genome.fa.s11.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  107  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32794562--32794799	52	4.6	52	88	1	352	34	22	16	26	1.95
32794562--32794797	103	2.3	103	91	2	366	34	22	16	26	1.95
32796745--32796867	64	1.9	64	93	0	210	17	2	54	26	1.55
32798369--32798538	60	2.9	60	80	11	167	33	4	25	35	1.77
32798343--32798478	29	4.7	29	69	17	86	32	6	27	33	1.83
32798328--32798538	60	3.6	59	75	13	163	32	5	26	35	1.80
32798402--32798715	59	5.3	58	75	15	200	35	3	24	36	1.72
32798404--32798728	30	10.9	29	71	11	180	35	3	24	36	1.73
32798503--32798716	88	2.4	89	78	7	204	35	2	23	37	1.70
32800503--32800541	6	6.7	6	88	5	53	53	7	0	38	1.30
32800503--32800541	17	2.2	18	95	4	71	53	7	0	38	1.30
32800503--32800558	23	2.4	23	87	0	85	55	5	1	37	1.33
32800533--32800575	18	2.4	18	80	3	52	60	9	2	27	1.40
32800904--32801303	209	1.9	209	86	0	575	23	22	17	36	1.95
32801164--32801453	152	1.9	152	90	0	463	24	23	17	34	1.96
32800947--32801700	361	2.1	361	89	1	1125	23	22	17	35	1.95
32801315--32801976	201	3.2	203	84	5	767	23	23	17	35	1.95
32809456--32809501	23	2.0	24	82	4	58	43	10	21	23	1.84
32813172--32813571	30	13.5	29	68	16	121	37	4	22	36	1.75
32813168--32813429	59	4.4	59	78	6	239	37	5	23	33	1.78
32813348--32813601	30	8.5	30	72	10	146	37	3	21	37	1.71
32815367--32815460	17	5.4	17	78	5	89	54	5	3	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32815367--32815460	35	2.7	35	84	0	107	54	5	3	37	1.39
32815400--32815448	18	2.8	18	84	3	64	59	8	0	32	1.27
32815953--32815995	21	2.0	21	82	8	52	30	16	20	32	1.95
32817021--32817070	22	2.2	22	82	7	55	48	0	8	44	1.32
32818833--32818905	31	2.3	31	81	13	78	35	2	2	58	1.26
32825703--32825787	30	2.8	30	78	16	88	42	0	36	21	1.53
32827757--32827781	2	12.5	2	100	0	50	52	0	0	48	1.00
32828232--32828275	17	2.6	17	81	0	52	56	0	2	40	1.11
32828249--32828296	25	2.0	24	87	4	69	62	2	2	33	1.18
32831329--32831358	15	2.0	15	93	0	51	40	3	0	56	1.16
32831707--32831754	25	2.0	25	87	4	71	16	16	0	66	1.25
32840573--32840638	30	2.2	29	79	15	71	53	6	1	39	1.35
32843346--32843461	57	2.0	57	86	0	160	28	18	7	44	1.78
32848594--32848659	34	2.1	30	83	11	78	13	1	24	60	1.42
32854799--32854870	29	2.5	28	82	6	74	31	9	29	29	1.89
32854828--32854993	29	5.7	30	77	14	134	34	1	27	36	1.68
32854894--32855030	30	4.7	29	82	9	147	33	2	25	38	1.68
32854894--32855030	59	2.3	58	85	6	186	33	2	25	38	1.68
32854894--32855026	29	4.5	29	83	4	160	33	2	24	39	1.68
32855818--32855875	6	9.5	6	78	10	64	55	0	5	39	1.22
32855843--32855883	17	2.4	17	95	0	73	53	0	2	43	1.13
32856072--32857404	92	14.5	92	91	2	1771	32	16	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32857205--32857347	40	3.3	41	69	27	123	39	16	11	32	1.84
32857426--32857613	51	3.7	50	72	12	136	13	26	22	37	1.91
32857469--32857613	50	2.9	51	72	9	143	13	26	20	38	1.90
32857418--32857613	101	1.9	101	85	4	270	13	26	21	38	1.90
32858904--32858948	22	2.0	22	83	8	56	2	17	2	77	0.97
32864316--32864376	29	2.1	28	85	8	79	26	6	32	34	1.82
32864327--32864528	30	6.9	29	81	8	146	34	2	27	34	1.72
32864400--32864553	30	5.2	30	87	3	190	37	3	22	37	1.70
32865120--32865177	6	9.5	6	78	10	64	55	0	5	39	1.22
32865145--32865185	17	2.4	17	95	0	73	53	0	2	43	1.13
32867690--32867747	20	2.9	20	80	12	57	55	1	1	41	1.20
32870652--32870690	2	19.5	2	100	0	78	51	0	48	0	1.00
32872611--32872680	31	2.3	31	94	0	122	41	7	14	37	1.73
32881833--32881894	27	2.3	27	83	8	81	41	1	1	54	1.19
32883062--32883110	19	2.6	20	78	12	59	67	0	0	32	0.91
32885187--32885235	24	2.0	24	96	0	89	44	24	14	16	1.84
32889896--32889934	17	2.4	17	91	4	62	35	7	10	46	1.67
32890472--32890513	4	9.8	4	92	7	57	0	30	0	69	0.89
32891351--32891448	49	2.0	50	97	2	189	30	18	24	26	1.98
32892587--32892647	3	20.3	3	100	0	122	32	0	0	67	0.91
32896192--32896413	37	6.0	37	84	2	248	16	17	30	36	1.91
32897131--32897170	21	1.9	21	94	0	71	37	7	20	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32898021--32898077	29	2.0	29	85	0	78	24	36	21	17	1.94
32903559--32903595	4	8.8	4	88	11	56	45	2	2	48	1.30
32907283--32907319	4	8.8	4	88	11	56	45	2	2	48	1.30
32910880--32910971	47	2.0	47	84	0	121	25	17	13	44	1.84
32911633--32911660	14	2.0	14	100	0	56	35	7	35	21	1.81
32911722--32911983	97	2.7	97	93	0	445	38	16	18	26	1.92
32912059--32912099	19	2.2	19	86	8	57	48	9	14	26	1.75
32912313--32912473	28	5.7	29	77	12	88	34	3	27	33	1.75
32912338--32912405	29	2.5	28	81	9	77	32	5	32	29	1.81
32912354--32912705	28	12.2	28	76	10	250	35	3	26	35	1.72
32912369--32912719	58	6.1	57	76	12	281	35	2	27	34	1.72
32912374--32912745	28	12.8	29	77	11	216	35	2	26	35	1.71
32914074--32914118	17	2.6	17	82	3	54	57	4	0	37	1.19
32914488--32915147	208	3.2	208	85	1	811	23	22	17	36	1.95
32915086--32915184	37	2.7	37	82	0	126	25	16	19	39	1.91
32927265--32927655	29	13.6	30	74	13	279	37	3	25	33	1.72
32927425--32927695	30	9.2	29	79	8	180	37	2	25	35	1.68
32928112--32928170	23	2.6	23	78	5	66	30	28	20	20	1.97
32928902--32928926	12	2.1	12	100	0	50	24	8	0	68	1.16
32930636--32930695	17	3.6	17	88	2	86	58	6	0	35	1.24
32931497--32931557	30	2.0	30	87	0	86	16	1	37	44	1.58
32931566--32931611	14	3.1	15	81	15	60	15	0	26	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32932767--32932793	13	2.1	13	100	0	54	44	22	22	11	1.84
32935170--32935200	15	2.0	16	93	6	55	64	0	0	35	0.94
32936718--32936766	23	2.1	23	81	7	55	20	4	26	48	1.67
32936738--32936798	30	2.0	30	87	0	86	16	1	36	45	1.57
32936788--32936859	29	2.6	29	84	4	85	15	0	33	51	1.44
32936806--32936854	14	3.3	15	80	13	57	12	0	28	59	1.34
32937412--32937480	11	6.6	11	79	12	83	46	1	0	52	1.09
32937412--32937480	20	3.3	20	83	15	79	46	1	0	52	1.09
32937413--32937472	31	1.9	31	100	0	120	46	0	0	53	1.00
32938407--32938774	182	2.0	182	94	1	639	28	21	17	31	1.96
32943033--32943069	4	8.8	4	88	11	56	45	2	2	48	1.30
32950143--32950180	18	2.2	18	86	13	53	36	0	2	60	1.11
32950534--32950601	9	8.1	9	70	26	51	48	1	1	48	1.19
32950532--32950603	29	2.5	29	84	11	94	48	1	1	48	1.18
32951226--32951274	23	2.1	23	85	7	64	53	26	0	20	1.46
32952262--32952353	47	2.0	47	86	0	130	43	11	17	27	1.84
32955539--32955575	4	8.8	4	88	11	56	45	2	2	48	1.30
32961259--32961613	181	2.0	181	94	1	622	32	19	20	27	1.97
32962550--32962608	9	7.1	9	69	30	51	50	0	0	49	1.00
32962542--32962608	20	3.3	20	73	24	61	50	0	1	47	1.10
32963161--32963232	28	2.5	28	77	6	74	50	36	0	13	1.43
32963222--32963282	30	2.0	30	90	0	95	44	36	1	18	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32963739--32963790	17	2.9	18	80	11	63	26	1	1	69	1.10
32964278--32964371	47	2.0	47	85	0	125	42	11	18	27	1.85
32964810--32965027	104	2.1	102	96	1	400	34	0	8	55	1.37
32966991--32967168	59	3.0	58	76	11	166	36	3	29	30	1.74
32966995--32967173	58	3.1	58	77	7	184	35	2	30	30	1.72
32968299--32968380	12	6.6	12	71	18	60	41	3	1	53	1.26
32968351--32968380	15	2.0	15	93	0	51	43	3	0	53	1.17
32969020--32969054	16	2.2	16	94	0	61	17	8	17	57	1.64
32971096--32971151	28	2.0	28	89	0	85	46	1	0	51	1.11
32971686--32971802	30	4.0	30	73	8	89	48	32	0	17	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143