genome.fa.s11.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  24  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7157441--7157473	14	2.3	15	89	5	50	45	9	0	45	1.35
7161684--7161720	14	2.4	16	86	8	51	54	5	0	40	1.24
7165684--7165714	16	1.9	16	93	0	53	22	0	0	77	0.77
7168739--7168893	30	5.2	30	69	20	112	32	25	5	35	1.80
7168709--7168928	59	3.7	59	87	2	273	32	27	5	35	1.80
7168750--7168845	29	3.3	29	71	20	83	30	29	5	35	1.79
7175370--7175421	28	2.0	28	85	11	74	48	13	5	32	1.66
7179807--7180943	76	14.7	76	89	3	1720	34	15	17	32	1.91
7180791--7180921	38	3.5	38	75	16	146	35	14	18	31	1.91
7180572--7180888	167	1.9	165	94	2	564	35	14	17	32	1.90
7183145--7183355	29	7.2	29	67	18	105	35	27	3	34	1.73
7183144--7183355	59	3.6	59	81	2	237	34	27	3	33	1.75
7183140--7183392	118	2.2	117	82	4	312	33	27	3	35	1.74
7192104--7192142	19	2.1	19	85	4	53	28	10	7	53	1.62
7207531--7207561	16	1.9	16	93	0	53	48	0	0	51	1.00
7208458--7208620	81	2.0	81	83	2	202	35	15	6	42	1.72
7211775--7211862	41	2.1	42	79	8	101	52	1	2	44	1.21
7216690--7216763	34	2.2	34	95	0	130	16	4	31	48	1.64
7217008--7217083	34	2.2	34	90	0	116	19	3	27	48	1.66
7216532--7217172	320	2.0	320	94	0	1129	25	12	20	41	1.87
7222445--7222484	2	20.0	2	100	0	80	50	0	0	50	1.00
7224956--7225005	20	2.6	19	82	14	59	18	2	4	76	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7231873--7231933	31	2.0	31	90	0	95	42	11	8	37	1.71
7232096--7232125	16	1.9	16	93	6	53	33	0	6	60	1.23
7236840--7236866	13	2.1	13	100	0	54	37	7	0	55	1.28
7237476--7237515	2	20.0	2	94	0	71	47	0	2	50	1.14
7244302--7244370	34	2.0	33	91	5	111	33	4	7	55	1.47
7244302--7244355	17	3.2	17	72	0	54	33	5	9	51	1.57
7244310--7244381	17	4.2	17	76	0	72	37	5	4	52	1.44
7246050--7246157	29	3.7	29	81	7	119	40	30	1	26	1.67
7246047--7246173	29	4.2	30	74	11	100	37	29	3	29	1.73
7249655--7249692	20	2.0	20	89	5	60	50	13	23	13	1.76
7249781--7249911	40	3.3	40	79	4	156	32	14	25	28	1.95
7249901--7249938	20	1.9	20	88	0	58	31	15	26	26	1.96
7253111--7253335	112	2.0	112	86	3	319	28	18	23	29	1.98
7254631--7254694	24	2.6	25	90	2	87	26	17	6	50	1.69
7254638--7254694	24	2.4	24	93	0	96	28	15	5	50	1.65
7258367--7258392	13	2.0	13	100	0	52	23	0	0	76	0.78
7269907--7270112	96	2.2	95	79	9	222	27	12	6	53	1.62
7270227--7270283	27	2.1	27	100	0	114	63	10	0	26	1.27
7270804--7270842	13	2.9	13	88	11	53	69	0	2	28	1.02
7270797--7270837	13	2.8	15	82	17	59	70	0	0	29	0.87
7272622--7272646	6	4.2	6	100	0	50	84	0	0	16	0.63
7273230--7273270	18	2.3	18	91	0	64	46	7	4	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7273285--7273327	18	2.3	18	85	14	61	60	0	2	37	1.10
7273287--7273328	20	2.2	18	87	8	57	61	0	2	35	1.09
7280319--7280371	26	2.1	25	82	10	63	56	9	5	28	1.54
7280469--7280530	21	3.0	21	81	9	65	69	4	9	16	1.33
7285530--7285556	4	6.8	4	100	0	54	48	25	0	25	1.52
7287121--7287166	2	23.0	2	100	0	92	50	0	50	0	1.00
7288047--7288084	2	19.0	2	100	0	76	50	0	0	50	1.00
7289427--7289456	2	15.0	2	100	0	60	50	0	0	50	1.00
7293262--7293291	3	10.3	3	92	7	53	70	0	0	30	0.88
7304070--7304098	3	9.7	3	100	0	58	65	0	0	34	0.93
7305031--7305095	4	16.2	4	100	0	130	49	0	26	24	1.51
7305649--7305678	4	7.5	4	92	0	51	73	0	3	23	0.98
7315999--7316023	2	12.5	2	100	0	50	48	0	0	52	1.00
7319056--7319148	27	3.4	28	77	7	93	47	29	2	21	1.62
7319152--7319190	21	1.9	21	89	5	62	33	5	23	38	1.77
7325751--7326198	195	2.3	195	82	4	530	28	17	26	27	1.97
7330169--7330225	28	2.0	28	96	0	105	29	21	22	26	1.99
7334589--7334631	22	2.0	22	90	0	68	30	20	27	20	1.98
7334591--7334744	21	7.3	21	77	5	114	34	20	31	12	1.91
7334595--7334744	42	3.6	42	77	1	158	33	20	32	13	1.91
7334591--7334744	63	2.5	62	81	6	184	34	20	31	12	1.91
7336022--7336125	45	2.4	45	78	15	103	28	19	3	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7339345--7339596	132	1.9	132	84	1	335	31	23	21	24	1.98
7345170--7345230	26	2.3	25	78	15	61	59	8	3	29	1.43
7347941--7348000	23	2.5	24	81	2	77	58	10	6	25	1.55
7348485--7348546	30	2.1	31	81	6	74	45	12	8	33	1.72
7351900--7351937	19	2.0	19	89	0	58	36	18	5	39	1.73
7358825--7358876	24	2.2	24	82	6	61	48	3	5	42	1.45
7359882--7359952	17	4.2	17	70	3	63	38	2	5	53	1.39
7363438--7363476	19	2.1	18	85	4	51	33	0	0	66	0.92
7375329--7375368	15	2.6	16	81	18	50	15	12	0	72	1.12
7377505--7377540	14	2.7	13	91	4	54	63	0	0	36	0.94
7377509--7377543	16	2.3	15	90	5	52	65	0	0	34	0.93
7379714--7379769	13	4.2	13	75	22	53	46	0	0	53	1.00
7379714--7379750	16	2.3	16	86	13	58	40	0	0	59	0.97
7383608--7383684	17	4.5	17	79	12	86	42	1	5	50	1.32
7383692--7383783	46	2.0	46	93	0	157	33	19	16	30	1.94
7396181--7396786	200	3.0	200	89	0	924	37	20	20	21	1.94
7396494--7397073	291	2.0	290	89	1	876	36	19	22	21	1.95
7397463--7397496	17	2.1	17	88	5	52	47	0	2	50	1.16
7397424--7397506	29	2.9	28	73	8	78	44	2	4	48	1.37
7405540--7405583	21	2.1	21	86	0	61	34	22	11	31	1.90
7407931--7407975	18	2.3	20	85	14	76	37	4	8	48	1.55
7407938--7407977	18	2.2	18	100	0	80	35	5	10	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7410555--7410603	24	2.0	24	85	14	66	57	22	6	14	1.59
7415461--7415599	31	4.5	31	74	12	126	28	15	8	46	1.76
7415482--7415537	29	2.0	28	89	3	85	25	14	5	55	1.60
7415632--7415782	57	2.6	58	81	7	155	48	10	13	27	1.76
7415935--7415972	19	2.0	19	100	0	76	31	26	26	15	1.96
7419787--7419823	18	2.1	18	100	0	74	27	45	10	16	1.80
7424985--7425048	32	2.0	32	100	0	128	40	34	3	21	1.69
7433269--7433314	2	23.0	2	100	0	92	50	0	0	50	1.00
7437087--7437145	10	5.5	11	75	11	52	44	1	3	50	1.28
7437087--7437145	27	2.2	26	85	8	75	44	1	3	50	1.28
7437095--7437145	16	3.1	17	83	8	61	45	1	3	49	1.32
7437087--7437152	27	2.4	27	82	9	73	43	3	3	50	1.33
7437846--7437954	21	5.2	21	73	14	82	49	1	6	42	1.39
7437865--7437943	24	3.4	23	78	15	92	49	1	7	41	1.39
7437846--7437943	45	2.2	44	87	1	133	48	2	7	41	1.42
7437910--7437967	30	1.9	30	86	13	84	50	0	3	46	1.18
7439165--7439452	30	9.8	29	74	11	221	38	22	1	37	1.65
7439165--7439452	59	4.9	61	79	6	249	38	22	1	37	1.65
7439153--7439452	29	10.2	29	76	7	257	37	23	2	37	1.68
7448632--7448929	147	2.0	148	96	0	544	32	17	20	28	1.96
7452133--7453325	92	13.0	92	94	1	2067	33	16	18	31	1.93
7452133--7453325	548	2.2	553	93	2	2071	33	16	18	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7453605--7453664	17	3.6	17	86	10	88	43	0	0	56	0.99
7453605--7453709	23	4.8	23	79	6	103	43	0	1	53	1.18
7453605--7453709	6	19.0	6	73	16	93	43	0	1	53	1.18
7454412--7454502	21	4.5	21	75	9	64	48	2	7	41	1.44
7454432--7454497	18	3.6	18	76	13	71	46	1	7	43	1.41
7454412--7454497	39	2.2	39	87	2	120	47	2	6	43	1.43
7454431--7454514	39	2.2	39	85	8	109	48	2	7	41	1.43
7454470--7454527	30	1.9	30	83	13	75	50	3	3	43	1.36
7455284--7455323	15	2.7	15	84	0	53	25	52	17	5	1.64
7455696--7456112	30	14.1	29	75	10	301	34	23	4	37	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143