genome.fa.s11.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  136  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40398254--40398354	46	2.2	46	83	1	121	65	16	6	10	1.45
40398259--40398354	23	4.2	22	76	7	66	66	15	7	10	1.42
40398351--40398431	22	3.8	20	80	8	74	70	18	4	6	1.27
40400127--40400172	15	3.2	14	82	14	58	76	0	0	23	0.79
40400136--40400175	12	3.3	12	85	0	53	75	0	0	25	0.81
40400138--40400175	20	1.9	20	84	10	51	76	0	0	23	0.79
40401467--40401510	19	2.4	18	82	14	54	29	11	9	50	1.69
40403565--40403614	24	2.1	24	85	7	66	30	10	6	54	1.58
40407949--40407999	3	17.0	3	100	0	102	33	0	0	66	0.92
40410706--40410769	31	2.1	31	85	5	85	37	15	17	29	1.91
40411906--40411955	18	2.8	17	82	17	66	62	0	0	38	0.96
40411903--40411955	8	6.2	9	77	18	60	64	0	0	35	0.94
40411906--40411957	17	3.0	16	81	13	59	59	0	0	40	0.97
40415604--40415645	19	2.3	19	80	12	52	28	0	16	54	1.42
40440303--40440332	4	7.5	4	92	0	51	46	26	3	23	1.68
40441301--40441346	24	1.9	24	86	8	67	36	0	4	58	1.18
40446319--40446356	18	2.1	19	85	14	53	81	2	13	2	0.90
40447120--40447156	18	2.1	18	89	0	56	48	0	27	24	1.51
40447260--40447362	37	2.7	38	72	6	91	25	19	24	31	1.98
40451126--40451161	11	3.3	11	100	0	72	27	8	8	55	1.58
40452985--40453023	21	1.9	19	85	10	51	43	2	2	51	1.29
40453931--40453968	20	2.0	20	85	15	53	55	2	0	42	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40457098--40457134	3	12.3	3	94	0	56	32	5	32	29	1.80
40459413--40459450	18	2.0	20	85	10	53	71	0	0	28	0.87
40459423--40459484	20	3.1	20	73	13	56	53	0	0	46	1.00
40464379--40464414	2	18.0	2	100	0	72	50	0	0	50	1.00
40480042--40480098	27	2.1	27	100	0	114	42	0	7	50	1.29
40482528--40482561	14	2.3	15	90	5	52	26	0	0	73	0.83
40493453--40493497	13	3.5	13	82	11	56	55	0	4	40	1.20
40499975--40500031	28	2.2	24	80	17	62	33	5	8	52	1.55
40502314--40502358	24	1.9	23	90	4	72	71	4	22	2	1.15
40505749--40505773	6	4.2	6	100	0	50	32	0	20	48	1.50
40509991--40510113	20	6.1	18	72	20	75	55	0	4	39	1.27
40509991--40510099	20	5.4	19	74	10	83	55	0	3	39	1.24
40510022--40510099	30	2.6	29	76	15	79	58	1	2	37	1.20
40510259--40510292	11	3.2	11	87	8	52	61	0	0	38	0.96
40510331--40510357	9	3.0	9	100	0	54	33	0	0	66	0.92
40510408--40510519	20	5.7	18	76	16	91	35	5	1	57	1.32
40515372--40515406	14	2.5	14	90	0	52	14	0	34	51	1.42
40520303--40520348	21	2.2	21	88	0	65	69	4	2	23	1.17
40527011--40527291	69	4.1	69	82	5	311	39	11	18	30	1.86
40527031--40527285	138	1.8	138	85	3	361	40	11	17	30	1.85
40528109--40528188	39	2.1	39	85	4	108	37	7	8	46	1.63
40533567--40533595	13	2.1	14	93	6	51	34	0	6	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40536812--40536889	29	2.6	29	85	6	102	26	5	11	56	1.55
40545239--40545282	16	2.6	18	82	10	58	31	0	4	63	1.14
40547673--40547858	69	2.7	69	80	5	232	43	12	13	30	1.81
40548285--40548326	18	2.3	18	88	8	59	61	2	0	35	1.09
40560722--40560771	19	2.6	19	81	6	57	42	6	6	46	1.53
40561479--40561540	29	2.2	28	82	5	72	45	16	4	33	1.68
40562067--40562095	12	2.5	12	94	5	51	48	6	0	44	1.29
40566500--40566547	20	2.3	22	82	13	66	79	0	14	6	0.92
40569421--40569459	15	2.4	16	83	12	53	61	5	0	33	1.18
40579282--40579339	18	3.2	18	78	4	62	34	3	1	60	1.24
40579361--40579422	9	6.9	9	72	7	54	29	3	1	66	1.17
40580029--40580102	38	1.9	38	100	0	148	39	5	9	45	1.59
40583910--40583949	19	2.2	18	90	4	62	37	5	0	57	1.21
40590973--40591013	15	2.9	15	82	7	50	36	7	0	56	1.27
40591169--40591254	35	2.5	34	83	11	95	26	10	1	61	1.35
40596601--40596627	13	2.1	13	100	0	54	51	7	0	40	1.30
40601588--40601620	16	2.1	17	88	11	52	36	0	0	63	0.95
40604396--40604448	25	2.1	25	82	0	61	30	0	15	54	1.41
40607735--40607777	20	2.2	20	87	8	61	74	4	6	13	1.19
40616268--40616299	4	8.5	4	86	13	50	56	25	0	18	1.42
40635043--40635110	34	2.1	32	83	10	84	30	4	2	61	1.30
40646053--40646092	19	2.1	19	86	9	55	47	7	2	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40647096--40647142	13	3.5	13	80	8	58	55	0	6	38	1.26
40653625--40653666	20	2.1	20	100	0	84	42	14	16	26	1.86
40663817--40663881	28	2.5	24	73	20	67	29	3	10	56	1.48
40663800--40663885	28	3.4	23	69	22	57	29	2	12	55	1.49
40665251--40665301	23	2.3	23	86	6	79	56	3	5	33	1.42
40665243--40665302	23	2.6	22	75	19	68	55	3	5	36	1.38
40669829--40669858	15	2.0	15	100	0	60	66	0	13	20	1.24
40676548--40676736	29	6.5	28	71	18	129	35	2	30	31	1.70
40676548--40676744	58	3.4	58	86	4	272	36	2	30	31	1.69
40678368--40678405	14	2.7	14	84	8	51	31	5	13	50	1.63
40678403--40678510	17	6.3	17	81	5	128	54	4	0	39	1.27
40678419--40678482	6	11.0	6	74	12	53	54	4	1	39	1.31
40678433--40678482	23	2.2	23	89	7	75	56	6	0	38	1.24
40679450--40679521	36	2.0	36	100	0	144	25	36	8	30	1.85
40684213--40684368	76	2.0	77	93	1	269	58	12	10	18	1.61
40694066--40694146	31	2.8	29	77	18	82	64	0	0	35	0.94
40695092--40695163	17	4.3	16	75	8	72	40	2	5	51	1.40
40695092--40695163	34	2.2	33	82	7	92	40	2	5	51	1.40
40695962--40696222	30	8.7	30	70	11	133	36	26	5	32	1.79
40696054--40696403	58	6.0	57	75	8	160	34	27	4	33	1.78
40696176--40696488	29	10.8	29	69	10	90	33	26	5	34	1.79
40696177--40696488	116	2.7	116	78	6	294	33	26	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40696177--40696476	58	5.2	57	75	10	234	34	25	5	34	1.80
40696266--40696489	58	3.9	59	78	10	241	33	27	5	32	1.81
40696266--40696489	87	2.6	87	80	11	255	33	27	5	32	1.81
40696266--40696506	29	8.3	29	71	13	156	34	27	5	32	1.81
40706517--40706555	7	5.6	7	87	0	60	41	7	15	35	1.76
40706517--40706556	14	2.9	14	100	0	80	40	7	15	37	1.75
40707356--40707404	16	3.1	17	77	8	50	51	2	0	46	1.12
40709448--40709523	29	2.6	29	79	8	75	39	6	23	30	1.80
40709510--40709731	30	7.5	30	81	4	218	36	4	24	34	1.76
40709510--40709723	59	3.6	60	77	5	220	35	4	25	33	1.77
40710795--40710834	6	6.8	6	85	5	55	55	0	0	45	0.99
40711815--40712155	30	11.5	29	78	8	273	38	3	21	35	1.71
40711787--40712184	30	13.5	29	78	9	265	39	3	21	35	1.71
40712284--40712333	17	2.9	17	84	0	64	38	4	6	52	1.45
40714334--40714406	30	2.5	30	90	2	112	41	26	4	28	1.74
40714364--40714737	59	6.4	58	78	6	306	33	25	5	35	1.78
40714333--40714737	29	13.8	29	72	12	213	33	25	5	35	1.78
40714663--40714765	29	3.6	28	73	12	77	29	27	8	34	1.87
40716920--40716959	6	6.8	6	85	5	55	55	0	0	45	0.99
40720934--40720967	17	2.0	17	88	0	50	35	0	11	52	1.38
40720957--40721019	17	3.7	17	77	12	58	39	0	4	55	1.21
40720957--40721045	33	2.6	33	80	7	90	40	2	5	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40721741--40721778	3	13.0	3	84	15	53	65	2	0	31	1.06
40721728--40721768	16	2.6	16	92	0	64	58	4	0	36	1.20
40721728--40721778	16	3.2	16	86	5	50	60	3	0	35	1.15
40722786--40723084	30	10.0	30	85	1	359	36	24	2	36	1.70
40723057--40723257	59	3.4	57	70	10	165	29	27	4	38	1.76
40734973--40735418	68	6.5	68	92	0	730	34	15	20	29	1.94
40741256--40741368	38	2.9	40	71	11	108	22	19	25	32	1.97
40741258--40741392	40	3.4	39	73	12	116	22	20	26	30	1.98
40743049--40743089	3	14.0	3	85	14	59	65	2	0	31	1.05
40743036--40743089	16	3.6	16	87	7	69	61	3	0	35	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143