genome.fa.s11.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  19  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5865894--5865990	47	2.1	47	86	0	131	9	25	21	43	1.82
5867092--5867193	34	3.0	34	89	0	150	29	8	29	32	1.87
5869299--5869339	21	1.9	22	90	5	66	75	4	0	19	0.98
5869445--5869532	19	4.4	19	73	12	70	63	1	1	34	1.09
5869461--5869537	40	1.9	40	84	5	102	59	1	1	37	1.14
5869448--5869532	30	2.8	30	72	3	80	64	1	1	32	1.08
5871024--5871066	2	21.5	2	90	0	68	46	0	4	48	1.22
5874514--5874548	18	1.9	18	94	0	61	25	0	5	68	1.11
5875469--5875509	2	20.5	2	94	0	73	48	0	0	51	1.00
5875461--5875509	8	5.6	9	86	13	59	46	0	2	51	1.12
5875461--5875509	12	4.1	12	91	0	71	46	0	2	51	1.12
5882286--5882369	36	2.3	36	82	8	91	45	5	4	44	1.49
5882286--5882408	39	3.2	41	73	17	113	47	6	3	43	1.45
5882501--5882542	15	2.6	16	81	11	50	47	2	0	50	1.14
5883392--5883443	15	3.4	15	78	5	59	51	1	0	46	1.12
5892302--5892422	59	2.1	59	96	0	224	29	33	16	20	1.95
5893781--5893844	3	21.3	3	83	0	83	3	3	28	65	1.23
5900545--5900606	32	1.9	32	83	0	79	35	8	3	53	1.47
5901968--5902023	17	3.4	17	73	14	55	25	0	17	57	1.41
5901968--5902032	32	2.0	32	82	5	78	24	1	20	53	1.54
5904571--5904605	18	1.9	18	88	11	54	40	0	2	57	1.14
5905359--5905428	23	3.0	23	77	10	79	27	14	17	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5907708--5907753	21	2.2	21	96	0	83	10	13	15	60	1.58
5928347--5928396	23	2.0	26	81	14	61	32	20	6	42	1.76
5938684--5938862	62	2.9	62	84	6	224	29	20	14	35	1.92
5938774--5938969	106	1.8	106	85	5	279	31	18	13	36	1.89
5938880--5938996	61	1.9	60	91	5	191	29	18	16	35	1.93
5942730--5942777	12	3.7	12	77	20	51	47	0	10	41	1.37
5942908--5943432	83	6.3	83	92	2	824	38	5	4	51	1.44
5943597--5943651	20	2.8	20	91	2	85	10	30	23	34	1.89
5945850--5945941	30	3.1	30	83	9	91	26	7	5	60	1.45
5946795--5947140	121	2.8	120	90	4	534	30	17	22	28	1.97
5946795--5947140	61	5.7	60	89	3	525	30	17	22	28	1.97
5947112--5947170	31	1.9	31	100	0	118	20	18	35	25	1.95
5949993--5950091	50	2.0	50	90	4	155	38	5	8	48	1.55
5951740--5951830	36	2.5	38	78	20	97	31	6	8	52	1.58
5963493--5963524	16	2.1	16	88	11	50	46	18	0	34	1.49
5965327--5965574	123	2.0	122	92	2	417	38	7	5	48	1.53
5965713--5965744	14	2.3	15	89	10	50	43	3	0	53	1.16
5966326--5966385	30	2.0	30	90	3	95	43	8	10	38	1.68
5970251--5970299	13	3.8	13	81	10	64	38	6	14	40	1.71
5972704--5972729	2	13.0	2	100	0	52	50	0	0	50	1.00
5986118--5986260	40	3.6	40	80	1	153	27	16	18	38	1.91
5993005--5993046	17	2.4	17	92	4	66	52	2	23	21	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6009184--6009234	21	2.4	21	83	0	66	33	5	7	52	1.54
6010922--6010949	14	2.0	14	100	0	56	35	0	0	64	0.94
6011961--6012032	32	2.3	32	83	7	85	26	8	18	47	1.76
6012241--6012365	66	1.9	66	96	1	234	59	4	8	28	1.46
6017759--6017810	22	2.4	22	86	0	68	23	15	9	51	1.72
6019836--6020026	97	2.0	97	89	2	294	37	15	18	28	1.91
6020316--6020438	60	2.1	60	81	7	144	37	4	25	32	1.77
6020352--6020439	30	2.9	30	82	0	122	37	5	23	32	1.79
6021165--6021250	17	5.1	17	79	0	100	58	4	1	36	1.27
6021165--6021259	34	2.8	34	81	1	118	56	4	2	36	1.30
6021667--6021706	20	2.0	21	90	5	64	32	10	0	57	1.32
6022356--6022392	2	18.0	2	88	5	56	48	2	2	45	1.30
6024602--6024631	6	5.0	6	95	0	51	16	63	3	16	1.44
6025803--6025851	2	24.5	2	100	0	98	51	0	48	0	1.00
6038499--6038537	20	2.0	20	85	10	53	71	0	10	17	1.12
6043321--6043351	16	1.9	16	93	0	53	29	0	0	70	0.87
6044033--6044086	11	5.1	11	76	17	51	38	3	0	57	1.17
6044035--6044093	6	9.8	6	73	14	50	38	3	1	55	1.26
6044051--6044078	14	2.0	14	100	0	56	35	7	0	57	1.26
6046119--6046338	58	3.8	57	79	8	171	34	25	3	37	1.72
6046119--6046354	29	8.1	30	67	23	114	34	25	3	36	1.73
6046146--6046356	58	3.7	58	81	6	232	33	26	2	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6058599--6059664	76	14.0	76	94	0	1756	34	15	17	32	1.91
6060013--6060082	11	6.0	11	76	15	52	38	2	0	58	1.13
6060014--6060089	6	12.8	6	74	13	68	39	2	1	56	1.21
6060014--6060088	17	4.6	17	85	9	102	38	2	1	57	1.21
6060047--6060074	14	2.0	14	100	0	56	35	7	0	57	1.26
6060030--6060088	31	1.9	31	92	0	100	38	3	1	55	1.26
6062122--6062284	29	5.6	28	72	17	104	34	25	3	36	1.74
6062122--6062341	58	3.8	57	81	8	198	32	26	4	36	1.77
6062181--6062281	30	3.4	29	76	16	100	35	24	2	36	1.71
6062187--6062342	29	5.4	29	70	22	105	31	28	4	35	1.77
6062149--6062358	116	1.8	116	85	6	300	32	27	4	36	1.76
6062149--6062370	58	3.8	58	84	4	252	31	28	4	35	1.76
6062146--6062395	116	2.2	113	80	9	272	32	28	3	36	1.74
6066026--6066061	9	4.0	9	85	0	54	47	8	19	25	1.77
6067981--6068031	26	2.0	25	85	11	68	39	9	1	49	1.47
6068018--6068078	21	3.0	21	73	17	58	45	4	0	49	1.23
6068685--6068723	18	2.2	18	86	4	53	46	7	17	28	1.76
6079684--6079758	31	2.4	31	77	4	80	53	2	2	41	1.29
6081778--6081818	14	2.7	16	81	14	59	53	0	0	46	1.00
6088059--6088099	20	2.0	21	90	9	66	51	2	0	46	1.14
6088864--6088927	29	2.2	29	85	0	83	39	10	14	35	1.81
6090542--6090574	14	2.4	14	90	10	50	81	0	0	18	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6090540--6090582	8	5.9	7	82	17	52	79	0	0	20	0.74
6090695--6090752	22	2.5	22	84	15	66	56	3	3	36	1.33
6090695--6090768	22	3.2	21	77	21	60	56	2	2	37	1.28
6090695--6090768	21	3.2	21	78	17	60	56	2	2	37	1.28
6093242--6093292	17	2.9	17	80	13	50	52	0	5	41	1.25
6093384--6093439	20	2.9	18	84	12	60	39	0	14	46	1.44
6093596--6093705	39	2.8	40	83	2	134	42	14	6	36	1.71
6093782--6093823	20	2.0	22	86	9	61	54	2	4	38	1.34
6093856--6093942	38	2.3	38	84	4	104	55	5	4	34	1.44
6094758--6094814	26	2.2	24	82	11	69	19	1	19	59	1.46
6095441--6095533	19	4.6	20	74	11	82	32	3	1	63	1.17
6095461--6095533	21	3.5	21	80	12	87	30	2	0	67	1.05
6095441--6095538	9	9.8	9	70	17	52	32	3	1	63	1.17
6095636--6095721	10	9.4	10	75	13	71	39	2	0	58	1.11
6095636--6095723	27	3.2	27	93	4	142	39	2	0	57	1.11
6106446--6106484	18	2.1	19	85	4	53	61	0	0	38	0.96
6107887--6107980	19	4.8	19	70	12	66	63	2	2	31	1.18
6107929--6107993	30	2.2	30	82	0	76	66	0	3	30	1.07
6107905--6107992	41	2.2	40	85	6	115	63	1	2	32	1.14
6109675--6109746	12	6.2	12	67	12	51	37	18	12	31	1.88
6109700--6109769	23	3.0	23	85	2	95	41	18	14	25	1.88
6109681--6109769	47	1.9	46	86	2	124	40	17	13	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6121096--6121167	16	4.5	16	87	0	108	38	5	27	27	1.79
6121149--6121242	44	2.1	46	88	7	140	29	5	26	38	1.78
6121337--6121482	58	2.5	55	83	13	177	50	0	2	46	1.20
6127500--6127546	25	1.9	24	82	4	58	44	2	0	53	1.12
6138971--6139170	29	6.8	30	72	19	129	39	4	26	30	1.75
6138943--6139136	29	6.7	29	70	22	124	38	3	26	31	1.74
6138940--6139112	59	2.9	59	91	4	262	38	4	27	30	1.75
6138940--6139136	59	3.4	59	88	4	231	38	4	26	30	1.75
6139095--6139217	29	4.2	29	78	9	106	41	4	22	31	1.73
6139118--6139239	60	2.1	59	84	4	156	36	4	24	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143