genome.fa.s11.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  49  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15571402--15571600	30	6.6	30	88	0	299	33	4	24	38	1.74
15571402--15571600	90	2.2	90	93	0	344	33	4	24	38	1.74
15571693--15571999	161	2.0	155	81	9	356	44	14	15	25	1.85
15571751--15572083	161	2.1	160	79	6	352	47	14	15	22	1.81
15572675--15572712	15	2.5	15	91	0	58	28	7	2	60	1.38
15572679--15572734	24	2.3	24	87	6	78	33	7	3	55	1.45
15573417--15573493	17	4.6	17	76	11	70	48	3	3	44	1.39
15573417--15573477	6	10.2	6	74	13	54	50	1	3	44	1.28
15602696--15602728	16	1.9	18	88	11	52	33	3	9	54	1.47
15606377--15606407	15	2.0	16	93	6	55	51	6	9	32	1.60
15609687--15609722	18	2.0	18	88	0	54	63	5	11	19	1.46
15610386--15610420	6	5.7	6	93	6	61	31	2	48	17	1.61
15610386--15610420	13	2.8	12	91	8	61	31	2	48	17	1.61
15610915--15610960	22	2.1	22	100	0	92	36	26	0	36	1.57
15611278--15611315	9	4.2	9	96	0	58	31	39	0	28	1.57
15611282--15611315	3	11.3	3	93	0	59	32	38	0	29	1.58
15615986--15616028	2	21.5	2	100	0	86	0	48	0	51	1.00
15621315--15621401	43	2.0	43	80	8	97	33	0	3	63	1.11
15621329--15621432	26	4.1	24	75	14	75	32	0	2	63	1.16
15621376--15621428	20	2.8	19	81	10	56	32	1	3	62	1.24
15621958--15622004	22	2.1	22	88	0	67	51	12	14	21	1.76
15629168--15629209	22	1.9	22	81	18	52	52	9	4	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15636037--15636074	3	12.7	3	100	0	76	68	0	31	0	0.90
15651210--15651274	27	2.3	28	80	15	80	32	4	3	60	1.33
15656760--15656819	29	2.1	29	90	0	93	30	8	16	45	1.77
15656872--15656930	29	2.0	29	83	6	75	50	3	1	44	1.28
15657674--15657724	3	17.0	3	83	0	57	70	1	27	0	0.98
15658099--15659707	99	16.4	101	80	14	1571	38	5	32	23	1.78
15658279--15658305	9	3.0	9	100	0	54	77	0	22	0	0.76
15658510--15658682	90	1.9	90	95	0	310	30	7	30	31	1.85
15659617--15659789	84	2.0	83	79	9	179	41	7	30	20	1.80
15670222--15670269	22	2.2	21	85	10	62	20	4	6	68	1.28
15682356--15682385	15	1.9	16	93	6	53	70	0	0	30	0.88
15685675--15685721	2	23.5	2	100	0	94	0	48	0	51	1.00
15696741--15696893	80	1.9	80	87	0	225	24	19	15	41	1.89
15703586--15703638	22	2.4	23	78	15	58	54	1	0	43	1.11
15706437--15706739	30	10.2	30	82	7	323	36	4	21	36	1.75
15706416--15706739	60	5.4	61	85	6	416	36	4	22	36	1.75
15708327--15708392	6	11.7	6	76	12	68	57	1	0	40	1.08
15708327--15708392	11	5.9	11	79	13	64	57	1	0	40	1.08
15708327--15708361	17	2.1	17	100	0	70	51	0	0	48	1.00
15708351--15708402	17	3.1	17	84	13	72	59	3	0	36	1.16
15718953--15719173	30	7.5	30	72	17	101	37	5	23	33	1.78
15718832--15719044	117	1.8	117	86	6	315	39	6	23	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15718876--15719088	59	3.6	58	73	11	186	38	6	23	30	1.80
15718832--15719088	117	2.2	117	82	7	308	38	6	24	30	1.80
15718978--15719173	59	3.4	57	79	11	175	36	6	23	33	1.80
15719071--15719176	30	3.6	30	88	6	162	33	5	24	36	1.79
15720268--15720308	3	13.7	3	100	0	82	68	0	0	31	0.90
15721355--15721483	27	4.8	27	74	7	109	31	22	26	19	1.98
15721350--15721473	20	6.1	20	80	2	140	33	23	25	18	1.97
15721350--15721483	7	19.7	7	74	6	114	32	23	26	18	1.97
15721517--15721573	15	3.8	15	88	6	71	19	3	29	47	1.66
15721539--15721593	19	3.1	19	89	7	80	25	0	30	43	1.55
15721528--15721592	15	4.0	15	80	18	76	21	1	32	44	1.62
15722067--15722101	17	2.1	17	100	0	70	80	0	20	0	0.72
15723356--15723410	16	3.4	16	80	5	65	54	3	1	40	1.28
15723387--15723444	27	2.1	29	83	6	75	56	12	0	31	1.35
15745849--15745896	25	1.9	25	82	0	60	25	6	35	33	1.81
15746538--15746607	26	2.4	29	81	11	83	25	4	10	60	1.47
15746945--15746996	8	6.5	8	75	6	52	71	0	1	26	0.97
15747191--15747231	2	21.0	2	90	5	66	48	0	0	51	1.00
15752364--15752483	23	5.1	23	80	11	145	12	25	21	40	1.89
15752364--15752483	48	2.6	47	84	7	156	12	25	21	40	1.89
15752448--15752522	39	1.9	39	91	0	123	12	22	21	44	1.85
15752482--15752575	23	4.0	23	75	16	86	11	25	19	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15762884--15762993	57	1.9	57	85	7	152	38	24	13	23	1.91
15764975--15765004	12	2.5	12	88	0	51	0	10	0	90	0.47
15770415--15770457	20	2.2	19	87	8	59	55	6	0	37	1.27
15773906--15773947	15	2.8	15	82	10	50	57	4	0	38	1.20
15775515--15775741	113	2.0	113	96	0	418	33	17	21	27	1.96
15775658--15775850	94	2.1	94	89	0	296	27	14	22	34	1.93
15776924--15777063	75	1.9	75	86	4	203	46	9	15	29	1.76
15798992--15799016	12	2.1	12	100	0	50	48	0	0	52	1.00
15800223--15800304	43	1.9	43	82	5	103	19	18	19	42	1.89
15804598--15804717	61	2.0	61	93	0	204	40	15	3	40	1.63
15812667--15812701	15	2.3	15	90	0	52	31	8	0	60	1.27
15813313--15813413	20	4.9	20	79	6	96	46	13	5	33	1.68
15813427--15813467	22	1.9	22	90	5	66	31	12	17	39	1.86
15825742--15825800	25	2.3	25	82	8	66	38	0	1	59	1.08
15829257--15829329	35	2.1	35	82	9	89	16	4	20	58	1.54
15830178--15830229	24	2.1	24	85	3	68	32	0	5	61	1.20
15834439--15834591	74	2.1	74	98	0	297	16	7	27	48	1.73
15835201--15835284	41	2.0	41	95	0	150	40	20	10	28	1.86
15835680--15835725	18	2.5	18	89	3	65	32	15	17	34	1.91
15846583--15846630	24	2.0	24	84	8	62	18	31	2	47	1.60
15855311--15855413	54	1.9	54	87	0	152	31	18	14	35	1.91
15856335--15856413	34	2.3	34	93	0	131	18	8	43	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15856371--15856453	42	2.0	40	83	4	103	13	7	46	32	1.70
15856414--15856477	28	2.2	29	81	10	78	9	6	51	32	1.59
15860435--15860508	35	2.2	33	90	4	112	13	1	47	37	1.52
15860582--15860618	14	2.6	14	86	0	56	10	0	37	51	1.37
15866881--15866910	8	3.8	8	90	0	51	36	10	13	40	1.78
15867739--15867803	7	8.9	7	74	14	51	76	20	1	1	0.94
15867743--15867792	25	2.0	25	84	7	66	80	16	2	2	0.91
15869320--15869350	15	2.0	16	93	6	55	58	0	16	25	1.38
15869762--15869921	82	2.0	82	93	0	275	21	13	15	50	1.77
15875411--15875471	3	20.3	3	77	12	63	63	0	34	1	1.04
15875419--15875459	15	2.7	15	96	0	73	63	0	36	0	0.95
15878444--15878554	56	2.0	56	83	0	141	20	20	30	27	1.98
15886759--15886796	10	3.8	10	86	6	51	0	18	0	81	0.69
15897969--15898047	36	2.2	37	88	2	115	27	29	17	25	1.98
15898035--15898128	38	2.5	38	79	5	102	31	23	14	29	1.95
15909484--15909670	52	3.6	52	89	0	275	26	16	24	33	1.96
15911747--15911807	26	2.4	25	73	13	61	54	6	11	27	1.61
15913499--15913599	21	5.3	21	66	22	87	10	19	32	36	1.87
15913479--15913621	37	3.9	37	92	0	232	12	19	30	37	1.89
15913520--15913620	16	5.7	16	66	21	58	11	17	31	38	1.86
15913479--15913620	74	1.9	74	95	0	257	12	19	30	38	1.89
15925844--15925884	16	2.6	16	96	0	73	4	0	34	60	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15926165--15926213	24	2.0	24	84	7	64	20	24	14	40	1.89
15930543--15930835	52	5.7	52	91	1	428	34	24	15	24	1.94
15930701--15930782	26	3.2	26	61	19	62	32	28	15	23	1.95
15930727--15930808	26	3.2	26	61	19	62	35	24	13	26	1.92
15938444--15938475	16	2.0	16	93	0	55	53	3	18	25	1.59
15942686--15942727	12	3.5	12	78	12	50	0	35	2	61	1.09
15953564--15953608	23	2.0	23	91	4	74	13	20	40	26	1.89
15953566--15953608	11	3.8	11	78	3	50	13	18	39	27	1.89
15955281--15955435	58	2.7	58	85	2	195	35	22	13	28	1.92
15955286--15955370	29	2.9	29	64	19	68	37	22	12	27	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143