genome.fa.s11.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  81  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25811308--25811645	184	1.8	184	88	1	516	23	23	23	28	1.99
25818207--25818831	309	2.0	309	98	0	1205	34	14	14	36	1.87
25824554--25824580	13	2.1	13	100	0	54	85	14	0	0	0.61
25830078--25830110	15	2.2	15	94	0	57	84	0	15	0	0.61
25830960--25831035	8	9.1	8	78	13	82	80	0	15	3	0.86
25830960--25831035	33	2.3	32	86	11	100	80	0	15	3	0.86
25830960--25831035	26	3.0	25	84	7	91	80	0	15	3	0.86
25831983--25834978	187	16.0	188	78	5	2603	33	15	25	24	1.95
25831983--25834978	376	8.0	373	78	5	2653	33	15	25	24	1.95
25832057--25834978	564	5.2	554	80	4	2527	33	15	25	24	1.95
25834507--25835418	462	2.0	463	82	5	1135	33	15	25	25	1.95
25834694--25835222	275	1.9	276	80	6	617	34	16	25	24	1.95
25834970--25836245	187	6.8	187	79	4	1185	32	15	26	25	1.96
25834970--25836245	376	3.4	369	79	6	1272	32	15	26	25	1.96
25836600--25836645	6	8.2	6	86	13	71	52	0	0	47	1.00
25836603--25836645	15	3.1	15	80	19	65	53	0	0	46	1.00
25836600--25836640	21	2.0	21	100	0	82	51	0	0	48	1.00
25838637--25838667	12	2.6	12	100	0	62	35	9	32	22	1.87
25840290--25840354	19	3.7	19	67	26	61	58	1	1	38	1.17
25840291--25840355	33	2.0	33	96	0	121	58	1	1	38	1.17
25842237--25845303	187	16.4	187	79	3	2833	32	15	25	25	1.96
25842925--25843247	93	3.4	93	69	10	260	32	15	26	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25842238--25845303	376	8.2	374	79	4	2779	32	15	25	25	1.96
25844432--25844749	94	3.4	91	72	11	257	33	15	25	25	1.95
25845186--25845409	94	2.4	94	81	0	268	33	15	26	25	1.95
25844432--25846159	846	2.0	844	80	4	1935	32	15	25	26	1.95
25845283--25850191	563	8.7	561	80	4	4391	32	15	25	25	1.96
25845283--25850191	187	26.2	187	79	4	4243	32	15	25	25	1.96
25848271--25851880	94	38.5	94	63	15	437	33	16	25	24	1.96
25845283--25850191	376	13.1	375	80	3	4532	32	15	25	25	1.96
25849220--25849910	93	7.4	93	67	14	267	32	16	25	25	1.96
25849687--25850283	93	6.4	92	68	13	315	31	17	26	24	1.97
25849327--25850972	844	2.0	841	85	2	2259	33	16	25	24	1.96
25850162--25851923	375	4.7	374	81	5	1937	34	16	25	24	1.96
25850162--25851975	189	9.7	188	81	3	1775	34	16	24	24	1.96
25851945--25853051	187	5.8	185	78	8	996	32	16	25	25	1.96
25851936--25852921	381	2.6	372	79	9	1107	32	16	25	25	1.96
25851949--25853051	568	1.9	563	79	7	1230	32	16	25	25	1.96
25853164--25853620	42	11.3	42	78	9	466	30	28	16	23	1.96
25853151--25853620	81	5.8	81	83	6	473	30	28	17	23	1.97
25853164--25853620	123	3.8	121	83	7	538	30	28	16	23	1.96
25853208--25853620	203	2.0	203	85	3	539	30	29	16	23	1.96
25854181--25854214	17	1.9	17	88	5	50	52	32	2	11	1.53
25857773--25857912	70	2.0	71	81	6	169	42	12	23	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25860088--25860131	19	2.2	20	88	4	63	36	34	6	22	1.81
25865243--25865299	28	2.0	27	81	18	64	40	14	19	26	1.89
25868989--25869038	25	2.0	25	92	0	82	32	20	8	40	1.81
25871288--25871334	2	23.5	2	100	0	94	51	0	0	48	1.00
25871830--25871890	29	2.2	26	82	8	68	24	1	8	65	1.29
25871858--25871904	22	2.1	22	81	14	53	25	6	6	61	1.44
25872007--25872044	20	1.9	19	89	5	58	34	5	5	55	1.45
25872922--25872959	19	2.0	19	89	0	58	36	15	7	39	1.77
25874340--25874433	33	3.0	33	63	23	76	59	8	5	26	1.48
25877079--25877190	51	2.2	49	82	7	127	34	21	12	31	1.91
25877171--25877242	35	2.0	36	91	2	119	33	13	11	41	1.80
25877214--25877371	57	2.8	58	86	3	214	25	21	15	36	1.93
25878286--25878378	39	2.4	38	78	5	105	62	4	6	26	1.38
25879447--25879502	18	3.3	18	78	12	64	39	0	3	57	1.16
25879513--25879554	16	2.6	16	85	11	50	64	9	2	23	1.35
25882496--25882568	37	2.0	36	89	2	110	57	5	4	32	1.41
25882524--25882626	51	1.9	55	83	11	135	60	5	5	28	1.43
25882558--25882604	20	2.5	19	82	6	51	65	6	4	23	1.33
25882546--25882703	77	2.1	73	87	4	217	63	4	4	27	1.32
25882643--25882690	20	2.4	20	89	6	71	66	4	2	27	1.21
25882576--25882691	11	10.6	11	68	20	66	64	3	3	28	1.26
25882646--25882691	21	2.2	21	88	3	67	71	2	2	23	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25884136--25884178	12	3.6	12	87	12	54	44	0	2	53	1.13
25884231--25884285	27	2.0	27	86	6	76	36	3	0	60	1.15
25884015--25884552	243	2.2	241	90	3	861	39	3	5	51	1.44
25884454--25884503	20	2.4	21	80	9	59	36	0	0	64	0.94
25884695--25884742	22	2.2	23	88	7	73	37	0	0	62	0.95
25884693--25884768	24	3.3	23	80	7	82	34	0	1	64	1.02
25885049--25885090	17	2.7	15	82	17	50	35	2	0	61	1.09
25889544--25889958	53	7.7	52	77	11	374	31	15	22	30	1.95
25889489--25889947	53	8.5	54	77	7	355	32	15	23	28	1.95
25889571--25889881	58	5.7	58	75	10	235	34	14	21	29	1.93
25889686--25889958	51	5.2	51	79	9	257	29	14	23	32	1.94
25891949--25891974	7	3.7	7	100	0	52	11	0	0	88	0.52
25894077--25894131	25	2.4	23	85	14	78	32	9	20	38	1.84
25894086--25894134	25	2.0	25	100	0	98	28	10	20	40	1.85
25895427--25895466	21	1.9	21	89	0	62	37	25	7	30	1.83
25896052--25896269	41	5.2	41	84	2	247	27	26	10	36	1.89
25896052--25896269	82	2.6	83	84	6	298	27	26	10	36	1.89
25900051--25900125	21	3.6	21	76	7	71	32	24	12	32	1.91
25911895--25911940	22	2.0	22	87	4	65	0	30	0	69	0.89
25911896--25911950	17	3.3	17	73	16	53	0	36	0	63	0.95
25918991--25919025	19	1.9	18	88	11	54	62	5	8	22	1.45
25921818--25921871	17	3.1	17	78	5	63	55	11	9	24	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25921828--25921871	18	2.5	18	85	3	63	56	13	9	20	1.64
25921983--25922026	21	2.1	21	83	8	54	2	27	11	59	1.44
25935568--25935607	20	1.9	21	85	10	55	37	15	0	47	1.45
25948344--25948368	8	3.1	8	100	0	50	48	12	12	28	1.76
25952009--25952084	29	2.6	29	93	0	134	34	31	10	23	1.89
25973497--25973543	24	2.0	24	91	0	76	65	8	21	4	1.37
25977923--25977968	20	2.4	19	82	14	58	17	13	8	60	1.56
25977923--25977968	18	2.3	20	85	10	60	17	13	8	60	1.56
25984013--25984142	26	5.2	26	63	20	89	45	14	7	32	1.73
25984008--25984167	49	3.3	49	94	3	286	43	15	6	33	1.73
25984361--25984393	17	1.9	17	93	0	57	51	9	18	21	1.73
25998387--25998413	12	2.2	12	100	0	54	48	18	7	25	1.74
26002233--26002266	10	3.3	10	87	4	50	0	20	0	79	0.73
26016803--26016845	22	2.0	22	82	17	54	13	9	0	76	1.01
26019889--26019943	28	2.0	28	85	0	74	32	14	27	25	1.95
26026746--26026880	51	2.6	51	87	3	182	34	15	22	28	1.94
26030942--26031099	55	2.9	55	80	3	174	27	17	25	29	1.98
26038619--26038723	26	4.0	26	76	7	106	26	19	22	31	1.98
26044004--26044043	17	2.3	18	83	12	57	55	12	17	15	1.70
26048689--26048847	81	2.0	81	96	0	291	26	26	16	30	1.97
26066029--26066092	26	2.5	26	81	0	83	28	20	21	29	1.98
26068546--26068587	21	2.0	21	85	0	57	11	9	23	54	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26098898--26099039	71	2.0	71	98	0	275	21	29	14	34	1.93
26101722--26101775	26	2.1	26	82	6	65	29	14	18	37	1.91
26102863--26102927	33	1.9	33	84	9	87	15	6	7	70	1.30
26103910--26103938	9	3.3	9	90	9	51	72	0	27	0	0.85
26110578--26110614	12	3.1	12	100	0	74	8	0	16	75	1.02
26111167--26111366	103	1.9	104	85	3	278	34	11	24	30	1.90
26119035--26119091	17	3.3	17	90	2	78	50	12	17	19	1.77
26123994--26124043	26	1.9	26	83	0	64	38	22	12	28	1.89
26126808--26126841	13	2.5	13	90	4	50	14	5	11	67	1.39
26130938--26130969	5	6.4	5	92	0	55	78	0	21	0	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143