genome.fa.s11.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  120  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35973560--35973764	30	7.1	28	75	16	154	34	26	1	37	1.68
35973565--35973738	87	2.0	89	83	6	221	35	25	2	37	1.69
35973560--35973766	87	2.4	86	79	10	215	34	26	1	37	1.68
35973582--35973766	28	6.4	29	74	16	154	33	26	1	38	1.66
35973573--35973805	116	2.0	117	85	5	319	33	24	3	38	1.72
35975153--35975215	27	2.3	27	91	0	108	26	17	23	31	1.97
35976905--35977302	30	13.4	29	67	22	179	35	2	28	33	1.69
35976901--35977333	59	7.3	59	83	9	544	35	2	28	33	1.69
35977052--35977345	29	10.0	29	69	22	134	36	1	27	34	1.67
35976899--35977333	177	2.5	176	88	4	617	35	2	28	33	1.69
35979176--35979307	6	22.0	6	73	14	94	48	0	7	43	1.31
35979208--35979284	11	6.9	11	75	18	70	53	0	9	37	1.33
35979206--35979318	48	2.6	41	82	13	127	53	0	6	39	1.32
35979219--35979318	17	6.2	17	79	13	113	54	1	6	39	1.32
35979219--35979302	31	2.7	31	98	0	159	53	0	7	39	1.28
35979208--35979318	11	9.9	11	73	14	50	54	0	6	38	1.32
35979664--35980292	196	3.2	200	87	2	876	18	23	21	36	1.95
35991411--35991785	59	6.4	59	86	7	505	34	2	29	33	1.71
35991412--35991785	117	3.2	117	88	6	519	34	2	29	33	1.71
35991412--35991785	176	2.1	177	86	6	537	34	2	29	33	1.71
35991448--35991792	29	11.8	28	70	19	197	34	2	29	33	1.72
35993637--35993736	6	17.0	6	72	15	66	46	0	7	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35993679--35993736	17	3.6	17	79	13	77	55	0	5	39	1.22
35993716--35993747	11	2.9	11	95	0	55	59	3	0	37	1.13
35994473--35994549	17	4.5	17	76	1	82	54	3	3	37	1.37
36002445--36002492	16	3.0	16	84	0	60	47	6	20	25	1.73
36002697--36002740	19	2.3	19	92	0	70	59	0	0	40	0.98
36002654--36002737	26	3.1	27	77	13	84	57	1	0	41	1.06
36004638--36004978	41	8.3	41	83	6	331	21	25	28	24	1.99
36004612--36004978	81	4.5	80	80	8	361	21	25	28	24	1.99
36007015--36007054	18	2.2	18	86	0	53	50	2	5	42	1.37
36008841--36008871	15	2.1	15	93	0	53	35	35	12	16	1.87
36010415--36010566	36	4.4	34	71	18	127	48	3	1	46	1.29
36010456--36011166	112	6.4	112	95	1	1221	46	2	4	45	1.39
36010356--36011166	334	2.4	335	91	3	1286	46	2	4	45	1.38
36011047--36011205	12	13.2	12	66	19	73	45	1	3	50	1.25
36010369--36011254	446	2.0	434	85	6	1192	46	2	4	46	1.37
36011291--36011363	33	2.3	33	90	6	116	42	5	6	45	1.54
36016716--36016873	66	2.4	66	84	0	217	44	17	22	14	1.85
36016860--36016897	11	3.5	11	80	20	53	28	23	47	0	1.52
36016859--36016911	21	2.5	21	93	0	88	32	20	47	0	1.51
36017194--36017376	43	4.3	43	90	2	262	25	20	31	23	1.98
36018749--36018784	16	2.2	16	90	0	54	30	0	0	69	0.89
36022006--36022474	49	9.6	49	72	9	330	20	24	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36021942--36022474	98	5.4	98	86	1	683	19	24	17	38	1.93
36022897--36022933	18	2.1	18	94	0	65	64	10	5	18	1.43
36028114--36028186	38	1.9	38	88	0	110	47	10	5	35	1.62
36030146--36030278	28	4.7	28	81	12	146	34	3	25	36	1.74
36030203--36030534	118	2.8	116	78	8	321	36	6	25	31	1.82
36030144--36030456	59	5.4	58	79	8	253	34	7	25	33	1.83
36030203--36030418	119	1.8	118	84	6	294	36	6	26	30	1.83
36030320--36030577	29	8.9	29	69	15	88	37	6	22	33	1.80
36030189--36030577	59	6.6	59	77	8	266	35	6	24	33	1.81
36030497--36030577	28	2.9	28	85	3	99	38	4	22	34	1.76
36031676--36031723	3	15.7	3	82	4	51	39	2	0	58	1.10
36031673--36031716	15	2.9	15	89	0	61	45	2	0	52	1.13
36032444--36032479	17	2.2	16	95	5	63	55	0	0	44	0.99
36036013--36036084	31	2.3	31	85	0	90	40	9	6	43	1.65
36036029--36036092	31	2.1	31	87	0	92	37	12	12	37	1.81
36037218--36037248	16	1.9	16	93	0	53	35	0	6	58	1.24
36037428--36037484	23	2.5	23	88	0	87	28	24	22	24	2.00
36040795--36040831	3	12.3	3	94	0	65	64	0	2	32	1.07
36041878--36041921	20	2.2	19	84	15	54	65	9	0	25	1.21
36041887--36041933	21	2.2	21	85	7	60	63	8	4	23	1.40
36050540--36050570	3	10.3	3	100	0	62	67	0	32	0	0.91
36061562--36061734	78	2.2	78	98	0	337	58	9	12	19	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36064940--36064980	15	2.5	17	76	15	50	53	0	4	41	1.22
36068880--36069079	97	2.0	99	83	7	257	28	16	14	40	1.88
36073837--36073925	33	2.9	31	77	8	92	39	11	10	39	1.75
36079848--36079890	18	2.4	18	88	7	61	53	0	0	46	1.00
36083113--36083211	17	5.9	17	78	2	103	38	3	5	53	1.38
36083111--36083221	34	3.3	34	79	5	127	40	3	4	51	1.40
36083175--36083218	22	2.0	23	90	4	72	43	2	0	54	1.12
36083110--36083221	6	19.7	6	73	14	76	41	3	4	50	1.40
36083891--36083952	9	6.6	9	78	10	61	51	0	3	45	1.17
36085039--36085135	31	3.3	30	83	11	112	38	29	2	29	1.69
36085050--36085338	30	9.8	29	68	16	123	35	26	3	34	1.72
36085113--36085332	57	3.8	57	79	9	196	36	24	3	35	1.73
36085048--36085339	59	4.9	60	76	12	232	35	26	3	34	1.72
36085316--36085381	28	2.3	29	79	10	82	31	30	7	30	1.85
36096538--36096880	68	5.0	68	92	2	526	34	16	20	28	1.95
36096552--36096881	31	9.5	36	68	16	196	34	15	21	28	1.94
36096903--36097051	76	2.0	76	89	0	226	34	13	19	32	1.91
36097596--36097650	24	2.3	24	80	0	65	43	3	3	49	1.37
36097636--36097668	17	1.9	17	100	0	66	36	0	9	54	1.32
36097718--36097788	14	5.3	14	83	16	105	39	28	14	18	1.89
36097718--36097790	27	2.7	27	97	2	139	39	27	13	19	1.89
36099368--36099606	30	8.0	30	89	3	340	37	23	2	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36099368--36099685	60	5.3	60	84	7	343	36	26	2	35	1.69
36099460--36099775	58	5.4	58	84	9	274	35	28	1	34	1.68
36099520--36099768	30	8.6	29	69	18	128	35	28	1	34	1.67
36099579--36099807	58	3.9	59	81	5	173	31	30	3	34	1.75
36106549--36106609	28	2.2	27	80	8	77	40	0	4	54	1.22
36106569--36106639	11	6.1	11	76	15	54	39	2	0	57	1.13
36106571--36106646	6	12.8	6	76	13	77	40	2	0	56	1.13
36106571--36106645	17	4.6	17	86	9	111	40	2	0	57	1.13
36106587--36106645	31	1.9	31	96	0	109	40	3	0	55	1.16
36107313--36107347	3	11.3	3	93	6	61	62	2	0	34	1.10
36108430--36108743	59	5.4	59	90	4	494	33	30	1	33	1.69
36108457--36108721	28	9.2	26	67	22	104	32	30	2	34	1.70
36108472--36108738	30	9.1	28	65	21	95	33	29	2	34	1.70
36110563--36110617	27	2.0	27	89	0	83	40	0	5	54	1.23
36110581--36110674	6	15.8	6	77	14	88	47	0	1	51	1.07
36110581--36110651	17	4.4	16	86	13	94	42	0	1	56	1.08
36110588--36110649	31	2.0	31	90	6	99	41	0	1	56	1.09
36110581--36110674	42	2.3	42	83	5	111	47	0	1	51	1.07
36110860--36110890	16	1.9	16	93	0	53	22	58	6	12	1.58
36111360--36111384	13	1.9	13	100	0	50	56	0	0	44	0.99
36112328--36112563	30	7.8	30	86	2	287	37	24	2	34	1.71
36112328--36112563	60	3.9	60	87	1	321	37	24	2	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36112328--36112555	90	2.5	90	89	3	343	37	23	3	35	1.70
36113756--36113814	17	3.5	17	70	25	61	16	35	3	44	1.65
36114691--36114718	6	4.7	6	100	0	56	85	0	0	14	0.59
36117854--36117967	58	1.9	59	87	5	169	30	23	32	13	1.93
36117914--36118132	41	5.4	41	81	4	237	30	22	29	16	1.96
36119647--36119710	16	3.8	16	81	6	65	46	1	3	48	1.27
36119645--36119759	6	20.3	6	72	15	84	44	1	4	49	1.32
36119646--36119759	17	6.8	17	76	6	83	44	1	4	49	1.32
36119652--36119757	57	2.0	53	80	14	119	44	1	4	49	1.34
36121789--36122248	59	7.8	58	83	6	500	31	27	3	36	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143