genome.fa.s11.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  80  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25550608--25550656	19	2.6	18	76	20	55	63	2	6	28	1.30
25550554--25550630	29	2.7	29	76	9	77	67	0	3	28	1.08
25550642--25550688	19	2.5	19	82	6	60	63	2	6	27	1.30
25550873--25550939	10	6.8	10	77	14	68	29	1	2	65	1.16
25550893--25550940	9	5.0	10	85	14	66	35	2	0	62	1.07
25550893--25550940	19	2.5	19	89	0	78	35	2	0	62	1.07
25550986--25551033	20	2.5	19	79	3	60	37	2	0	60	1.09
25557599--25557628	15	1.9	16	93	6	53	26	16	10	46	1.78
25557977--25558022	12	4.4	11	78	18	53	58	0	2	39	1.10
25557992--25558052	11	5.2	11	73	21	52	57	3	1	37	1.25
25567383--25567430	18	2.7	18	86	0	69	33	27	18	20	1.96
25574252--25574351	18	5.6	18	82	4	121	28	26	22	24	1.99
25586000--25586049	19	2.6	19	87	0	73	24	20	22	34	1.97
25588745--25588781	3	12.3	3	88	0	56	5	0	62	32	1.18
25589901--25589951	21	2.5	21	87	3	77	56	0	0	43	0.99
25589956--25590072	10	12.0	10	71	16	59	62	1	5	30	1.27
25589961--25590044	31	2.8	30	74	16	91	61	1	4	32	1.24
25590005--25590047	22	2.0	20	83	16	52	72	2	4	20	1.14
25590250--25590305	10	5.6	10	82	6	69	32	0	1	66	1.03
25590250--25590316	20	3.4	19	77	6	71	32	1	2	62	1.19
25590250--25590331	39	2.1	40	88	2	121	35	1	2	60	1.17
25590261--25590343	19	4.3	18	71	14	60	38	2	2	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25590817--25590862	19	2.3	20	75	14	51	36	2	0	60	1.09
25597694--25597766	18	4.0	18	89	7	112	21	16	9	52	1.72
25597694--25597766	19	3.9	19	89	10	116	21	16	9	52	1.72
25597694--25597766	37	2.0	36	89	7	112	21	16	9	52	1.72
25598088--25598140	25	2.2	24	83	6	63	45	3	1	49	1.31
25598093--25598143	24	2.0	25	81	7	59	47	3	1	47	1.32
25598485--25598518	17	1.9	18	94	5	61	52	0	5	41	1.25
25603203--25603247	19	2.4	19	81	7	56	37	0	4	57	1.19
25609992--25610016	4	6.2	4	100	0	50	24	0	0	76	0.80
25610549--25610754	107	2.0	104	83	6	263	37	11	24	25	1.89
25611314--25611358	19	2.4	19	81	7	56	40	0	2	57	1.11
25618811--25618855	22	2.1	22	92	8	76	35	4	6	53	1.47
25621685--25621734	10	4.6	11	73	12	50	34	0	0	66	0.92
25621667--25621736	17	4.3	18	67	22	64	34	0	0	65	0.93
25625191--25625276	28	3.0	30	75	11	90	36	20	4	38	1.74
25625534--25625640	43	2.5	43	84	7	146	47	21	0	30	1.51
25625534--25625640	22	5.0	22	75	4	101	47	21	0	30	1.51
25634722--25634764	18	2.4	18	80	0	50	2	13	13	69	1.28
25637423--25637497	31	2.4	31	79	0	78	38	12	10	38	1.77
25637497--25637544	2	24.0	2	100	0	96	50	0	0	50	1.00
25638023--25638126	17	5.9	16	72	15	55	69	2	2	25	1.16
25638044--25638145	9	11.1	9	71	15	50	67	4	2	24	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25638023--25638097	19	3.9	19	75	11	57	68	2	2	26	1.17
25638023--25638112	18	4.9	18	73	15	69	70	2	2	25	1.11
25638062--25638129	26	2.6	26	81	4	75	70	4	2	22	1.18
25638214--25638288	18	4.1	18	71	8	62	70	1	2	25	1.08
25642513--25642556	20	2.2	20	91	0	70	40	15	29	13	1.86
25642524--25642600	20	3.8	20	74	3	75	38	16	29	14	1.88
25642535--25642692	80	2.0	80	81	2	183	41	22	24	12	1.88
25643339--25643382	23	2.0	23	86	4	63	36	15	4	43	1.68
25646421--25646484	31	2.1	29	88	5	92	62	10	7	18	1.51
25646699--25646765	16	4.5	14	73	15	55	62	2	2	31	1.25
25646975--25647058	43	2.0	43	100	0	168	53	7	14	25	1.66
25647330--25647362	18	1.9	17	88	11	50	36	0	0	63	0.95
25648919--25649014	45	2.1	45	100	0	192	25	12	18	43	1.85
25655377--25655474	8	11.3	9	69	19	50	64	1	2	32	1.12
25655378--25655421	15	2.9	16	80	10	56	65	0	0	34	0.93
25655431--25655474	18	2.4	18	84	0	61	65	0	2	31	1.05
25655534--25655593	17	3.6	16	78	10	57	48	6	3	41	1.46
25656807--25656934	60	2.2	59	83	6	154	48	3	9	39	1.51
25657103--25657144	17	2.4	17	88	4	57	47	2	28	21	1.63
25661960--25662001	17	2.4	17	88	4	57	47	2	28	21	1.63
25664185--25664356	52	3.2	53	77	14	142	40	1	33	25	1.66
25665685--25665799	27	4.4	25	77	13	90	60	2	2	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25665704--25665800	26	3.9	25	78	17	96	60	2	4	32	1.27
25673231--25673275	19	2.4	19	81	7	56	37	0	4	57	1.19
25674082--25674121	21	1.9	21	94	0	71	12	10	2	75	1.15
25685765--25685791	9	3.0	9	100	0	54	55	0	22	22	1.44
25688574--25688699	27	4.6	27	78	1	117	26	15	20	38	1.92
25688583--25688713	54	2.5	54	82	5	142	24	15	21	38	1.92
25690105--25690138	15	2.2	16	89	5	52	35	2	35	26	1.72
25694573--25694626	26	2.1	26	82	6	65	31	12	0	55	1.38
25698309--25698343	12	3.0	11	88	12	52	51	20	20	8	1.73
25706205--25706757	39	14.5	38	72	9	333	33	20	18	27	1.96
25706213--25706348	72	1.9	72	83	8	179	33	20	18	27	1.96
25706189--25706757	77	7.4	78	75	12	373	33	21	18	27	1.96
25706194--25706757	38	14.7	38	70	16	204	33	21	18	27	1.96
25712593--25712679	27	3.2	27	81	0	93	29	13	19	36	1.91
25713689--25713772	41	2.0	41	82	13	102	71	4	3	20	1.19
25714156--25714206	27	1.9	26	92	4	84	43	5	11	39	1.66
25714176--25714229	23	2.3	24	84	9	67	50	7	7	35	1.59
25714872--25715625	49	15.4	49	76	6	481	19	16	17	46	1.85
25714843--25715624	147	5.3	146	76	8	561	19	16	17	45	1.85
25720115--25720164	21	2.2	23	75	17	59	2	28	8	62	1.35
25720122--25720165	21	2.1	21	91	0	70	2	25	9	63	1.35
25730167--25730292	46	2.7	47	84	4	159	42	21	19	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25730170--25730280	23	4.8	23	79	0	132	41	22	19	16	1.90
25733939--25733971	16	2.0	17	88	5	50	57	6	9	27	1.53
25734112--25734148	16	2.4	16	86	13	51	67	8	5	18	1.36
25734711--25734744	17	2.0	17	88	0	50	8	0	20	70	1.13
25734797--25734849	27	2.0	27	88	0	79	20	20	26	32	1.98
25742846--25742873	10	2.8	10	100	0	56	42	17	0	39	1.50
25743106--25743145	20	2.0	20	85	0	53	37	10	0	52	1.35
25748894--25748950	24	2.4	24	81	0	69	50	12	8	28	1.69
25750206--25750246	21	1.9	22	85	14	59	26	9	7	56	1.58
25750768--25750810	22	2.0	22	86	9	61	37	2	9	51	1.47
25750927--25750975	19	2.8	17	74	14	55	63	0	2	34	1.06
25752976--25753054	41	2.0	40	87	2	113	44	10	20	25	1.82
25755190--25755223	18	1.9	18	88	5	52	67	0	26	5	1.13
25755193--25755256	25	2.4	27	77	12	71	73	0	20	6	1.04
25755218--25755252	18	1.9	18	94	0	61	71	0	20	8	1.11
25758456--25758480	4	6.2	4	100	0	50	0	24	0	76	0.80
25765224--25765270	21	2.4	19	85	7	58	23	6	12	57	1.58
25789612--25789638	2	13.5	2	100	0	54	51	0	0	48	1.00
25793305--25793363	17	3.4	17	71	17	57	59	5	3	32	1.36
25793382--25793507	53	2.4	53	78	5	130	46	1	25	26	1.62
25793406--25793507	53	2.0	53	84	3	136	47	1	26	24	1.63
25796125--25796181	30	1.9	30	88	0	87	14	26	38	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25803974--25804186	39	5.5	39	76	4	178	36	20	18	25	1.95
25803974--25804186	78	2.7	77	81	4	232	36	20	18	25	1.95
25805033--25805167	40	3.4	38	73	12	96	30	28	20	21	1.98
25805065--25805168	37	2.7	38	76	5	93	31	26	19	22	1.97
25805271--25805307	12	3.1	12	92	0	65	21	24	0	54	1.45
25805454--25805499	22	2.1	22	100	0	92	32	17	4	45	1.68
25805458--25805507	22	2.5	20	87	12	68	34	20	4	42	1.70
25807518--25807567	24	2.1	24	84	0	64	26	30	16	28	1.96
25807565--25807659	24	4.0	24	90	0	145	24	28	12	34	1.92
25811428--25811487	26	2.3	26	94	0	102	28	33	21	16	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143