genome.fa.s11.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  83  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26457738--26457793	26	2.2	25	83	3	67	23	0	5	71	1.06
26459777--26459853	40	1.9	40	94	0	136	40	9	22	28	1.84
26465250--26465588	52	6.6	52	86	2	468	36	22	14	26	1.92
26465250--26465588	154	2.2	155	85	2	464	36	22	14	26	1.92
26467764--26467983	41	5.4	40	82	4	122	27	25	28	18	1.98
26467845--26468162	41	7.8	41	86	2	365	22	27	28	22	1.99
26467785--26468167	123	3.1	123	84	4	443	22	26	28	22	1.99
26468286--26468318	13	2.5	13	95	0	57	9	54	3	33	1.47
26470742--26470774	13	2.5	13	86	13	50	51	0	0	48	1.00
26470637--26470780	66	2.2	67	90	6	231	47	2	3	45	1.34
26470700--26472095	335	4.2	335	94	1	2341	44	3	4	47	1.39
26470765--26472095	112	11.9	112	96	0	2256	44	3	4	47	1.40
26477685--26477722	11	3.5	11	80	20	53	31	23	44	0	1.54
26477541--26477698	66	2.4	66	89	0	244	43	17	24	14	1.87
26477685--26477725	21	2.0	21	100	0	82	31	24	43	0	1.54
26477685--26477736	21	2.5	21	90	6	70	34	21	44	0	1.52
26478017--26478260	43	5.7	42	87	1	326	25	22	29	22	1.99
26478017--26478261	85	2.8	85	87	4	341	25	22	28	22	1.99
26485197--26485252	12	4.8	11	79	14	51	41	1	1	55	1.21
26485179--26485254	35	2.2	35	92	0	125	42	1	2	53	1.23
26485179--26485254	17	4.3	18	85	6	102	42	1	2	53	1.23
26486048--26486088	13	3.2	13	80	16	50	58	0	2	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26487154--26487299	30	4.9	31	75	12	103	34	23	2	39	1.69
26487154--26487209	29	1.9	30	85	10	80	35	21	1	41	1.64
26487227--26487371	30	4.9	29	75	8	130	37	26	1	34	1.65
26487256--26487418	59	2.7	59	84	7	188	38	23	2	34	1.69
26487227--26487389	30	5.5	30	74	10	120	38	24	1	35	1.66
26487373--26487475	29	3.5	28	70	17	75	31	20	7	40	1.81
26493202--26493298	5	19.0	5	74	21	60	80	1	14	4	0.91
26493202--26493297	10	9.4	10	75	12	70	81	1	13	4	0.89
26493202--26493297	6	16.5	6	73	20	71	81	1	13	4	0.89
26493202--26493297	41	2.4	42	77	12	110	81	1	13	4	0.89
26494507--26494843	48	6.9	48	80	2	377	39	22	25	12	1.89
26494494--26494856	97	3.7	97	84	1	431	40	22	25	12	1.88
26495119--26495363	78	3.1	79	78	1	233	25	30	18	25	1.98
26495415--26495571	72	2.3	69	83	6	185	36	24	17	21	1.95
26495477--26496335	206	4.2	206	88	0	1225	35	18	22	23	1.95
26495477--26496335	411	2.1	412	87	0	1245	35	18	22	23	1.95
26496661--26496770	35	3.2	34	85	7	134	42	0	2	53	1.21
26496693--26496770	6	13.5	6	72	17	67	46	1	1	51	1.17
26496696--26496751	11	4.9	11	82	10	60	39	1	1	57	1.20
26496661--26496770	52	2.1	52	89	0	166	42	0	2	53	1.21
26496661--26496770	17	6.4	17	84	7	141	42	0	2	53	1.21
26498708--26498886	58	3.1	58	82	3	191	32	25	3	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26498686--26498886	29	6.9	29	73	12	121	33	25	3	36	1.73
26498758--26498974	29	7.5	28	71	12	127	32	24	5	37	1.77
26498725--26498974	58	4.3	57	77	9	179	33	24	4	37	1.77
26505443--26505484	14	3.0	14	86	10	59	61	0	2	35	1.09
26507471--26507525	22	2.5	22	84	3	74	34	3	9	52	1.50
26508208--26508293	27	3.1	27	71	14	66	58	3	3	34	1.32
26514074--26514122	12	3.8	12	78	19	53	22	2	0	75	0.90
26514083--26514267	67	2.9	64	84	9	234	42	0	2	54	1.19
26514245--26514272	4	7.0	4	100	0	56	75	0	0	25	0.81
26519379--26519437	6	9.0	6	80	12	55	79	1	18	0	0.81
26519359--26519430	8	8.6	8	72	17	58	80	1	13	4	0.92
26519377--26519436	14	4.3	15	76	18	58	81	1	16	0	0.77
26519356--26519435	26	3.2	26	83	3	74	81	1	13	3	0.89
26519380--26519437	20	2.8	20	85	10	82	79	1	18	0	0.82
26520348--26521633	159	8.1	159	95	1	2213	31	24	19	24	1.98
26520348--26521633	80	16.1	80	95	1	2246	31	24	19	24	1.98
26522152--26522199	12	3.7	12	77	20	51	22	2	0	75	0.91
26522160--26522323	63	2.5	64	88	8	235	39	0	2	57	1.16
26522160--26522344	67	2.9	65	85	9	238	43	0	2	54	1.16
26524342--26524378	16	2.3	16	100	0	74	51	10	5	32	1.60
26530194--26530258	23	2.8	23	85	0	85	36	6	10	46	1.64
26537530--26537592	29	2.1	31	85	5	85	30	12	11	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26537815--26537929	60	1.9	61	87	3	169	46	13	17	22	1.82
26537815--26537908	29	3.2	29	64	7	73	51	11	15	21	1.75
26540960--26541018	27	2.1	27	87	9	84	27	11	28	32	1.92
26541043--26541195	29	5.2	29	66	17	91	35	1	27	34	1.68
26541000--26541198	59	3.4	59	85	0	263	35	2	30	32	1.71
26542339--26542377	14	2.6	16	84	12	55	33	2	0	64	1.08
26542338--26542423	22	3.9	22	71	8	68	37	3	1	58	1.23
26543171--26543291	6	20.8	6	71	13	83	50	1	2	45	1.25
26543207--26543291	41	2.1	41	90	0	134	54	0	3	42	1.17
26543177--26543257	17	4.7	17	85	7	101	51	2	1	44	1.22
26543248--26543292	17	2.6	18	89	3	65	51	0	4	44	1.21
26543582--26544422	76	11.0	76	92	0	1385	33	17	14	34	1.90
26544377--26544703	92	3.6	92	94	1	575	27	18	18	35	1.94
26544392--26544533	40	3.1	46	66	21	109	26	18	18	36	1.94
26556905--26557045	29	4.9	29	68	17	96	38	4	26	29	1.78
26556881--26557077	58	3.4	57	83	4	232	36	4	28	30	1.77
26558228--26558266	14	2.6	16	84	12	55	33	2	0	64	1.08
26558227--26558312	22	3.9	22	71	8	68	37	3	1	58	1.23
26559086--26559127	11	3.7	11	87	6	57	54	2	2	40	1.26
26559102--26559146	17	2.6	18	85	3	65	51	0	4	44	1.21
26559060--26559146	6	15.0	6	73	15	67	47	2	2	48	1.27
26559081--26559137	23	2.4	23	88	5	78	47	3	3	45	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26562770--26562808	16	2.3	17	86	8	53	74	10	0	15	1.07
26569560--26569623	26	2.4	27	82	15	80	21	1	4	71	1.12
26569557--26569624	32	2.1	31	81	10	75	20	1	4	73	1.08
26569495--26569644	71	2.1	75	82	5	182	20	6	4	68	1.29
26570803--26570898	47	2.0	47	100	0	192	36	8	42	12	1.73
26575735--26575774	20	2.0	20	90	0	62	82	0	15	2	0.77
26577639--26578452	99	8.2	99	80	4	685	35	15	30	18	1.92
26577696--26577959	50	5.3	49	70	10	205	33	15	31	18	1.93
26577643--26578452	49	16.4	49	69	7	284	35	15	30	18	1.92
26577591--26578452	198	4.4	198	79	3	781	35	15	29	18	1.92
26577693--26578200	148	3.4	148	72	11	371	35	15	31	17	1.92
26577552--26578481	395	2.3	395	77	6	909	35	15	29	19	1.93
26578550--26578996	40	11.3	40	72	14	295	32	23	17	26	1.96
26578550--26579018	78	5.9	77	83	6	494	32	23	17	26	1.96
26578550--26579018	156	3.0	156	84	3	544	32	23	17	26	1.96
26578590--26579019	38	10.9	39	71	12	265	33	23	17	26	1.96
26578550--26578976	234	1.8	236	85	4	601	32	23	17	26	1.97
26582654--26582699	20	2.3	20	82	13	60	28	4	15	52	1.61
26583657--26583695	14	2.8	13	79	20	51	30	20	7	41	1.80
26583703--26583730	3	9.3	3	100	0	56	67	0	0	32	0.91
26588741--26589269	49	10.8	49	80	5	480	44	17	17	19	1.86
26588731--26589269	147	3.7	146	80	6	556	44	17	17	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26590220--26590277	12	4.6	13	71	14	50	29	1	1	67	1.11
26590401--26590514	4	27.2	4	69	22	58	21	2	5	71	1.19
26590400--26590512	10	11.3	9	66	24	50	20	2	5	71	1.18
26590349--26590492	72	2.0	73	82	6	177	19	4	5	70	1.26
26590688--26590764	24	3.3	23	78	18	72	25	2	6	64	1.30
26590688--26590775	45	2.0	42	81	14	99	27	3	5	63	1.33
26598073--26598120	24	2.0	25	87	4	71	41	0	2	56	1.11
26602559--26602726	34	5.1	34	77	5	148	45	11	13	29	1.78
26602595--26602726	68	1.9	68	83	3	167	47	9	12	30	1.73
26605597--26606240	232	2.8	226	84	3	717	34	18	18	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143