genome.fa.s11.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  141  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42083071--42083153	33	2.5	33	84	7	98	31	16	28	22	1.96
42083090--42083231	33	4.4	33	75	8	112	27	21	30	21	1.98
42086653--42086754	52	2.0	51	82	5	125	30	4	3	60	1.36
42086930--42086968	11	3.5	11	89	0	60	69	10	2	17	1.28
42086930--42086974	22	2.1	22	87	4	65	71	8	2	17	1.23
42087586--42087669	29	2.7	31	80	9	109	51	8	3	36	1.50
42087586--42087669	31	2.8	30	78	14	100	51	8	3	36	1.50
42088242--42088297	28	2.0	28	85	0	76	44	1	3	50	1.29
42088893--42088929	15	2.3	17	86	9	51	59	0	2	37	1.12
42092268--42092324	24	2.4	24	84	0	69	40	14	12	33	1.83
42092435--42092504	20	3.5	20	73	7	70	35	14	17	32	1.90
42092307--42092650	180	1.9	184	84	8	470	26	18	16	37	1.93
42094903--42094948	22	2.0	24	84	12	62	30	0	8	60	1.26
42096215--42096246	3	10.7	3	100	0	64	34	34	31	0	1.58
42116281--42116305	3	8.3	3	100	0	50	32	0	32	36	1.58
42117196--42117240	19	2.4	18	85	14	56	31	2	8	57	1.41
42117290--42117341	19	2.5	21	81	12	63	51	3	0	44	1.19
42117314--42117348	16	2.4	14	86	13	52	51	0	0	48	1.00
42123435--42123531	51	2.0	48	82	13	119	34	18	8	39	1.81
42123708--42123740	8	4.1	8	96	0	57	27	0	12	60	1.32
42123918--42123954	19	1.9	19	88	0	56	32	16	5	45	1.70
42125677--42125738	32	1.9	32	100	0	124	53	3	6	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42126782--42126841	31	1.9	32	83	10	79	33	18	5	43	1.72
42126814--42126925	59	1.9	59	81	5	136	26	13	13	46	1.80
42127096--42127170	31	2.4	31	88	4	107	48	13	14	24	1.80
42127524--42127567	18	2.4	19	81	14	56	31	11	9	47	1.71
42127653--42127703	16	2.9	18	77	14	52	33	25	5	35	1.80
42134238--42134290	24	2.2	24	86	3	70	60	15	5	18	1.54
42141076--42143509	911	2.7	903	83	5	3001	35	14	13	36	1.85
42143498--42143522	13	1.9	13	100	0	50	44	24	0	32	1.54
42144982--42145065	35	2.3	35	76	19	82	54	2	4	38	1.34
42160785--42160835	24	2.1	24	100	0	102	62	3	3	29	1.31
42163312--42163382	35	2.0	35	97	0	133	36	22	14	26	1.92
42167583--42167643	25	2.6	23	77	12	61	60	9	3	26	1.43
42170261--42170304	17	2.6	17	79	10	54	61	0	4	34	1.16
42170526--42170658	66	2.0	66	100	0	266	35	12	12	40	1.79
42172038--42172083	7	6.6	7	94	0	83	13	28	2	56	1.48
42172120--42172145	13	2.0	13	100	0	52	23	30	23	23	1.99
42176443--42176477	13	2.5	14	90	9	54	68	0	0	31	0.90
42177993--42178531	279	1.9	275	80	6	611	29	15	16	39	1.89
42180820--42181189	196	1.8	200	85	8	529	29	10	14	46	1.77
42183966--42184541	192	3.0	192	97	0	1091	29	15	21	33	1.94
42189813--42190137	94	3.4	93	81	9	379	40	18	15	25	1.90
42189893--42190418	281	1.9	266	83	6	676	37	21	15	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42190160--42190421	100	2.5	103	85	3	359	37	21	14	26	1.92
42190607--42190663	22	2.8	19	76	19	53	73	10	1	14	1.17
42190606--42190658	23	2.3	22	81	12	54	73	7	1	16	1.15
42191574--42191630	29	1.9	30	86	10	82	54	14	10	21	1.69
42191594--42191698	28	3.7	28	76	12	97	58	9	6	25	1.54
42192705--42192741	3	12.3	3	100	0	74	32	32	0	35	1.58
42193474--42193505	17	2.0	17	88	11	50	62	0	0	37	0.95
42193465--42193533	23	3.0	23	80	8	77	57	0	1	40	1.07
42193463--42193529	22	3.0	22	84	2	80	56	0	1	41	1.08
42205289--42205323	17	2.1	17	89	5	54	57	0	0	42	0.99
42210905--42210934	2	15.0	2	100	0	60	50	0	0	50	1.00
42211832--42211876	19	2.3	19	84	3	54	28	8	24	37	1.86
42212314--42212389	40	1.9	39	94	2	134	27	9	28	34	1.88
42213154--42213195	17	2.5	17	84	7	50	45	7	4	42	1.52
42214777--42214856	30	2.7	29	77	12	81	38	3	7	50	1.49
42218940--42218976	19	2.0	19	89	5	58	56	8	2	32	1.43
42225093--42225127	19	1.9	17	88	11	52	34	0	28	37	1.58
42233712--42233783	31	2.3	31	83	4	92	44	9	11	34	1.73
42239482--42240125	241	2.7	236	84	5	821	37	17	16	27	1.92
42241872--42241940	28	2.5	26	75	11	66	59	4	2	33	1.32
42241919--42241961	23	1.9	23	85	4	61	69	2	2	25	1.12
42243182--42243227	23	2.0	23	95	0	83	50	21	2	26	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42255730--42255764	17	2.1	18	89	10	56	2	5	25	65	1.28
42265643--42265670	14	2.0	14	100	0	56	35	21	7	35	1.81
42266619--42266678	31	1.9	31	83	6	77	43	16	10	30	1.81
42266697--42266784	28	3.1	28	65	12	81	55	11	10	22	1.65
42266676--42266784	56	1.9	56	100	0	218	52	11	11	25	1.69
42272921--42273012	31	3.0	31	85	3	125	40	9	16	33	1.81
42281318--42281556	42	5.7	42	70	5	169	30	20	21	27	1.98
42281331--42281556	84	2.7	84	78	2	231	30	20	22	26	1.98
42299985--42300035	16	3.2	16	77	0	57	50	1	31	15	1.55
42303376--42303435	30	2.0	31	93	3	104	46	20	8	25	1.78
42317911--42317944	17	2.0	17	94	0	59	61	11	11	14	1.56
42318541--42318581	4	10.2	4	100	0	82	51	24	0	24	1.49
42318722--42318981	127	2.0	128	87	0	369	25	11	21	41	1.87
42325238--42325288	20	2.6	20	78	9	52	64	3	3	27	1.28
42336785--42336821	9	3.8	10	86	13	51	56	0	0	43	0.99
42359184--42359230	22	2.4	19	79	13	51	38	0	0	61	0.96
42360329--42360356	14	2.0	14	100	0	56	28	28	14	28	1.95
42362053--42362112	31	1.9	31	86	0	84	30	16	11	41	1.84
42366319--42366364	24	2.0	23	84	12	60	17	15	41	26	1.88
42366568--42366671	48	2.2	48	96	0	190	30	20	33	15	1.93
42375509--42376542	197	5.2	197	81	6	1174	29	12	22	34	1.92
42395835--42395884	23	2.1	25	82	14	61	28	0	4	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42395845--42395889	21	2.1	21	84	8	56	26	0	2	71	0.98
42401263--42401292	3	10.0	3	92	0	51	63	33	0	3	1.11
42401502--42401526	12	2.1	12	100	0	50	40	28	16	16	1.89
42401980--42402028	11	4.6	10	80	14	62	20	4	2	73	1.10
42401980--42402028	10	4.5	11	82	10	57	20	4	2	73	1.10
42401980--42402036	12	5.2	11	83	8	64	21	3	3	71	1.15
42408148--42408377	73	3.0	78	72	13	215	26	26	10	36	1.89
42413929--42413991	32	2.0	32	87	0	90	61	7	1	28	1.33
42423246--42423272	3	9.0	3	100	0	54	66	33	0	0	0.92
42424811--42424857	24	1.9	25	91	4	78	57	12	2	27	1.47
42427284--42427337	28	1.9	28	85	7	74	42	3	7	46	1.49
42432334--42432394	26	2.3	28	78	13	76	40	1	0	57	1.08
42433421--42433482	31	2.0	31	83	0	79	45	14	11	29	1.80
42438140--42438190	24	2.1	24	96	0	93	21	7	7	62	1.48
42441466--42441544	31	2.5	31	89	4	122	53	1	1	44	1.16
42443004--42443054	18	2.8	18	87	0	66	17	43	27	11	1.84
42452823--42452925	54	1.9	54	90	4	163	51	11	6	30	1.64
42453567--42453610	14	2.8	16	80	16	56	47	0	0	52	1.00
42456989--42457927	176	5.4	175	79	7	855	42	17	11	28	1.84
42456989--42457852	351	2.5	344	79	6	930	42	17	11	29	1.84
42461684--42461716	13	2.4	14	80	10	50	51	0	6	42	1.26
42462874--42462913	19	2.2	19	86	4	55	60	2	2	35	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42463208--42463250	22	1.9	23	90	4	70	46	9	4	39	1.57
42466621--42466707	40	2.1	44	83	12	112	48	3	1	47	1.26
42466621--42466672	20	2.6	20	75	6	61	53	1	0	44	1.11
42466621--42466707	44	2.1	40	81	12	95	48	3	1	47	1.26
42466773--42466821	25	1.9	26	84	12	66	36	8	2	53	1.43
42473383--42473439	28	2.0	27	83	12	71	49	8	7	35	1.61
42488317--42488470	83	1.9	83	92	0	263	26	14	24	35	1.93
42488833--42488865	17	2.0	17	88	5	50	51	3	0	45	1.16
42506614--42506759	63	2.3	63	86	0	220	39	13	7	40	1.72
42506869--42506915	24	2.0	24	87	4	69	27	10	12	48	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143