genome.fa.s11.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  21  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6340843--6340868	4	6.5	4	100	0	52	26	0	0	73	0.84
6340806--6340906	45	2.2	46	82	8	118	21	2	10	64	1.39
6343486--6343583	51	1.9	52	93	2	171	34	14	20	30	1.92
6346089--6346144	22	2.5	22	79	0	67	58	7	12	21	1.57
6355450--6355525	35	2.2	35	100	0	152	34	13	22	30	1.92
6358993--6359040	25	1.9	25	87	8	71	37	2	0	60	1.09
6364026--6364050	2	12.5	2	100	0	50	48	0	0	52	1.00
6364219--6364281	22	3.3	18	79	16	56	44	4	3	47	1.40
6364969--6365029	24	2.5	24	82	10	63	57	1	1	39	1.18
6364980--6365026	23	2.0	23	88	8	69	57	0	0	42	0.98
6364980--6365042	23	2.7	23	80	9	65	58	0	1	39	1.07
6364988--6365042	24	2.3	24	80	17	62	61	0	1	36	1.06
6366211--6366254	19	2.3	19	80	7	54	4	38	0	56	1.20
6378173--6378313	51	2.8	51	85	0	183	29	21	13	34	1.92
6380866--6380943	19	4.3	18	75	19	74	52	3	5	38	1.42
6381002--6381092	19	5.1	18	74	19	75	56	1	2	40	1.19
6381007--6381103	47	2.1	47	82	3	115	59	2	2	36	1.21
6381030--6381107	27	2.8	27	76	5	75	60	2	1	35	1.19
6380894--6381093	9	21.3	9	67	19	63	55	4	2	38	1.32
6381522--6381673	9	17.0	9	69	16	93	32	1	3	61	1.23
6381570--6381672	25	4.0	26	74	18	90	33	0	0	65	1.06
6381571--6381677	17	6.2	17	72	19	78	33	0	0	64	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6381571--6381687	18	6.7	18	72	14	77	31	1	1	64	1.13
6397532--6397568	18	2.1	18	100	0	74	37	18	16	27	1.92
6398573--6398612	16	2.5	16	92	8	64	35	0	5	60	1.19
6400038--6400079	21	2.0	22	90	4	68	42	4	2	50	1.36
6404717--6404808	45	2.0	45	100	0	184	47	8	10	32	1.69
6407194--6407237	22	2.0	22	95	0	79	27	15	22	34	1.95
6414324--6414367	22	2.0	22	90	0	70	29	15	20	34	1.94
6416397--6416447	10	4.9	11	76	11	54	52	0	1	45	1.12
6416826--6416853	4	7.0	4	100	0	56	25	25	0	50	1.50
6419189--6419221	5	6.6	5	92	0	57	0	57	3	39	1.14
6419353--6419440	41	2.1	41	95	4	160	55	2	9	32	1.44
6421267--6421318	19	2.6	20	81	9	61	44	1	0	53	1.11
6427902--6427952	21	2.4	21	76	0	57	52	5	37	3	1.44
6437430--6437470	20	2.0	20	90	9	66	0	31	2	65	1.05
6440651--6440693	21	2.0	22	86	4	61	39	4	4	51	1.44
6443832--6443870	17	2.3	17	86	0	51	48	25	10	15	1.76
6460041--6460091	22	2.4	21	87	6	75	19	17	11	50	1.76
6460189--6460236	23	2.0	23	84	11	62	25	20	4	50	1.66
6460456--6460489	11	2.9	12	86	8	52	47	0	0	52	1.00
6463756--6463806	22	2.4	21	87	6	75	19	17	11	50	1.76
6464171--6464206	11	3.2	11	92	4	54	47	0	0	52	1.00
6464573--6464597	13	1.9	13	100	0	50	28	40	24	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6467791--6467854	31	2.1	31	82	8	78	37	4	15	42	1.68
6468021--6468085	31	2.2	30	83	5	78	50	9	6	33	1.59
6473234--6473292	29	2.0	29	86	0	82	33	35	8	22	1.84
6490798--6490982	42	4.4	42	89	0	262	24	27	9	38	1.87
6493171--6493347	91	1.9	91	98	0	345	33	14	28	23	1.94
6495031--6495133	47	2.2	47	85	1	136	25	23	18	33	1.97
6495031--6495162	46	2.8	47	81	6	117	25	21	18	33	1.97
6497652--6497688	19	1.9	19	88	0	56	18	2	2	75	1.04
6500477--6500543	32	2.1	32	94	0	116	26	10	25	37	1.88
6500438--6500593	85	1.8	85	91	2	260	26	14	24	35	1.93
6500509--6500645	52	2.6	53	82	5	170	27	15	24	33	1.95
6501143--6501442	53	5.7	53	90	2	406	35	23	13	28	1.92
6508046--6508263	41	5.2	41	87	2	274	27	26	9	37	1.87
6508046--6508263	82	2.6	83	86	5	325	27	26	9	37	1.87
6512044--6512098	22	2.5	22	93	0	101	25	14	18	41	1.88
6512162--6512195	15	2.3	15	94	0	59	23	0	2	73	0.97
6517240--6517465	111	2.0	111	100	0	452	39	23	12	24	1.89
6518232--6518289	30	1.9	30	89	0	89	36	15	12	36	1.85
6518272--6518310	20	2.0	20	94	0	69	51	7	15	25	1.70
6518275--6518332	20	2.9	19	82	5	53	56	5	17	20	1.59
6525970--6526020	25	2.0	25	88	0	75	58	3	21	15	1.53
6526744--6526811	30	2.3	29	80	12	75	50	10	0	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6530154--6530198	16	2.9	16	80	9	58	35	4	0	60	1.17
6530317--6530448	25	5.6	25	68	20	88	75	8	9	7	1.21
6530345--6530420	20	3.5	20	72	18	71	73	11	6	7	1.24
6530320--6530615	45	6.3	44	77	16	301	71	8	9	10	1.30
6530273--6530576	98	3.2	95	75	14	277	72	6	10	10	1.28
6530492--6530615	21	5.8	21	72	14	92	75	8	6	9	1.18
6530339--6530733	144	2.7	142	92	5	623	70	7	10	11	1.35
6530639--6530712	21	3.6	21	72	20	66	75	6	5	12	1.16
6530638--6530733	42	2.2	44	90	7	153	75	6	7	11	1.19
6530636--6530719	20	4.1	20	76	14	82	77	5	4	11	1.10
6530531--6530714	102	1.8	101	91	6	313	70	7	10	11	1.33
6530853--6530903	25	2.0	25	84	7	66	29	11	0	58	1.33
6530854--6530910	27	2.2	25	81	6	60	31	8	0	59	1.28
6532083--6532157	24	3.1	24	92	0	123	29	12	4	54	1.55
6533310--6533376	13	5.2	13	76	7	55	49	2	11	35	1.55
6535513--6535547	2	17.5	2	100	0	70	48	0	0	51	1.00
6535837--6536135	158	1.9	158	85	1	411	21	22	25	31	1.98
6547597--6547629	12	2.6	13	85	4	50	15	3	12	69	1.30
6547654--6547721	34	2.0	34	85	5	93	23	22	8	45	1.80
6547674--6547733	17	3.5	17	77	4	59	21	18	11	48	1.80
6553395--6553420	8	3.2	8	100	0	52	15	0	0	84	0.62
6559916--6559975	29	2.1	29	96	0	111	38	36	3	21	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6567504--6567533	15	1.9	16	93	6	53	40	3	0	56	1.16
6571181--6571207	2	13.5	2	100	0	54	48	0	0	51	1.00
6571249--6571279	9	3.4	9	95	0	53	64	0	0	35	0.94
6571775--6571866	6	16.0	6	75	13	77	43	2	4	50	1.34
6571775--6571866	17	5.4	17	78	6	69	43	2	4	50	1.34
6572870--6572897	14	2.0	14	100	0	56	21	21	21	35	1.96
6573608--6573694	30	2.9	30	93	1	149	37	20	0	41	1.53
6573608--6573746	60	2.4	58	81	12	160	40	20	1	37	1.62
6573612--6573762	30	5.1	29	81	8	144	40	21	1	36	1.62
6573741--6573830	29	3.1	29	66	19	71	33	27	1	37	1.64
6573739--6573875	58	2.4	57	86	4	195	31	29	1	37	1.67
6576800--6576958	49	3.2	49	74	11	171	18	24	18	38	1.93
6576769--6577307	99	5.5	99	76	11	374	17	24	19	38	1.93
6576738--6577003	49	5.4	48	69	13	132	16	25	20	37	1.93
6577015--6577306	97	2.9	97	78	10	311	17	24	18	39	1.92
6577357--6578183	409	2.0	410	94	1	1453	31	14	17	36	1.90
6583316--6583344	9	3.2	9	100	0	58	41	10	10	37	1.73
6591316--6591355	16	2.6	15	80	7	53	45	5	2	47	1.38
6593972--6594174	59	3.4	58	80	9	198	35	5	27	31	1.79
6594046--6594115	29	2.4	30	88	7	99	37	5	22	34	1.78
6594093--6594258	29	5.7	29	75	14	126	41	1	25	31	1.66
6594033--6594258	59	3.8	59	81	6	244	39	3	25	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6595351--6595417	3	21.7	3	78	6	53	43	0	1	55	1.09
6595350--6595417	19	3.6	19	73	16	70	44	0	1	54	1.09
6595905--6595959	25	2.2	25	90	0	83	25	12	41	20	1.87
6596179--6596254	18	4.4	17	77	6	73	60	2	2	34	1.24
6600679--6600738	30	2.0	30	100	0	120	36	30	3	30	1.74
6602757--6602814	13	4.6	13	76	18	52	44	1	0	53	1.10
6602757--6602814	26	2.3	25	82	5	73	44	1	0	53	1.10
6602770--6602815	13	3.5	13	82	11	58	41	0	0	58	0.98
6609827--6609885	2	29.5	2	96	0	109	50	1	0	47	1.11
6609906--6609963	13	4.6	13	76	18	52	44	1	0	53	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143