genome.fa.s11.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  31  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9134254--9134299	23	2.0	23	83	8	58	54	0	2	43	1.12
9134277--9134319	19	2.2	20	84	12	54	53	2	0	44	1.13
9137182--9137266	38	2.2	38	95	2	152	31	0	22	45	1.52
9138608--9138712	43	2.5	43	84	6	142	30	9	11	48	1.71
9163206--9163295	27	3.3	27	88	0	135	35	21	17	25	1.95
9166248--9166290	18	2.4	17	81	11	50	69	0	4	25	1.07
9166765--9166807	19	2.3	19	87	0	59	60	2	2	34	1.22
9166839--9166872	9	3.7	9	92	4	50	70	2	0	26	1.01
9171328--9171382	24	2.3	24	96	0	101	29	25	21	23	1.99
9171376--9171440	27	2.4	27	89	0	94	38	23	15	23	1.92
9174210--9174246	16	2.4	16	83	16	51	72	2	8	16	1.19
9174213--9174247	17	2.2	16	90	10	54	74	2	5	17	1.14
9176069--9176111	14	3.0	14	82	3	50	13	4	6	74	1.19
9179815--9179861	21	2.2	21	84	0	58	34	25	12	27	1.92
9180432--9180522	41	2.2	40	82	7	103	24	25	9	40	1.85
9180471--9180682	41	5.1	42	81	2	178	25	25	11	37	1.90
9180515--9180682	41	4.0	42	84	3	187	23	26	11	38	1.90
9180516--9180696	84	2.2	83	79	5	193	24	27	11	37	1.89
9181958--9182016	29	2.0	29	90	6	93	35	13	8	42	1.75
9183247--9183432	65	2.9	63	84	10	227	33	15	11	39	1.84
9185834--9185883	22	2.3	21	77	12	57	84	10	0	6	0.79
9186174--9186218	22	2.0	22	82	0	54	68	6	20	4	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9186967--9187018	27	1.9	27	84	7	70	21	5	3	69	1.26
9187252--9187306	29	1.9	29	85	10	78	18	10	1	69	1.27
9192559--9193023	98	4.8	97	71	13	335	35	18	17	27	1.94
9192612--9192941	95	3.4	95	74	11	310	33	18	19	27	1.96
9192558--9193027	196	2.4	195	86	2	638	35	18	17	28	1.94
9192955--9193081	50	2.5	50	83	1	182	37	17	13	31	1.88
9193256--9193633	81	4.7	80	83	5	404	35	26	14	24	1.94
9193256--9193678	40	10.4	40	80	7	372	35	25	14	24	1.93
9193242--9193795	40	13.2	42	76	12	220	36	24	14	24	1.93
9193651--9193795	45	3.2	45	78	13	125	35	24	13	26	1.92
9195536--9195590	26	2.2	25	84	12	69	23	9	0	67	1.19
9195536--9195591	25	2.2	26	87	9	80	23	8	0	67	1.18
9195803--9196004	109	1.9	109	85	2	280	27	12	17	42	1.86
9200852--9201031	92	1.9	93	86	7	260	25	17	27	28	1.98
9203964--9204083	58	2.1	58	91	0	195	49	19	0	31	1.49
9205590--9205632	21	2.2	18	88	12	59	30	4	6	58	1.45
9233090--9233143	19	3.0	18	84	10	58	35	3	1	59	1.26
9233449--9233488	20	2.0	21	85	9	57	45	2	0	52	1.14
9235367--9235404	16	2.4	16	86	4	51	31	2	0	65	1.06
9237967--9238029	24	2.6	24	87	0	90	49	11	14	25	1.76
9251948--9252024	22	3.4	21	82	10	73	38	22	28	10	1.87
9251957--9252022	22	2.8	22	86	9	78	39	24	24	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9266328--9266361	3	11.3	3	100	0	68	32	0	0	67	0.91
9283961--9283991	2	15.5	2	100	0	62	51	0	0	48	1.00
9284443--9284489	18	2.6	19	80	10	53	23	4	2	70	1.16
9288825--9290000	388	3.0	385	94	2	1994	33	12	12	41	1.80
9293934--9293977	4	11.0	4	95	0	79	50	27	0	22	1.50
9298737--9298763	3	9.0	3	100	0	54	0	33	0	66	0.92
9305976--9306015	21	2.0	20	85	5	53	50	0	5	45	1.23
9307946--9308048	16	5.8	16	73	18	62	58	0	4	35	1.26
9315755--9315957	58	3.4	60	80	3	203	25	19	17	38	1.93
9315782--9316007	118	1.9	118	81	6	269	27	17	17	38	1.92
9319735--9319847	27	4.2	27	83	4	140	24	11	22	41	1.87
9321766--9321839	37	2.0	37	86	5	105	21	22	6	48	1.73
9322850--9322891	18	2.6	17	82	17	54	45	0	0	54	0.99
9331883--9331911	4	7.2	4	100	0	58	75	0	0	24	0.80
9333960--9333999	20	2.0	20	90	0	62	27	12	7	52	1.66
9335290--9335331	21	2.0	21	95	0	75	26	14	26	33	1.94
9335708--9335774	26	2.4	27	82	9	73	37	13	7	41	1.73
9335708--9335819	30	3.8	30	72	9	81	35	13	9	41	1.78
9337808--9338254	195	2.3	194	79	6	467	25	27	19	27	1.99
9341661--9341754	17	5.4	17	75	9	82	39	3	4	53	1.37
9341661--9341754	35	2.7	34	81	6	107	39	3	4	53	1.37
9342415--9342471	20	2.9	20	85	14	75	56	5	3	35	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9342415--9342472	18	3.0	19	85	14	75	55	5	3	36	1.39
9343533--9343661	29	4.4	30	79	9	124	35	24	3	35	1.74
9343533--9343731	59	3.4	59	83	7	203	35	25	3	36	1.72
9343559--9343726	30	5.7	30	74	12	125	36	25	2	36	1.69
9343709--9343869	29	5.6	28	71	13	98	32	20	5	40	1.76
9343574--9343900	58	5.6	59	77	10	282	34	23	4	37	1.75
9348208--9348252	23	2.0	23	81	0	54	31	20	2	46	1.62
9350092--9350226	40	3.4	38	73	12	96	30	28	20	21	1.98
9350124--9350227	37	2.7	38	76	5	93	31	26	19	22	1.97
9351093--9351151	11	4.9	12	76	13	50	52	1	0	45	1.10
9351747--9351791	12	3.8	13	72	22	53	77	2	20	0	0.87
9351745--9351809	22	2.9	21	77	22	62	76	1	20	1	0.94
9353042--9353425	49	7.9	48	78	10	282	39	21	25	14	1.91
9353031--9353455	98	4.3	98	80	4	448	39	20	25	14	1.91
9353027--9353427	197	2.1	193	84	4	518	39	21	24	13	1.90
9353716--9353820	39	2.7	39	96	0	192	20	27	25	26	1.99
9353706--9353861	39	4.0	37	71	16	118	23	30	21	25	1.99
9353872--9354737	206	4.2	206	89	1	1205	34	19	22	22	1.96
9355106--9355160	11	4.7	12	72	19	53	36	1	1	60	1.18
9355106--9355161	12	4.8	11	79	16	60	37	1	1	58	1.19
9355088--9355181	17	5.4	17	80	8	109	41	1	2	55	1.19
9355088--9355181	35	2.7	34	80	11	109	41	1	2	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9355827--9355883	20	2.9	20	85	14	75	56	5	3	35	1.39
9355832--9355902	15	4.1	17	79	20	76	56	2	2	38	1.29
9356330--9356484	29	5.3	28	75	12	125	35	23	4	36	1.75
9356316--9356712	59	6.8	59	79	10	356	34	23	4	37	1.76
9356378--9356543	29	5.7	29	74	13	126	36	25	3	34	1.74
9356350--9356624	29	9.5	28	70	18	95	35	24	4	35	1.77
9356301--9356712	116	3.5	115	81	9	423	33	24	4	37	1.76
9356301--9356712	117	3.5	117	80	7	387	33	24	4	37	1.76
9365984--9366017	14	2.3	15	90	5	52	50	11	0	38	1.39
9368670--9368694	11	2.3	11	100	0	50	44	8	0	48	1.32
9375923--9375965	21	2.0	22	82	13	54	32	16	2	48	1.58
9376667--9376767	36	2.8	36	90	3	150	19	25	16	37	1.93
9381353--9381468	61	1.9	58	86	5	160	41	2	5	50	1.38
9381355--9381489	58	2.3	60	82	8	152	42	2	5	48	1.42
9384862--9385117	83	3.1	82	86	3	336	33	14	14	37	1.87
9388720--9388888	29	5.8	28	79	11	128	34	2	25	37	1.71
9388678--9388888	29	7.2	30	75	11	127	35	2	25	37	1.69
9388757--9388888	29	4.5	29	83	13	139	33	3	25	37	1.72
9389887--9389933	3	15.0	3	86	8	67	31	0	0	68	0.90
9389886--9389948	12	4.6	14	82	15	55	31	1	0	66	1.01
9390535--9390615	6	13.7	6	78	7	76	56	4	0	38	1.21
9390535--9390626	11	7.8	12	76	8	82	58	4	0	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9390535--9390609	30	2.5	30	89	4	107	57	4	0	38	1.18
9390533--9390626	17	5.7	17	79	15	108	59	4	0	36	1.17
9390541--9390617	30	2.6	29	86	10	102	57	5	0	37	1.21
9390535--9390627	6	15.8	6	76	10	59	59	4	0	36	1.17
9390533--9390630	30	3.1	29	73	24	74	60	4	0	35	1.16
9394863--9394911	20	2.4	20	80	12	55	71	4	6	18	1.23
9412513--9412580	23	3.0	23	77	8	68	44	1	1	52	1.19
9413510--9413572	29	2.1	29	82	11	83	38	9	3	49	1.51
9413518--9413572	28	1.9	29	88	3	85	32	10	3	52	1.54
9413651--9413693	19	2.2	19	87	8	59	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143