genome.fa.s11.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  94  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29149567--29149848	87	3.3	87	82	2	327	35	15	18	30	1.92
29151536--29151577	15	2.8	16	75	17	54	57	0	4	38	1.20
29156842--29156984	72	2.0	72	90	0	223	27	20	12	38	1.89
29158435--29158505	36	2.0	36	91	2	117	14	14	9	61	1.55
29160178--29160215	3	12.7	3	100	0	76	65	0	0	34	0.93
29164000--29164074	2	37.5	2	94	0	132	49	1	1	48	1.18
29177340--29177494	40	3.6	40	70	23	125	32	15	16	34	1.91
29177283--29177784	92	5.5	92	95	0	887	34	16	16	32	1.91
29177472--29177730	52	5.4	52	64	27	180	34	16	16	32	1.91
29178036--29178096	11	5.1	11	76	18	50	45	0	0	54	1.00
29178039--29178090	26	2.0	26	85	7	70	46	0	0	53	1.00
29178038--29178101	32	2.0	32	84	6	85	48	0	0	51	1.00
29178038--29178098	17	3.7	17	79	14	74	45	0	0	54	1.00
29178056--29178098	11	4.0	11	88	11	63	46	0	0	53	1.00
29183971--29184001	16	1.9	16	93	0	53	48	6	19	25	1.72
29193862--29193917	6	8.8	6	90	7	76	0	62	1	35	1.06
29193862--29193917	13	4.4	12	88	8	76	0	62	1	35	1.06
29195417--29195516	26	3.8	26	80	5	112	31	20	21	28	1.98
29195475--29195543	26	2.7	26	83	0	84	34	23	14	27	1.94
29195423--29195542	52	2.3	52	82	2	143	34	20	17	27	1.95
29199405--29199434	15	1.9	16	93	6	53	40	3	23	33	1.71
29203397--29203426	7	4.4	7	91	8	53	86	0	13	0	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29203397--29203426	13	2.2	14	94	5	53	86	0	13	0	0.57
29203595--29203639	24	1.9	24	90	4	74	48	0	37	13	1.42
29207346--29207423	32	2.4	32	89	0	120	28	2	20	48	1.62
29208370--29208406	19	1.9	19	88	0	56	27	8	18	45	1.77
29209346--29209397	20	2.7	20	79	5	63	67	5	3	23	1.29
29209496--29209547	20	2.7	19	75	13	54	69	1	0	28	0.99
29209481--29209578	39	2.5	38	80	12	103	64	5	1	29	1.22
29209481--29209563	37	2.2	40	83	14	104	66	3	1	28	1.16
29209421--29209563	18	7.8	18	67	16	53	65	3	2	27	1.23
29209495--29209548	19	2.9	18	76	10	56	68	1	0	29	1.00
29209481--29209592	37	3.0	37	77	20	99	64	4	1	29	1.23
29209791--29209876	26	3.4	24	70	25	77	24	3	3	68	1.21
29209799--29209875	26	2.8	28	79	16	90	24	3	3	67	1.25
29209906--29210010	18	5.8	18	68	14	58	35	3	1	59	1.27
29209915--29210017	35	2.8	36	84	10	113	35	3	1	58	1.28
29212585--29212830	120	2.0	120	99	0	483	34	19	16	28	1.94
29213197--29213355	29	5.5	28	75	12	133	36	0	26	36	1.61
29213876--29213924	2	26.0	2	78	12	50	2	53	0	44	1.12
29222127--29222512	59	6.6	59	88	1	506	35	2	29	31	1.72
29222187--29222512	30	11.1	28	70	24	176	35	2	29	32	1.71
29224490--29224566	6	12.8	6	71	14	52	55	3	1	38	1.26
29224491--29224553	17	3.9	16	78	16	67	58	3	1	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29224497--29224559	11	5.9	11	71	14	51	58	3	1	36	1.23
29225036--29225100	24	2.7	24	80	0	76	29	13	6	50	1.66
29226671--29226913	116	2.1	117	97	0	461	26	19	25	28	1.99
29227449--29227508	29	2.1	29	80	0	66	28	6	16	48	1.71
29236529--29236596	31	2.2	30	84	7	93	20	5	22	51	1.68
29250389--29252322	78	24.6	77	84	4	1555	33	23	17	25	1.96
29251989--29252298	42	7.8	40	72	12	169	32	27	15	24	1.95
29251848--29252298	38	11.4	38	68	20	162	31	27	16	25	1.96
29250389--29252325	40	49.4	42	70	14	341	33	23	16	25	1.96
29255796--29255936	31	4.5	30	79	16	135	41	3	0	54	1.23
29255796--29255953	33	4.9	33	79	12	168	41	3	0	54	1.23
29255833--29255887	24	2.4	24	82	11	62	40	3	1	54	1.28
29255796--29255936	64	2.2	61	83	7	167	41	3	0	54	1.23
29256708--29256773	32	2.1	30	86	8	87	45	3	0	51	1.16
29257549--29257583	13	2.7	13	100	0	70	11	8	45	34	1.71
29258544--29258597	21	2.6	21	79	5	65	31	27	11	29	1.91
29259348--29259795	195	2.3	194	83	3	544	25	27	19	27	1.99
29264389--29264426	20	1.9	20	100	0	76	28	13	15	42	1.85
29266778--29266804	1	27.0	1	100	0	54	100	0	0	0	0.00
29271625--29271760	7	19.3	7	69	13	64	25	3	25	45	1.70
29271624--29271690	28	2.4	28	79	0	80	26	2	25	44	1.68
29271631--29271712	14	5.9	14	72	5	76	29	4	23	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29271653--29271711	21	2.8	21	81	0	82	27	5	23	44	1.74
29271625--29271744	49	2.4	49	80	5	136	25	4	25	45	1.71
29271972--29272016	21	2.1	21	87	0	63	26	15	35	22	1.94
29272009--29272100	45	2.0	45	93	0	157	20	18	29	31	1.96
29273877--29273966	47	1.9	47	81	4	110	53	8	5	32	1.55
29274048--29274097	16	3.3	15	73	21	50	32	0	6	62	1.20
29274047--29274093	14	3.1	15	77	19	53	29	0	6	63	1.19
29274809--29274851	21	2.1	21	91	4	70	60	11	0	27	1.31
29275937--29275972	19	1.9	18	88	5	54	63	0	0	36	0.94
29276502--29276549	23	2.1	21	82	17	53	56	0	0	43	0.99
29277177--29277215	16	2.5	15	84	12	51	69	20	2	7	1.26
29277461--29277487	2	13.5	2	100	0	54	48	0	0	51	1.00
29279186--29279244	11	4.8	13	74	18	54	44	5	0	50	1.24
29283491--29283556	22	3.0	22	86	6	89	19	15	33	31	1.93
29296663--29296699	6	6.2	6	96	0	65	83	2	0	13	0.74
29298223--29298301	3	26.3	3	89	0	113	27	0	39	32	1.57
29301284--29301336	24	2.2	24	89	0	79	52	7	1	37	1.41
29301291--29301338	24	2.0	24	95	0	87	47	8	2	41	1.45
29301605--29301796	43	4.5	43	87	0	240	29	25	19	26	1.98
29301605--29301826	43	5.2	43	83	0	228	28	25	18	27	1.98
29308058--29308296	41	5.9	41	84	0	291	17	28	22	30	1.97
29308056--29308289	123	1.9	122	85	0	324	18	29	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29313397--29313457	23	2.8	22	70	20	56	36	0	4	59	1.19
29317251--29317297	7	6.9	7	78	4	51	27	0	25	46	1.53
29317258--29317295	20	1.9	20	88	0	58	23	0	26	50	1.50
29327101--29327149	21	2.3	21	86	6	64	24	14	30	30	1.94
29348794--29348837	22	2.0	22	82	13	54	36	9	6	47	1.62
29348834--29349206	149	2.5	149	86	6	499	44	10	4	41	1.57
29348981--29349092	53	2.1	53	80	3	118	48	12	4	34	1.61
29349073--29349325	129	2.0	129	85	6	352	46	8	3	41	1.52
29349210--29349263	22	2.5	22	76	8	65	48	3	0	48	1.19
29350191--29350547	42	8.5	42	87	1	518	36	22	19	20	1.95
29359153--29359195	4	10.8	4	89	0	50	41	0	34	23	1.55
29359247--29359304	26	2.2	26	100	0	116	37	13	17	31	1.89
29359303--29359537	119	2.0	119	97	0	443	24	18	13	43	1.86
29362172--29362216	23	2.1	20	88	12	63	57	6	4	31	1.44
29363942--29363983	19	2.2	19	86	0	57	50	4	2	42	1.36
29363742--29364257	146	3.5	147	87	4	691	43	9	3	43	1.53
29364658--29364694	3	12.3	3	100	0	74	64	0	0	35	0.94
29366586--29366683	50	2.0	49	91	2	160	43	2	9	44	1.47
29370728--29371236	30	17.0	30	79	9	422	38	2	23	35	1.68
29370728--29371161	119	3.7	118	81	7	454	38	2	23	36	1.66
29371989--29372083	29	3.3	29	96	0	172	9	14	5	70	1.31
29373574--29373982	39	10.5	39	74	3	324	25	18	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29373499--29373981	78	6.2	77	82	2	495	26	18	31	24	1.98
29373499--29373979	156	3.1	155	84	1	595	26	18	30	24	1.98
29386157--29386278	29	4.2	28	74	9	82	31	3	26	38	1.72
29386244--29386528	30	9.6	29	80	5	241	38	3	22	34	1.73
29386147--29386523	59	6.4	59	75	9	270	37	3	23	35	1.72
29386244--29386528	89	3.2	88	78	5	279	38	3	22	34	1.73
29422197--29422228	3	10.3	3	93	6	55	0	34	0	65	0.93
29429757--29429831	27	2.7	27	89	2	87	34	25	17	22	1.96
29429769--29429831	27	2.3	27	94	0	108	36	23	17	22	1.95
29443185--29443245	26	2.3	26	80	0	77	29	19	21	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143