genome.fa.s11.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  51  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16457931--16458186	99	2.6	98	84	4	318	36	16	30	16	1.91
16457995--16458309	148	2.1	148	82	3	384	37	15	30	16	1.90
16457934--16458456	99	5.3	98	77	8	309	36	14	30	18	1.91
16458502--16458557	21	2.7	20	76	17	69	33	14	30	21	1.93
16458688--16459037	42	8.6	42	87	6	506	28	28	17	25	1.97
16458697--16459037	81	4.2	81	89	4	515	28	28	17	25	1.97
16458688--16459037	123	2.9	123	88	5	512	28	28	17	25	1.97
16458690--16458995	165	1.9	164	95	2	551	28	28	17	25	1.97
16475272--16475363	24	3.7	24	69	13	78	17	26	17	39	1.91
16475272--16475617	101	3.4	100	84	2	442	18	25	17	38	1.92
16475283--16475615	24	13.2	24	64	12	105	18	25	17	38	1.93
16475283--16475603	151	2.1	152	88	2	484	18	25	18	38	1.93
16475283--16475623	50	6.8	49	83	7	384	18	25	17	38	1.93
16476526--16476573	3	16.0	3	100	0	96	33	0	0	66	0.92
16481343--16481389	24	2.0	24	87	4	69	25	4	0	70	1.05
16486306--16486341	18	2.0	18	100	0	72	38	16	27	16	1.90
16493129--16493166	20	1.9	20	88	0	58	50	26	2	21	1.62
16502980--16503063	23	3.4	23	67	20	62	50	2	5	41	1.40
16508578--16508627	24	2.1	24	92	0	82	28	12	6	54	1.60
16508586--16508640	24	2.3	24	83	0	65	30	14	9	45	1.76
16514460--16514485	10	2.6	10	100	0	52	61	0	19	19	1.35
16516563--16516638	27	2.7	28	76	13	75	36	14	21	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16517861--16517934	21	3.5	21	78	7	69	28	27	16	28	1.97
16518599--16518725	23	5.7	22	72	13	91	7	4	21	66	1.34
16518617--16518711	12	8.3	12	70	11	56	6	4	21	68	1.29
16518599--16518712	43	2.5	45	79	11	126	6	5	21	67	1.33
16518661--16518725	20	3.0	20	77	16	67	6	4	23	66	1.33
16518599--16518725	44	2.8	44	80	10	141	7	4	21	66	1.34
16518672--16518733	20	2.9	21	76	11	54	8	4	22	64	1.40
16518838--16518891	27	2.0	27	85	7	74	22	0	7	70	1.12
16519443--16519679	52	4.6	52	89	2	359	35	24	15	24	1.94
16519523--16519604	26	3.2	26	61	19	62	37	21	12	28	1.90
16526973--16527015	21	2.0	21	86	0	59	32	25	16	25	1.96
16527573--16527623	25	2.0	25	96	0	93	35	15	15	33	1.90
16527741--16528064	52	6.2	52	87	0	450	33	22	16	26	1.95
16539722--16540101	52	7.4	52	85	1	424	37	20	13	27	1.91
16542106--16542151	17	2.7	18	83	12	53	52	17	13	17	1.75
16556817--16557034	86	2.6	82	81	7	253	20	17	28	33	1.95
16556871--16557123	86	2.8	86	86	8	301	20	18	26	34	1.96
16556951--16557130	98	1.8	98	92	0	306	21	18	26	33	1.97
16569274--16569307	17	2.1	17	88	5	52	41	8	5	44	1.60
16573432--16573477	19	2.4	19	75	24	51	36	4	15	43	1.66
16575188--16575241	26	2.1	26	89	0	81	29	25	18	25	1.98
16575345--16575443	37	2.7	36	79	6	110	23	15	30	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16607749--16607849	36	2.8	36	93	0	175	37	19	24	17	1.94
16608722--16608935	41	5.1	42	78	9	181	37	10	24	26	1.88
16608728--16608935	83	2.5	83	80	6	208	37	11	25	26	1.89
16621100--16621153	18	2.8	18	88	8	72	11	27	11	50	1.72
16621100--16621143	21	2.1	21	95	0	79	9	29	9	52	1.64
16622048--16622097	25	2.0	26	92	4	84	60	4	2	34	1.27
16626324--16626366	17	2.5	17	88	0	59	55	16	11	16	1.68
16626763--16626810	15	2.9	16	81	9	53	0	33	6	60	1.22
16633047--16633091	18	2.5	19	78	10	58	17	22	24	35	1.95
16633565--16633632	34	2.0	34	100	0	136	29	23	20	26	1.99
16638497--16638579	40	2.1	40	100	0	166	22	24	10	42	1.85
16652194--16652224	14	2.2	14	94	0	53	35	19	12	32	1.90
16652227--16652261	15	2.3	15	85	0	52	42	20	8	28	1.81
16652808--16652855	17	2.7	17	74	6	51	37	16	14	31	1.89
16653336--16653389	21	2.6	21	76	5	56	33	22	11	33	1.89
16661162--16661346	41	4.4	42	78	6	162	24	26	11	37	1.89
16664402--16664555	63	2.4	63	84	0	200	29	9	29	31	1.88
16666260--16666545	122	2.4	121	85	4	371	39	16	19	24	1.92
16666465--16666630	85	2.0	84	86	1	233	37	16	22	23	1.93
16668583--16668964	30	12.9	30	72	13	229	34	26	2	36	1.71
16680639--16680687	3	16.3	3	100	0	98	67	0	0	32	0.91
16681390--16681429	10	4.0	10	83	0	53	2	35	0	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16682589--16682646	31	2.0	30	86	10	84	51	5	10	32	1.58
16684468--16684559	45	2.0	45	100	0	184	23	15	9	51	1.73
16691751--16691799	26	1.9	25	87	4	71	16	0	10	73	1.09
16692164--16692203	13	3.1	13	85	0	53	42	2	17	37	1.63
16698796--16698835	21	2.0	21	90	5	64	57	0	42	0	0.98
16703461--16703517	26	2.2	26	80	0	69	21	15	21	42	1.89
16704825--16739647	215	162.3	213	74	10	23529	27	18	14	38	1.91
16704825--16739647	214	163.3	213	75	9	25207	27	18	14	38	1.91
16719157--16721511	427	5.5	429	83	5	2914	27	18	15	38	1.91
16732167--16732243	34	2.2	34	88	2	109	25	14	15	44	1.84
16734506--16739647	647	8.0	647	83	3	5994	27	18	15	38	1.91
16748350--16748398	25	1.9	26	91	4	82	38	22	16	22	1.92
16748355--16748441	24	3.6	24	82	4	104	31	22	20	25	1.98
16764144--16764362	51	4.3	50	80	10	241	36	12	13	36	1.83
16764144--16764368	100	2.2	102	84	7	289	37	12	13	36	1.82
16764654--16764696	23	2.0	21	82	13	52	41	18	20	18	1.90
16764843--16764938	36	2.7	36	93	0	156	40	23	14	20	1.90
16765439--16765487	26	1.9	26	91	4	82	67	0	14	18	1.23
16765449--16765504	25	2.2	25	84	9	69	62	1	14	21	1.40
16766147--16766179	17	1.9	17	88	11	50	27	0	6	66	1.15
16766603--16766724	48	2.5	48	87	0	181	27	7	15	50	1.71
16773692--16773738	25	1.9	24	87	12	69	53	12	14	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16775100--16775132	17	1.9	17	93	0	57	63	3	27	6	1.32
16775171--16775212	21	2.0	21	85	0	57	66	0	23	9	1.21
16776320--16776442	47	2.5	49	83	7	153	41	11	12	34	1.78
16776301--16776475	50	3.6	50	78	10	173	37	13	12	37	1.81
16778817--16778871	21	2.6	21	82	0	74	34	27	12	25	1.92
16779554--16779609	28	2.0	28	89	0	85	23	28	17	30	1.97
16783696--16783742	21	2.2	21	84	0	58	34	27	12	25	1.92
16789715--16789850	31	4.5	31	74	15	133	25	16	11	47	1.80
16790087--16790173	42	2.0	43	88	4	131	41	16	20	21	1.90
16790131--16790227	31	3.2	30	71	19	85	48	13	15	22	1.80
16790151--16790206	29	1.9	29	81	0	67	53	10	14	21	1.70
16791360--16791415	18	2.9	19	76	7	60	12	1	14	71	1.23
16794161--16794195	18	1.9	19	88	11	56	68	0	8	22	1.16
16800709--16800786	38	2.1	38	97	0	147	39	14	10	35	1.80
16819959--16819999	15	2.8	15	85	3	57	29	4	21	43	1.73
16832209--16832250	17	2.4	18	84	4	59	69	2	9	19	1.28
16834076--16834244	50	3.4	49	70	16	123	26	23	17	33	1.96
16838966--16839115	23	6.4	23	85	4	185	43	22	22	12	1.86
16838941--16839115	48	3.7	43	76	14	152	42	22	23	12	1.87
16838918--16839094	71	2.5	69	82	9	189	42	22	22	12	1.86
16849312--16849419	51	2.1	52	91	3	175	37	3	6	51	1.45
16852153--16852259	35	3.0	35	91	2	169	27	28	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16858507--16858559	25	2.1	25	89	0	79	35	7	7	49	1.60
16859849--16859918	26	2.7	26	100	0	140	41	10	8	40	1.69
16868818--16868872	27	2.0	28	86	10	78	1	34	3	60	1.25
16878901--16878990	28	3.2	28	64	22	71	23	18	25	32	1.97
16878890--16879111	56	4.0	56	88	2	333	24	16	25	33	1.96
16881268--16881304	19	1.9	19	89	10	58	75	0	13	10	1.04
16884411--16884949	51	10.7	51	69	11	225	35	17	19	26	1.95
16884534--16884920	101	3.8	100	79	6	370	36	18	18	26	1.94
16884400--16884920	152	3.4	152	77	8	452	34	18	19	27	1.95
16884695--16884950	100	2.5	99	84	2	262	38	18	16	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143