	96	2.9	95	81	4	324	25	4	47	22	1.70
41664082--41664388	75	4.1	75	66	17	201	26	5	45	22	1.73
41664034--41664319	144	2.0	147	84	4	384	25	4	47	22	1.69
41664178--41664439	126	2.1	123	83	3	319	26	5	45	22	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143