genome.fa.s11.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  41  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12800059--12800465	199	2.0	199	96	1	753	32	8	16	42	1.77
12800445--12800472	13	2.2	13	100	0	56	14	0	0	85	0.59
12803189--12803216	11	2.5	11	100	0	56	28	28	7	35	1.84
12811770--12811856	36	2.4	36	86	0	120	28	8	26	36	1.85
12813956--12814030	31	2.6	29	80	14	82	26	1	18	53	1.53
12818475--12818532	23	2.7	23	84	7	68	63	10	0	25	1.26
12818503--12818547	21	2.2	21	88	11	67	64	6	2	26	1.30
12818482--12818554	26	2.6	29	75	16	73	67	8	1	23	1.26
12818570--12818720	30	5.1	29	70	9	108	34	7	19	38	1.80
12819951--12819994	19	2.4	17	82	14	52	77	2	0	20	0.88
12820592--12820698	39	2.7	39	78	9	128	25	20	25	28	1.99
12820572--12820765	79	2.5	79	87	3	266	26	18	24	30	1.98
12820573--12820696	39	3.2	38	73	11	115	25	18	26	29	1.98
12820592--12820741	40	3.8	39	75	8	126	26	20	24	29	1.99
12820806--12820928	50	2.5	50	80	7	133	24	20	18	36	1.95
12832489--12832533	21	2.2	21	92	4	74	66	4	2	26	1.22
12832463--12832540	29	2.8	29	80	16	85	66	6	1	25	1.23
12832557--12832713	30	5.3	30	82	2	165	31	5	24	37	1.79
12836498--12836536	20	2.0	20	89	0	60	71	5	0	23	1.05
12844419--12844457	5	7.8	5	100	0	78	38	0	0	61	0.96
12850764--12850806	16	2.8	15	85	3	59	18	11	0	69	1.17
12863687--12863740	21	2.6	19	83	16	56	3	14	3	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12872627--12872656	14	2.2	14	94	5	53	36	10	23	30	1.87
12873548--12873727	84	2.1	84	80	0	216	19	21	23	35	1.96
12882591--12882647	25	2.2	25	81	9	62	52	1	1	43	1.21
12889324--12889395	15	4.8	15	71	0	63	23	26	22	27	1.99
12889357--12889424	28	2.4	28	85	5	82	26	27	20	25	1.99
12895050--12895086	12	3.1	12	88	0	56	56	29	8	5	1.51
12901197--12901255	18	3.4	18	77	11	52	54	0	38	6	1.27
12945178--12945447	51	5.3	51	90	2	359	31	22	12	33	1.92
12951814--12952203	51	7.6	51	87	0	539	27	22	15	34	1.94
12951814--12952203	153	2.5	153	92	1	620	27	22	15	34	1.94
12954297--12954399	24	4.3	24	84	0	143	29	19	22	29	1.98
12954293--12954399	48	2.2	48	91	0	169	28	19	21	29	1.98
12958781--12958935	24	6.3	24	86	7	195	27	20	21	30	1.98
12958777--12958935	76	2.2	72	86	4	219	27	19	21	32	1.97
12958782--12958926	52	2.9	52	87	6	201	29	20	19	31	1.97
12961103--12961141	7	5.6	7	91	8	62	76	0	23	0	0.78
12962741--12963125	30	13.1	30	70	11	176	35	4	22	37	1.74
12962901--12963054	59	2.6	60	78	11	156	36	3	22	37	1.71
12962789--12963004	114	1.9	114	80	5	258	33	4	25	37	1.75
12962979--12963106	59	2.2	59	80	5	143	40	4	20	34	1.73
12964064--12964108	24	2.0	22	86	8	63	35	2	2	60	1.22
12965331--12965675	162	2.1	160	87	2	485	23	20	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12965491--12965894	207	1.9	208	89	2	623	23	20	17	38	1.93
12965152--12965882	369	2.0	367	88	1	1097	22	20	17	38	1.93
12974318--12974366	12	4.1	12	79	10	55	2	28	2	67	1.13
12986404--12986733	59	5.5	58	78	8	281	34	3	26	36	1.72
12986401--12986695	30	10.0	30	78	8	232	33	3	25	37	1.72
13001840--13001927	37	2.4	37	82	0	95	27	34	20	18	1.96
13007069--13007159	27	3.4	27	98	0	173	39	25	8	26	1.85
13007550--13007597	19	2.6	19	83	3	62	60	2	8	29	1.37
13007808--13007900	15	6.1	16	71	15	72	49	6	21	22	1.72
13007835--13007900	30	2.2	31	89	8	100	51	4	21	22	1.66
13008832--13008861	10	3.0	10	95	0	51	40	0	46	13	1.43
13010935--13011006	17	4.2	16	74	10	54	58	12	15	13	1.64
13011392--13011440	17	2.7	18	78	9	55	6	30	0	63	1.19
13017571--13017611	18	2.3	18	82	0	55	17	19	24	39	1.92
13022437--13022462	7	3.7	7	100	0	52	26	0	30	42	1.56
13027534--13027562	2	14.5	2	100	0	58	51	0	0	48	1.00
13027556--13027612	17	3.3	17	75	4	69	64	1	3	29	1.20
13027533--13027700	90	1.8	92	81	7	209	60	2	6	30	1.35
13027808--13027857	2	25.0	2	91	0	82	50	2	2	46	1.24
13027924--13027989	15	4.3	15	78	1	78	51	6	19	22	1.69
13027924--13027989	30	2.2	31	91	2	107	51	6	19	22	1.69
13032213--13032438	43	5.3	43	81	4	242	30	28	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13036837--13037279	41	10.8	41	91	0	681	16	28	25	29	1.97
13038872--13038911	2	20.0	2	100	0	80	50	0	0	50	1.00
13041622--13041673	21	2.5	21	76	17	54	28	26	15	28	1.96
13046575--13046680	54	2.0	54	98	0	203	33	18	27	20	1.96
13049603--13049641	20	1.9	19	85	10	51	48	0	7	43	1.31
13050991--13051061	35	2.0	35	91	0	115	39	14	16	29	1.88
13063771--13063805	17	2.1	17	100	0	70	37	0	40	22	1.55
13067949--13068116	29	5.8	29	82	4	185	33	2	25	38	1.69
13071753--13071795	22	1.9	23	95	4	79	13	6	13	65	1.46
13072698--13072722	12	2.1	12	100	0	50	60	0	32	8	1.26
13073689--13073752	32	2.0	32	84	6	85	71	1	23	3	1.08
13077921--13077959	17	2.2	17	86	4	51	30	15	15	38	1.88
13078782--13078837	28	1.9	30	82	13	73	58	3	1	35	1.26
13078847--13078875	15	1.9	15	100	0	58	55	0	0	44	0.99
13080780--13080829	23	2.2	23	85	0	64	42	20	20	18	1.90
13083963--13084063	28	3.6	28	77	9	89	45	18	15	19	1.85
13084128--13084205	29	2.7	29	77	0	84	43	23	14	19	1.87
13084395--13084430	15	2.4	15	100	0	72	22	13	16	47	1.82
13090947--13091006	26	2.3	26	82	0	75	26	20	18	35	1.95
13091017--13091207	98	2.0	97	88	1	283	21	16	28	33	1.95
13096101--13096140	16	2.5	17	84	15	59	22	2	0	75	0.93
13100028--13100083	21	2.7	21	82	0	67	37	21	7	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13112163--13112202	17	2.4	16	88	8	62	80	0	17	2	0.83
13114091--13114120	14	2.2	14	94	5	53	36	10	23	30	1.87
13115256--13115321	28	2.4	28	94	5	116	51	9	15	24	1.72
13118608--13118653	20	2.3	19	85	7	56	63	6	10	19	1.48
13124609--13124642	14	2.6	14	90	9	54	35	8	26	29	1.87
13131702--13131746	22	2.1	21	84	8	56	28	0	8	62	1.25
13137757--13137794	1	38.0	1	94	0	67	2	97	0	0	0.18
13138620--13138708	45	2.0	45	88	4	135	24	6	16	51	1.69
13150798--13150864	33	2.0	33	85	5	91	37	7	20	34	1.81
13160848--13160878	16	1.9	16	93	0	53	38	0	0	61	0.96
13163219--13163243	11	2.3	11	100	0	50	20	8	8	64	1.46
13163707--13163861	58	2.6	59	89	4	233	29	20	16	33	1.95
13163837--13163886	25	2.0	25	100	0	100	16	12	20	52	1.75
13163836--13163891	25	2.3	24	91	8	96	21	12	17	48	1.80
13163782--13163948	85	2.0	86	92	3	284	25	17	19	37	1.93
13163862--13164009	61	2.4	61	88	6	219	27	19	17	35	1.94
13167745--13167792	12	3.7	12	77	20	51	47	0	10	41	1.37
13167800--13167852	22	2.4	22	75	6	54	47	3	1	47	1.31
13167924--13168441	82	6.3	82	89	4	708	37	6	3	52	1.44
13167924--13168441	163	3.1	162	89	3	743	37	6	3	52	1.44
13173338--13173588	127	2.0	127	81	4	292	35	13	7	42	1.74
13173806--13173836	14	2.2	14	94	0	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13174456--13175058	327	1.8	327	82	6	779	33	11	10	43	1.76
13179572--13179760	87	2.2	87	92	0	306	43	17	11	26	1.84
13184578--13184690	51	2.3	48	81	7	127	54	6	2	36	1.39
13184645--13184798	78	2.0	78	90	2	247	53	13	3	29	1.58
13184718--13184948	97	2.4	93	86	8	295	54	10	3	31	1.52
13186929--13186969	21	1.9	22	90	5	66	78	0	21	0	0.76
13187129--13187163	18	1.9	18	88	0	52	28	0	11	60	1.32
13187183--13187260	23	3.3	23	74	15	61	24	0	10	65	1.23
13187335--13187377	21	2.1	21	91	4	70	25	0	13	60	1.34
13187919--13187964	14	3.1	15	71	22	51	60	8	0	30	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143