genome.fa.s11.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  30  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8841452--8841614	29	5.5	29	77	11	154	43	19	1	35	1.59
8848801--8848845	23	2.0	23	82	8	56	22	11	2	64	1.36
8849954--8849998	23	2.0	23	82	8	56	22	11	2	64	1.36
8850320--8850366	19	2.5	19	86	10	62	25	2	19	53	1.56
8850412--8850574	21	8.3	20	65	22	78	22	3	17	56	1.56
8850413--8850537	37	3.2	37	78	16	144	22	2	17	57	1.51
8850336--8850463	55	2.2	58	79	5	154	21	3	19	54	1.60
8850531--8850580	18	2.9	18	79	5	50	24	6	16	54	1.64
8853698--8853750	22	2.4	22	83	3	61	32	1	18	47	1.60
8853720--8853764	23	2.0	23	95	4	83	26	4	24	44	1.72
8856478--8856536	3	19.7	3	100	0	118	0	32	0	67	0.91
8857435--8857511	29	2.6	29	85	8	93	55	9	5	29	1.53
8858461--8858499	18	2.1	19	85	4	53	53	0	0	46	1.00
8861862--8862236	49	7.7	49	73	4	254	20	25	17	36	1.94
8861878--8862241	98	3.7	98	88	0	514	20	26	16	36	1.93
8863107--8863177	7	10.4	7	70	20	53	1	16	0	81	0.76
8863104--8863163	26	2.3	25	80	8	75	1	18	0	80	0.80
8863113--8863177	12	5.6	12	75	15	57	1	16	0	81	0.77
8863109--8863175	19	3.5	19	80	8	75	1	17	0	80	0.79
8867076--8867135	21	2.9	21	79	0	66	35	13	21	30	1.92
8876200--8876232	12	2.5	14	90	9	52	21	6	0	72	1.05
8880463--8880524	6	9.7	6	80	18	63	12	3	1	82	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8880463--8880526	25	2.8	24	75	24	82	12	4	1	81	0.92
8880468--8880517	10	5.2	9	77	13	55	12	4	0	84	0.76
8880468--8880524	20	2.8	20	85	12	73	12	3	1	82	0.87
8883651--8883705	19	2.8	21	81	8	62	72	0	25	1	0.94
8886674--8886764	7	13.0	7	72	9	51	24	1	28	46	1.60
8886674--8886745	14	5.2	13	79	12	72	25	1	27	45	1.61
8886685--8886745	28	2.2	28	90	0	95	22	1	27	47	1.61
8886707--8886761	14	3.9	14	80	7	58	25	0	25	49	1.51
8886697--8886752	28	2.0	28	93	3	96	26	0	25	48	1.52
8886679--8886764	21	4.1	20	79	8	84	23	1	27	47	1.59
8886983--8887023	21	2.0	21	95	4	75	26	14	39	19	1.90
8891807--8891856	16	3.2	16	76	21	61	32	0	6	62	1.20
8892570--8892612	21	2.1	21	91	4	70	60	13	0	25	1.34
8892687--8892764	23	3.3	22	71	20	59	65	10	0	24	1.23
8892772--8892806	18	1.9	18	94	0	61	60	14	0	25	1.35
8892977--8893026	4	13.8	4	84	16	65	0	22	0	78	0.76
8892962--8893026	7	9.1	7	86	3	76	0	27	0	72	0.85
8892970--8893026	18	3.2	19	85	9	75	0	24	0	75	0.80
8899256--8899459	26	8.1	26	78	7	188	25	27	15	30	1.96
8899256--8899418	52	3.1	52	84	0	209	25	28	15	30	1.96
8899256--8899418	78	2.1	78	84	0	209	25	28	15	30	1.96
8899374--8899490	45	2.6	45	87	0	162	27	27	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8899651--8899867	24	8.9	24	83	3	272	21	25	16	36	1.94
8902163--8902194	11	2.9	11	100	0	64	43	28	0	28	1.55
8903426--8903506	24	3.4	24	91	0	126	35	17	27	19	1.94
8903631--8903752	45	2.7	45	83	1	147	29	15	27	27	1.96
8903716--8903859	26	5.5	26	76	3	155	33	18	24	24	1.97
8903716--8903852	52	2.6	52	84	2	195	33	18	24	23	1.97
8911882--8911935	24	2.3	24	83	3	65	40	14	12	31	1.84
8912700--8912751	21	2.5	20	84	12	61	34	26	13	25	1.93
8917215--8917262	16	2.9	15	80	20	51	8	10	4	77	1.12
8917527--8917569	22	2.0	22	86	9	61	37	25	16	20	1.93
8919011--8919050	19	2.1	19	90	9	64	55	5	10	30	1.54
8937322--8937454	70	1.9	67	84	4	176	31	12	13	42	1.81
8940206--8940288	42	2.1	41	81	18	97	50	3	2	43	1.32
8940619--8940681	29	2.1	32	85	8	87	53	7	0	38	1.30
8944602--8944651	22	2.3	22	82	0	64	16	8	24	52	1.70
8948883--8949026	40	3.6	40	83	4	148	30	20	23	25	1.98
8949990--8950039	21	2.3	22	86	10	68	26	6	32	36	1.81
8951063--8951090	3	9.3	3	100	0	56	0	32	0	67	0.91
8953413--8953470	10	5.8	10	75	17	50	55	5	0	39	1.22
8957755--8957885	43	3.0	43	97	0	244	21	29	16	32	1.95
8981948--8981998	21	2.4	21	86	0	66	25	13	29	31	1.94
8982926--8982980	22	2.5	22	81	0	65	38	18	29	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8989326--8989377	16	3.2	16	86	0	68	28	25	3	42	1.72
8991373--8991487	31	3.7	31	75	14	94	46	6	4	42	1.48
8991401--8991487	31	2.8	32	82	5	99	48	5	4	41	1.48
8993283--8993325	22	2.0	22	81	9	52	46	0	4	48	1.22
9005044--9005093	18	2.8	18	84	0	64	36	12	14	38	1.83
9014649--9014754	33	3.4	33	66	17	98	41	15	6	36	1.73
9014636--9014760	61	2.0	61	100	0	250	39	15	8	37	1.76
9018431--9018473	6	7.0	6	84	12	52	53	2	0	44	1.13
9022112--9022146	16	2.1	17	94	5	63	48	11	5	34	1.63
9022120--9022155	16	2.2	16	90	0	54	50	13	5	30	1.65
9024020--9024148	48	2.7	48	92	0	213	29	16	20	33	1.95
9025229--9025263	15	2.3	15	90	0	52	22	11	28	37	1.89
9036096--9036174	37	2.1	38	80	2	88	32	25	18	22	1.97
9041741--9041819	37	2.1	38	81	6	90	31	24	20	24	1.98
9041973--9041997	6	4.2	6	100	0	50	20	32	0	48	1.50
9048034--9048143	30	3.6	31	75	14	90	26	10	4	58	1.51
9048405--9048611	110	1.9	110	87	4	310	29	12	18	39	1.87
9052604--9052654	6	8.8	6	83	12	63	49	0	0	50	1.00
9052604--9052645	22	2.0	21	90	4	66	45	0	0	54	0.99
9054690--9055183	59	8.5	57	82	7	512	32	28	3	35	1.75
9054690--9055184	58	8.5	59	82	6	553	32	28	3	34	1.75
9054690--9055147	117	3.9	116	84	6	559	33	28	3	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9055099--9055184	30	2.9	29	68	14	77	30	30	8	31	1.86
9057635--9057665	14	2.2	14	94	0	53	16	32	6	45	1.72
9060627--9060864	52	4.6	52	86	3	329	36	24	14	24	1.93
9066953--9067037	28	3.0	28	87	1	116	30	16	28	24	1.96
9068995--9069027	7	4.7	7	92	0	57	15	30	9	45	1.77
9068995--9069032	14	2.7	14	91	0	58	15	31	7	44	1.75
9070800--9070830	16	1.9	16	93	0	53	22	16	0	61	1.34
9084402--9084449	3	16.3	3	95	4	89	66	0	0	33	0.92
9086394--9086611	41	5.2	41	88	3	258	38	10	27	23	1.88
9093355--9093478	43	2.9	44	79	10	125	40	10	23	25	1.86
9093357--9093514	40	3.9	41	82	9	171	41	11	22	24	1.87
9099879--9100254	190	2.0	194	81	4	449	29	19	24	26	1.98
9101669--9101776	41	2.6	41	86	4	137	39	8	26	25	1.84
9110646--9110705	21	3.0	21	87	4	88	36	10	28	25	1.88
9116767--9116802	18	2.0	18	88	0	54	36	2	5	55	1.38
9117382--9117443	27	2.2	29	85	8	83	50	0	1	48	1.10
9118340--9118394	21	2.6	21	100	0	110	9	50	14	25	1.72
9120521--9120552	8	4.0	8	91	0	55	59	0	0	40	0.97
9122148--9122197	21	2.4	21	100	0	100	32	8	50	10	1.65
9122591--9122696	23	5.0	21	82	15	105	43	0	1	53	1.18
9122631--9122692	17	3.9	17	73	26	73	41	0	0	58	0.98
9122629--9122692	29	2.2	29	83	5	85	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9122720--9122807	12	7.2	12	69	22	51	29	2	2	65	1.16
9122756--9122800	18	2.4	18	82	14	56	28	0	2	68	1.01
9122744--9122814	17	4.2	17	82	12	76	29	1	4	64	1.20
9122866--9123539	170	4.0	170	93	0	1093	31	22	15	31	1.95
9124061--9124231	41	4.2	41	81	3	173	24	23	26	25	2.00
9125831--9125864	18	1.9	18	88	5	52	58	2	8	29	1.43
9129743--9129899	66	2.4	66	89	2	235	43	17	24	14	1.86
9129891--9129937	21	2.2	21	88	0	67	34	21	42	2	1.65
9130138--9130166	15	1.9	15	100	0	58	13	3	34	48	1.60
9130235--9130315	42	1.9	43	92	2	137	24	22	33	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143