genome.fa.s11.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  20  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6140286--6140416	3	42.0	3	68	18	63	35	3	3	58	1.32
6141121--6141169	6	8.8	6	78	17	61	55	0	0	44	0.99
6141117--6141168	15	3.3	15	87	10	77	51	0	0	48	1.00
6141122--6141171	17	3.1	17	94	5	86	56	0	0	44	0.99
6141423--6142089	92	7.4	92	90	4	1069	32	17	15	34	1.92
6141565--6141722	52	3.3	51	65	23	124	32	17	14	35	1.90
6141497--6142089	264	2.2	265	91	3	945	32	17	15	34	1.92
6141423--6142089	356	1.9	352	93	1	1163	32	17	15	34	1.92
6142429--6142537	6	18.0	6	74	16	82	48	0	2	47	1.22
6142433--6142497	17	4.1	15	81	15	78	41	0	4	53	1.21
6142437--6142497	31	2.0	31	90	6	97	40	0	4	54	1.22
6142419--6142497	11	6.9	11	74	18	56	40	0	5	54	1.22
6142485--6142537	20	2.8	18	80	11	52	60	1	0	37	1.08
6143214--6143298	19	4.4	19	73	16	75	58	0	4	36	1.19
6143552--6143594	22	1.9	23	90	4	70	76	4	16	2	1.05
6143612--6143641	11	2.7	11	89	0	51	10	23	56	10	1.62
6144033--6144371	162	2.1	162	89	2	511	25	17	13	44	1.85
6144445--6144558	30	3.8	30	86	4	142	38	21	1	37	1.64
6144531--6144723	59	3.3	58	86	5	246	30	29	4	35	1.76
6144568--6144723	30	5.2	30	72	23	123	28	29	5	37	1.79
6144568--6144729	59	2.7	59	92	3	263	27	30	5	36	1.80
6150588--6150623	18	2.0	18	88	0	54	5	30	2	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6157511--6157762	60	4.3	59	86	5	325	36	4	27	31	1.76
6157545--6157830	30	9.8	28	69	22	108	39	4	24	31	1.75
6157717--6157903	30	6.3	29	79	8	139	42	3	20	33	1.70
6157745--6157905	30	5.4	29	83	5	198	41	3	20	34	1.68
6159027--6159099	3	23.7	3	75	10	67	41	0	1	57	1.07
6159034--6159101	25	2.6	27	86	6	86	42	0	1	55	1.08
6159020--6159101	9	8.9	9	80	10	76	40	0	2	57	1.12
6159820--6159885	6	12.0	6	72	18	63	54	3	0	42	1.15
6159821--6159885	11	6.0	11	74	13	55	55	3	0	41	1.15
6160171--6160215	15	3.1	15	76	17	51	71	0	0	28	0.87
6160209--6160316	28	3.9	28	83	1	119	60	13	4	21	1.52
6160277--6160315	14	2.9	14	80	3	53	64	12	0	23	1.28
6164285--6164324	2	20.0	2	100	0	80	50	0	0	50	1.00
6167686--6167719	18	2.0	18	88	11	54	38	0	0	61	0.96
6167703--6167769	11	6.4	11	71	22	54	46	1	0	52	1.09
6167703--6167769	21	3.2	22	74	16	70	46	1	0	52	1.09
6167703--6167763	22	2.8	22	80	14	74	49	0	0	50	1.00
6170070--6170129	22	2.7	21	78	19	68	15	8	1	75	1.12
6170074--6170127	16	3.6	15	75	7	56	14	7	1	75	1.09
6170084--6170129	20	2.2	22	88	7	69	15	6	2	76	1.09
6172304--6172356	27	2.0	27	88	0	79	45	11	7	35	1.69
6173299--6173331	14	2.4	14	100	0	66	42	0	21	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6175099--6175132	18	1.9	18	88	5	52	35	5	2	55	1.39
6175732--6175766	3	11.7	3	100	0	70	31	0	0	68	0.90
6175881--6175925	22	2.0	22	100	0	90	26	17	31	24	1.97
6176183--6176220	19	2.1	19	90	5	60	50	2	5	42	1.39
6177006--6177195	30	6.4	29	67	15	86	30	24	3	41	1.72
6177095--6177429	59	5.7	60	78	5	274	30	24	5	39	1.78
6177022--6177307	30	9.7	29	65	14	84	29	23	4	42	1.74
6177115--6177428	117	2.7	117	79	3	326	31	25	5	37	1.78
6177294--6177387	29	3.2	29	72	8	82	35	21	7	36	1.81
6177230--6177461	117	2.0	117	79	3	252	31	25	6	36	1.82
6182886--6183124	29	8.2	28	67	17	89	30	26	4	38	1.75
6182897--6183124	59	3.9	58	79	11	234	30	25	3	39	1.74
6182939--6183183	116	2.1	118	80	8	277	31	26	4	38	1.75
6182960--6183265	116	2.6	115	78	7	269	32	25	5	36	1.78
6183105--6183265	59	2.7	59	75	8	157	34	26	6	32	1.81
6184908--6184947	6	6.5	6	88	5	62	37	0	60	2	1.11
6188360--6188415	20	2.8	20	81	13	71	55	5	1	37	1.33
6188358--6188404	18	2.6	19	86	6	71	57	4	0	38	1.18
6188360--6188416	19	3.0	18	84	7	69	54	5	1	38	1.33
6188681--6188743	26	2.4	26	91	0	108	25	25	11	38	1.89
6192661--6192691	11	2.9	11	95	4	55	0	12	0	87	0.55
6192660--6192693	16	2.3	15	85	14	52	0	11	0	88	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6196599--6196634	15	2.3	16	90	4	56	55	11	5	27	1.57
6197016--6197064	19	2.5	20	83	6	66	61	6	0	32	1.21
6197326--6197369	21	2.1	21	83	8	54	27	27	6	38	1.82
6198783--6198824	22	1.9	22	85	0	57	61	4	0	33	1.17
6199863--6199943	13	6.2	12	78	14	54	18	1	32	48	1.56
6199870--6199941	13	5.5	13	79	14	69	19	1	31	47	1.58
6199870--6199943	26	2.8	25	80	11	78	18	1	31	48	1.57
6200397--6200440	21	2.1	21	100	0	88	31	9	13	45	1.75
6202985--6203037	19	2.9	18	69	5	52	30	0	62	7	1.23
6205274--6205308	13	2.7	13	100	0	70	34	45	8	11	1.71
6207459--6207488	3	10.0	3	100	0	60	33	0	66	0	0.92
6214268--6214363	41	2.3	41	92	3	158	36	28	6	29	1.81
6223029--6223083	28	2.0	27	82	13	67	41	5	7	45	1.55
6230587--6230633	21	2.2	21	92	0	76	25	14	36	23	1.93
6232602--6232777	91	1.9	94	84	4	232	47	12	1	38	1.51
6233129--6233162	9	3.8	9	96	0	59	0	50	0	50	1.00
6234313--6234375	17	3.8	16	91	6	81	39	4	0	55	1.21
6235020--6235056	16	2.2	17	90	4	58	64	0	2	32	1.07
6235477--6235510	13	2.6	13	85	0	50	79	0	17	2	0.86
6236006--6236213	29	7.2	29	76	7	172	38	25	2	33	1.69
6236032--6236213	28	6.3	28	74	11	152	39	25	2	33	1.68
6236334--6236368	14	2.4	14	90	4	52	22	5	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6238256--6238303	20	2.5	19	76	6	51	39	2	4	54	1.32
6242400--6242443	18	2.5	18	81	3	54	50	4	0	45	1.22
6244215--6244263	21	2.3	21	89	0	71	34	24	16	24	1.95
6246852--6247038	40	4.7	40	83	1	232	36	21	16	26	1.94
6253208--6253344	63	2.2	63	81	2	159	21	5	46	26	1.73
6262942--6263032	6	15.7	6	73	11	64	48	2	2	47	1.26
6262928--6262972	17	2.6	18	82	3	56	40	4	2	53	1.33
6262963--6263029	35	1.9	35	84	6	91	44	1	2	50	1.26
6262947--6263031	17	4.9	17	76	9	73	45	2	2	49	1.27
6264664--6264979	163	1.9	163	86	3	449	27	18	11	42	1.85
6265083--6265244	30	5.4	30	70	22	135	33	26	3	36	1.72
6265052--6265252	59	3.4	59	92	2	332	32	29	3	33	1.76
6265054--6265244	29	6.5	30	71	21	136	33	27	3	35	1.73
6265053--6265286	118	2.0	119	86	4	330	31	29	5	33	1.80
6277352--6278190	76	11.0	76	93	0	1365	35	15	16	32	1.90
6278483--6278590	11	9.3	12	72	11	82	47	1	1	49	1.23
6278483--6278590	6	18.7	6	74	11	82	47	1	1	49	1.23
6278469--6278559	41	2.2	41	84	1	130	39	3	2	54	1.29
6278504--6278584	17	4.7	17	86	6	101	44	1	2	51	1.22
6279362--6279417	9	6.0	9	79	8	58	51	1	3	42	1.29
6280227--6280553	162	2.0	162	83	2	415	26	18	11	42	1.85
6280628--6280822	59	3.3	58	89	6	286	32	28	3	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6280628--6280857	117	2.0	115	83	8	295	30	28	5	35	1.79
6297080--6297270	95	2.0	95	90	0	301	19	22	20	37	1.94
6303241--6303284	23	2.0	22	86	4	61	45	15	0	38	1.47
6317495--6317579	22	3.9	22	75	16	79	22	28	14	35	1.93
6324823--6324862	21	2.0	20	95	5	71	75	10	0	15	1.05
6328186--6328237	21	2.5	21	84	6	70	30	28	13	26	1.94
6328984--6329436	201	2.3	194	80	6	502	26	26	18	27	1.98
6340340--6340382	23	2.0	23	86	9	63	62	0	0	37	0.95
6340525--6340568	22	2.0	22	86	8	63	34	2	2	61	1.21
6340525--6340581	22	2.6	22	83	8	62	33	1	1	63	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143