genome.fa.s11.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  110  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33496553--33496578	13	2.0	13	100	0	52	38	0	15	46	1.46
33496755--33496822	35	1.9	35	82	11	86	44	22	1	32	1.62
33502684--33502752	29	2.4	28	83	9	86	60	4	2	31	1.31
33502698--33502752	29	2.0	29	89	7	87	61	3	3	30	1.30
33513002--33513039	19	2.0	19	94	0	67	36	7	21	34	1.82
33537303--33537353	18	2.8	18	82	8	59	35	5	13	45	1.68
33540942--33541012	20	3.4	19	78	19	70	70	9	11	8	1.34
33540956--33541010	23	2.4	23	84	6	76	72	12	9	5	1.26
33549762--33549814	23	2.3	23	80	0	61	45	0	9	45	1.36
33549786--33549865	30	2.7	30	81	7	85	45	1	5	48	1.32
33550051--33550087	3	12.3	3	100	0	74	67	0	0	32	0.91
33550980--33551047	20	3.2	21	72	16	59	69	19	1	10	1.25
33551040--33551076	12	3.1	12	92	0	65	75	10	0	13	1.04
33551906--33551951	12	3.8	12	85	0	56	67	17	6	8	1.39
33551882--33552030	44	3.3	43	75	9	122	65	18	7	8	1.44
33552474--33552528	15	3.4	16	75	12	58	63	0	1	34	1.05
33553376--33553568	98	1.9	99	82	5	235	41	8	13	35	1.75
33555210--33555272	31	2.1	31	90	3	101	42	23	9	23	1.83
33555366--33555432	30	2.2	31	84	7	84	47	17	13	20	1.81
33557333--33557380	19	2.6	18	86	3	60	39	0	2	58	1.10
33557341--33557380	18	2.2	19	86	8	57	40	0	0	60	0.97
33557338--33557380	19	2.3	19	88	4	61	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33557371--33557407	19	2.0	19	89	5	58	40	0	2	56	1.13
33557343--33557408	18	3.8	17	74	11	53	42	0	1	56	1.08
33567690--33567731	18	2.3	18	84	12	50	66	0	26	7	1.17
33567717--33567749	14	2.5	13	90	9	50	75	0	24	0	0.80
33572969--33573033	30	2.1	30	86	8	87	23	4	20	52	1.65
33576036--33576089	23	2.3	23	87	0	81	44	7	24	24	1.79
33578378--33578522	29	5.0	28	74	17	91	35	5	26	33	1.80
33578383--33578648	59	4.5	60	81	10	289	34	3	26	35	1.72
33578411--33578645	30	8.0	29	76	16	191	34	2	27	35	1.71
33579718--33579776	3	20.0	3	75	16	52	33	0	3	62	1.12
33579751--33579778	13	2.2	13	100	0	56	39	0	0	60	0.97
33580530--33580626	6	16.2	6	68	16	58	52	3	1	43	1.23
33580530--33580654	17	7.4	17	76	5	110	52	4	1	41	1.29
33589840--33589871	13	2.3	15	89	10	50	21	3	6	68	1.26
33602068--33602170	45	2.2	45	86	3	134	50	11	9	28	1.70
33602308--33602371	27	2.3	28	83	5	76	37	1	7	53	1.40
33604496--33604575	29	2.7	29	74	12	74	37	1	28	32	1.65
33604592--33604780	30	6.5	29	68	22	103	36	3	25	33	1.74
33604527--33604753	59	3.8	58	83	10	282	35	3	28	32	1.74
33604527--33604752	118	1.9	118	87	7	334	35	3	28	32	1.74
33604532--33604780	59	4.2	57	82	12	274	36	4	27	32	1.76
33604704--33604789	29	3.0	28	77	16	86	34	3	25	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33604726--33604880	30	5.2	28	71	14	96	34	4	23	38	1.75
33609288--33609322	18	1.9	18	94	0	61	31	5	20	42	1.75
33609404--33609450	21	2.1	22	84	7	60	23	21	0	55	1.44
33610078--33610115	19	2.0	19	85	10	51	39	5	0	55	1.23
33613503--33613560	24	2.4	24	85	0	71	8	6	15	68	1.36
33614181--33614241	29	2.1	29	84	6	79	54	1	14	29	1.50
33625073--33625108	16	2.2	16	95	0	63	52	0	13	33	1.41
33625274--33625325	26	2.0	26	85	10	72	51	0	1	46	1.12
33625298--33625424	58	2.2	58	91	2	202	51	0	0	46	1.11
33626463--33626599	71	1.9	70	80	12	156	58	3	1	36	1.25
33630797--33630854	30	1.9	31	82	6	75	53	8	12	25	1.66
33631158--33631264	49	2.2	49	91	0	169	32	28	13	25	1.93
33631158--33631281	49	2.5	50	84	7	148	33	29	12	25	1.93
33632317--33632356	18	2.2	18	86	8	55	17	7	10	65	1.46
33648993--33649630	304	2.1	296	82	8	767	42	7	12	37	1.70
33650899--33650948	25	2.0	25	84	0	64	56	12	8	24	1.62
33659908--33659962	27	2.0	27	100	0	110	41	10	25	21	1.86
33662036--33662074	19	2.1	18	85	4	51	33	0	5	61	1.18
33664947--33665010	22	2.9	22	74	6	67	50	0	3	46	1.17
33675970--33676033	28	2.3	28	79	12	78	26	10	9	53	1.66
33675973--33676049	29	2.6	30	84	12	88	24	10	9	55	1.62
33675985--33676049	28	2.2	28	89	8	94	24	9	10	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33676577--33676662	22	3.7	23	78	7	95	37	16	15	31	1.89
33678710--33678749	12	3.1	12	80	19	53	17	12	10	60	1.59
33684031--33684105	24	3.1	24	83	7	98	56	6	12	25	1.60
33687187--33687298	17	6.5	17	79	10	95	38	0	4	56	1.26
33687186--33687298	35	3.3	34	87	5	138	38	0	4	56	1.25
33687221--33687276	11	4.9	11	78	10	51	37	1	1	58	1.19
33687214--33687298	6	14.5	6	72	17	63	41	1	2	55	1.20
33687186--33687298	52	2.2	52	87	3	156	38	0	4	56	1.25
33689016--33689145	35	3.8	34	81	8	147	40	1	3	54	1.28
33689044--33689145	6	17.5	6	72	16	81	42	1	1	53	1.23
33689016--33689145	17	7.5	17	82	6	163	40	1	3	54	1.28
33689068--33689123	11	4.9	11	82	10	60	39	1	1	57	1.20
33689063--33689111	23	2.1	23	88	7	73	42	0	2	55	1.11
33689016--33689145	52	2.5	52	87	5	174	40	1	3	54	1.28
33692668--33692760	35	2.7	34	85	6	107	37	2	6	53	1.39
33692668--33692760	17	5.4	17	80	7	107	37	2	6	53	1.39
33694514--33694615	6	17.5	6	70	16	72	44	1	1	51	1.23
33694486--33694615	17	7.5	17	78	6	136	41	1	4	52	1.31
33694538--33694593	11	4.9	11	78	6	58	42	1	1	53	1.21
33694532--33694581	23	2.2	23	88	0	73	46	0	2	52	1.12
33694518--33694615	52	1.9	51	91	2	160	44	2	2	51	1.24
33694504--33694615	35	3.2	34	83	2	134	41	1	3	52	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33697616--33697665	25	2.0	26	88	11	77	38	0	2	60	1.09
33709220--33709251	3	10.7	3	100	0	64	65	0	34	0	0.93
33711786--33712178	108	3.6	109	77	11	358	29	18	10	41	1.83
33711786--33712174	56	7.1	56	76	10	329	29	18	10	41	1.84
33711786--33712178	164	2.4	164	83	5	472	29	18	10	41	1.83
33712431--33712472	17	2.4	17	88	4	57	47	2	23	26	1.64
33712580--33712670	41	2.2	41	86	4	119	49	13	15	21	1.78
33712593--33712675	41	2.0	41	92	0	139	51	10	14	22	1.73
33717921--33717970	20	2.5	21	80	9	59	34	0	2	64	1.05
33717998--33718201	57	3.6	57	79	8	209	45	9	15	29	1.78
33717990--33718201	114	1.9	114	84	4	284	43	9	16	30	1.80
33719096--33719275	90	2.0	89	86	6	247	35	21	10	32	1.87
33719127--33719308	90	2.0	90	86	3	251	36	20	10	32	1.87
33719366--33719538	10	18.2	10	72	17	113	64	2	3	29	1.25
33719366--33719513	28	5.2	28	72	13	124	66	2	3	27	1.21
33719366--33719538	38	4.6	38	74	13	133	64	2	3	29	1.25
33719808--33719859	20	2.6	20	79	11	61	40	1	0	57	1.10
33724155--33724205	21	2.4	21	80	6	59	29	27	15	27	1.96
33725200--33725251	24	2.2	24	100	0	104	40	25	7	26	1.82
33725148--33725303	76	2.1	76	91	0	249	38	23	10	26	1.88
33725224--33725413	52	3.7	51	89	3	274	37	23	11	27	1.89
33725100--33725355	128	2.0	128	87	3	372	39	22	11	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33725257--33725339	26	3.2	26	62	13	62	38	22	9	28	1.86
33733943--33734016	36	2.0	37	84	12	98	43	4	0	52	1.20
33734586--33734696	23	4.8	23	80	3	80	39	19	12	27	1.88
33734604--33734694	46	2.0	47	86	2	130	40	17	13	28	1.87
33734794--33734862	24	3.0	24	80	4	70	52	14	11	21	1.73
33740327--33740583	131	2.0	131	87	1	372	40	14	12	32	1.83
33740494--33740666	95	1.8	95	89	2	276	38	12	16	32	1.85
33740686--33741071	131	3.0	129	82	4	434	39	13	14	32	1.85
33746607--33746656	25	2.0	25	100	0	100	52	8	12	28	1.66
33755974--33756019	25	1.9	23	86	8	65	34	2	6	56	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143