genome.fa.s11.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  39  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12104503--12104543	17	2.4	17	80	19	50	46	14	21	17	1.84
12117044--12117219	97	1.8	97	81	4	221	39	13	17	28	1.88
12117494--12117788	29	10.1	27	73	18	204	30	3	27	38	1.73
12117469--12117799	59	5.6	59	86	1	423	32	4	26	36	1.76
12117469--12117799	117	2.8	118	89	1	470	32	4	26	36	1.76
12117490--12117852	30	12.3	29	72	17	243	31	4	26	37	1.76
12118712--12118777	9	6.7	9	72	17	51	46	3	1	48	1.26
12119392--12119477	6	15.0	6	67	22	51	50	3	1	45	1.26
12119402--12119477	17	4.5	16	83	3	89	50	3	1	44	1.29
12119402--12119477	34	2.2	34	88	0	107	50	3	1	44	1.29
12120533--12120810	138	2.0	139	86	6	386	45	6	7	40	1.58
12121765--12121818	26	2.1	26	100	0	108	22	27	7	42	1.80
12129305--12129532	43	5.3	43	93	3	354	21	32	21	24	1.98
12129305--12129532	87	2.6	87	91	3	381	21	32	21	24	1.98
12129830--12129882	21	2.5	21	90	0	79	1	47	18	32	1.60
12129868--12130025	66	2.4	66	90	0	244	15	24	17	43	1.87
12135450--12135516	33	2.1	33	94	2	118	43	8	4	43	1.56
12135536--12135672	22	6.3	21	70	17	93	51	0	1	45	1.15
12135536--12135617	4	20.0	4	73	14	69	52	0	1	46	1.08
12135575--12135617	18	2.4	18	84	7	61	53	0	0	46	1.00
12135635--12135672	12	3.4	11	85	14	51	55	0	0	44	0.99
12135693--12136751	112	9.9	105	83	9	1130	47	4	2	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12135744--12135872	8	15.1	8	67	19	57	52	2	1	43	1.23
12135736--12135869	18	7.2	18	68	19	55	52	2	1	44	1.22
12135742--12135883	22	6.4	22	63	19	62	52	2	1	44	1.21
12135806--12135842	10	3.9	10	86	13	51	59	5	0	35	1.20
12135918--12135954	10	3.9	10	82	13	51	56	8	0	35	1.29
12135635--12136267	216	2.9	216	91	3	998	48	4	2	45	1.33
12136065--12136357	84	3.2	86	77	17	324	49	4	2	44	1.34
12136071--12136714	36	17.8	35	64	20	181	48	4	2	45	1.34
12135938--12136567	299	2.1	300	96	0	1145	47	4	2	45	1.35
12136253--12136755	216	2.3	217	88	5	658	47	4	2	45	1.36
12135744--12136751	515	1.9	520	93	1	1729	47	4	2	45	1.34
12136182--12136298	26	4.3	26	65	26	62	49	4	1	44	1.32
12141080--12141439	41	8.8	41	83	4	381	24	26	25	23	2.00
12141080--12141459	165	2.3	162	82	8	448	23	26	25	24	2.00
12148635--12148672	18	2.1	19	85	5	51	23	2	10	63	1.39
12149743--12149767	11	2.3	11	100	0	50	48	16	8	28	1.74
12154884--12155126	51	4.8	51	88	1	344	33	13	22	30	1.93
12160916--12160970	27	2.0	27	100	0	110	30	18	29	21	1.97
12163187--12163244	23	2.5	23	82	0	80	24	29	5	41	1.76
12167602--12167641	15	2.7	15	88	0	53	35	5	22	37	1.76
12168138--12168433	148	2.0	148	97	0	556	36	16	23	23	1.94
12171596--12171646	26	1.9	27	84	11	70	0	25	15	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12198648--12198697	24	2.1	24	96	0	91	22	24	26	28	1.99
12200096--12200121	7	3.7	7	100	0	52	61	0	26	11	1.30
12208608--12208640	12	2.8	12	86	4	50	57	0	36	6	1.23
12229819--12229848	6	5.0	6	91	0	51	63	0	36	0	0.95
12229814--12229874	18	3.2	18	81	9	68	65	0	34	0	0.93
12243202--12243234	12	2.6	13	95	4	59	15	0	12	72	1.12
12243257--12243326	34	2.1	34	86	5	97	24	20	7	48	1.74
12243279--12243326	17	2.8	17	75	6	53	22	14	10	52	1.72
12262332--12262364	13	2.3	15	90	10	52	3	33	0	63	1.10
12272493--12272525	9	3.8	9	88	4	50	21	0	3	75	0.93
12273171--12273221	26	2.0	26	84	7	68	31	3	1	62	1.24
12275891--12275923	15	2.2	15	89	10	50	33	24	3	39	1.71
12278550--12278760	56	3.8	56	82	5	257	34	24	16	24	1.95
12278557--12278760	112	1.8	112	90	0	327	34	23	17	24	1.95
12284228--12284285	31	1.9	31	92	3	100	25	18	10	44	1.82
12284231--12284307	31	2.5	31	85	4	93	24	16	11	46	1.81
12284529--12284699	58	2.9	59	78	6	195	50	12	15	21	1.77
12284604--12284699	31	3.2	31	75	11	92	50	12	14	22	1.77
12285327--12285758	212	2.0	212	99	0	846	23	5	18	53	1.66
12287582--12287652	17	4.2	17	77	0	79	39	4	4	52	1.41
12287576--12287642	34	2.0	34	90	0	107	32	4	7	55	1.48
12287649--12287686	19	2.1	18	90	5	58	57	15	5	21	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12287726--12287777	26	2.0	26	92	0	86	46	36	13	3	1.62
12288342--12288419	3	25.3	3	84	5	102	62	2	1	33	1.17
12289314--12289668	30	12.0	29	78	8	256	37	22	2	37	1.69
12289310--12289634	60	5.5	58	81	8	284	37	21	2	38	1.66
12289533--12289713	57	3.2	58	85	3	208	35	23	5	35	1.78
12289442--12289722	29	9.7	28	77	11	164	35	24	4	35	1.75
12289677--12289755	29	2.7	29	84	3	88	31	30	7	30	1.85
12289706--12289762	29	2.0	29	85	0	78	28	33	10	28	1.90
12298753--12299097	161	2.1	161	88	1	503	36	20	20	22	1.95
12298914--12299451	209	2.6	209	87	0	729	35	19	23	22	1.96
12298629--12299306	370	1.8	370	90	0	1086	36	19	21	22	1.95
12299789--12299855	34	2.0	34	84	0	89	32	4	7	55	1.48
12299939--12299989	26	2.0	26	88	0	75	45	33	11	9	1.74
12301496--12301724	29	7.8	29	78	8	221	37	24	2	36	1.69
12301715--12301826	29	3.9	29	68	13	77	30	28	9	31	1.89
12301687--12301811	58	2.2	58	79	2	135	34	26	8	31	1.85
12301775--12301859	29	2.9	29	79	5	73	28	30	10	30	1.90
12307084--12307170	36	2.4	36	71	17	90	32	10	24	33	1.89
12307579--12307818	23	10.5	23	80	7	256	35	4	15	45	1.65
12308530--12308568	21	1.9	19	90	10	60	64	0	0	35	0.94
12308527--12308568	19	2.3	18	87	4	57	64	0	0	35	0.94
12308661--12308814	10	16.0	10	67	17	60	34	1	3	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12308661--12308856	18	11.2	18	68	14	97	34	2	3	60	1.24
12308671--12308711	15	2.6	15	92	7	64	36	0	0	63	0.95
12312982--12313149	76	2.2	76	82	2	201	16	22	29	32	1.95
12312986--12313227	38	6.2	40	75	9	146	16	21	27	33	1.95
12317527--12317578	18	2.9	18	70	0	50	26	28	13	30	1.94
12318086--12318128	21	2.0	21	90	0	68	25	25	20	27	1.99
12319012--12319039	14	2.0	14	100	0	56	71	7	7	14	1.29
12333674--12333784	47	2.4	47	84	3	143	18	10	23	46	1.80
12337495--12337572	19	4.1	19	82	17	83	57	7	0	34	1.27
12337572--12337617	11	4.1	11	83	5	56	63	2	0	34	1.07
12337578--12337627	12	4.3	12	82	5	59	70	2	2	26	1.09
12337578--12337627	23	2.2	23	82	7	57	70	2	2	26	1.09
12338498--12338549	27	2.0	27	88	3	79	42	0	0	57	0.98
12353292--12353335	21	2.1	21	91	0	70	0	27	13	59	1.35
12360564--12360617	24	2.3	23	78	21	58	18	24	5	51	1.67
12361306--12361396	21	4.2	21	78	9	87	47	19	0	32	1.50
12361296--12361380	43	2.0	44	86	6	120	47	20	0	32	1.50
12361296--12361396	43	2.3	44	80	11	111	46	20	0	32	1.51
12361967--12362225	139	1.9	139	82	4	335	25	11	11	50	1.73
12363648--12363730	36	2.2	39	81	10	102	21	4	18	55	1.61
12363595--12363820	92	2.5	91	82	7	253	22	3	17	57	1.55
12363737--12363820	38	2.2	39	85	8	111	26	1	13	59	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12363788--12363850	29	2.3	27	82	12	76	30	4	11	53	1.56
12363747--12363831	38	2.2	39	83	10	104	28	1	12	57	1.43
12367124--12367180	30	1.9	30	85	7	80	21	5	15	57	1.57
12367460--12367491	16	2.1	16	88	11	50	21	21	6	50	1.71
12372078--12372102	1	25.0	1	100	0	50	0	0	100	0	0.00
12378274--12378308	16	2.2	16	100	0	70	60	11	22	5	1.52
12379418--12379582	81	2.0	81	91	0	267	43	14	16	25	1.86
12389441--12389535	40	2.4	40	81	0	127	43	18	20	17	1.89
12391294--12391390	42	2.3	41	79	10	99	40	13	27	18	1.88
12396653--12396879	43	5.3	43	82	0	258	30	16	25	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143