genome.fa.s11.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  46  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14563016--14563071	21	2.6	22	77	8	62	28	0	25	46	1.53
14565895--14565926	16	2.0	17	88	11	50	59	9	0	31	1.29
14568356--14568407	25	2.1	24	86	10	70	5	17	1	75	1.10
14568423--14568495	13	6.0	12	75	13	60	53	1	0	45	1.09
14575387--14575438	25	2.1	24	86	10	70	5	17	1	75	1.10
14575453--14575490	3	13.3	3	83	10	53	63	0	0	36	0.95
14575453--14575490	11	3.4	11	89	10	51	63	0	0	36	0.95
14575454--14575490	14	2.6	14	88	12	58	64	0	0	35	0.94
14575453--14575525	13	6.0	12	78	13	69	56	0	0	43	0.99
14581510--14581661	80	1.9	80	91	0	250	30	26	21	22	1.99
14596096--14596382	43	6.7	43	87	3	382	34	10	26	28	1.90
14596210--14596277	20	3.0	23	62	23	54	38	10	23	27	1.87
14596096--14596379	130	2.2	129	87	3	410	34	10	26	28	1.90
14596177--14596435	43	6.0	42	85	3	133	35	11	24	29	1.90
14610557--14610593	16	2.2	17	90	4	58	40	2	0	56	1.13
14613388--14615680	265	8.7	265	82	4	2458	37	15	16	30	1.90
14613395--14615680	526	4.3	525	81	6	2469	37	15	16	30	1.90
14616754--14616839	26	3.3	26	75	0	82	27	25	18	27	1.98
14618883--14619821	263	3.6	263	82	3	1043	36	16	16	30	1.91
14620135--14620222	32	2.8	32	87	0	122	28	2	19	50	1.60
14621625--14621658	14	2.4	15	90	9	54	41	14	2	41	1.61
14631627--14631671	19	2.4	19	81	7	56	35	0	6	57	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14637095--14637364	59	4.5	59	85	6	348	32	13	21	32	1.92
14637094--14637363	119	2.2	120	84	8	352	32	13	21	32	1.92
14640758--14640801	18	2.4	19	81	11	56	77	15	0	6	0.97
14642146--14642203	30	1.9	30	86	6	82	29	1	1	67	1.11
14647337--14647628	42	6.9	42	83	4	311	30	24	18	26	1.98
14648504--14648546	5	8.2	5	85	10	50	18	6	0	74	1.04
14648519--14648552	12	2.8	12	90	0	50	17	2	0	79	0.86
14648511--14648552	17	2.5	17	92	3	68	16	4	0	78	0.91
14648506--14648546	22	1.9	21	90	5	64	17	7	0	75	1.02
14649698--14649748	24	2.2	22	82	10	57	25	9	1	62	1.36
14653196--14653279	25	3.3	25	85	5	98	33	26	21	19	1.97
14653241--14653313	27	2.8	27	87	10	107	38	26	16	19	1.92
14659140--14659192	25	2.1	25	100	0	106	35	5	18	39	1.75
14662295--14662372	41	1.9	41	84	5	104	38	8	7	44	1.65
14662576--14662608	16	2.1	16	88	5	50	18	9	3	69	1.28
14663211--14663286	31	2.5	31	84	2	109	30	9	9	51	1.65
14663149--14663337	89	2.1	91	80	7	208	28	7	11	52	1.65
14663553--14663666	59	2.0	57	82	3	138	56	7	11	24	1.61
14664015--14664153	69	2.0	69	98	0	269	31	20	20	27	1.97
14664286--14664318	14	2.4	14	90	5	50	42	3	0	54	1.15
14665135--14665176	21	1.9	21	90	9	66	69	2	0	28	1.01
14665181--14665218	20	1.9	20	88	0	58	63	0	2	34	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14670282--14670321	12	3.2	12	82	3	53	37	0	2	60	1.11
14676149--14676187	20	1.9	21	84	5	53	46	10	10	33	1.72
14679620--14679660	17	2.4	17	83	0	55	17	26	26	29	1.97
14679632--14679680	17	2.9	17	87	0	62	20	24	24	30	1.98
14681936--14681966	13	2.3	14	94	5	55	70	12	0	16	1.16
14683342--14683386	23	2.0	23	86	0	63	28	4	6	60	1.42
14684716--14684759	21	2.1	21	83	8	54	25	9	2	63	1.35
14685347--14685373	14	1.9	14	100	0	54	44	25	0	29	1.54
14689646--14689688	21	2.0	21	100	0	86	41	13	9	34	1.77
14691485--14691519	2	17.5	2	100	0	70	48	0	51	0	1.00
14693090--14693778	343	2.0	343	99	0	1360	34	11	9	44	1.74
14697516--14697544	13	2.2	13	100	0	58	41	0	0	58	0.98
14698857--14699139	142	2.0	142	94	0	494	28	17	13	40	1.87
14702512--14702587	31	2.5	30	84	2	98	32	13	9	44	1.75
14704120--14704149	15	2.0	15	93	0	51	63	20	6	10	1.47
14708497--14708557	28	2.1	29	85	11	90	27	13	26	32	1.93
14708590--14708737	58	2.6	58	80	6	176	40	8	20	29	1.83
14708639--14708855	29	7.4	29	71	19	148	35	5	25	34	1.78
14708590--14708781	59	3.3	57	81	6	174	39	7	22	30	1.83
14708719--14708895	30	5.9	30	77	10	157	33	3	27	35	1.75
14708632--14708884	59	4.3	59	85	6	266	35	5	24	34	1.78
14708713--14708859	29	5.0	29	79	11	165	34	2	27	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14710905--14710984	23	3.5	23	80	10	85	56	3	1	38	1.25
14710906--14711012	17	6.3	17	81	3	108	55	5	1	37	1.34
14710905--14710963	28	2.1	28	84	6	75	55	5	0	38	1.22
14710906--14710984	6	13.8	6	74	10	67	55	3	1	39	1.26
14711351--14711564	115	1.9	114	95	1	383	18	21	25	34	1.96
14711426--14712260	201	4.1	201	90	2	1224	21	22	20	36	1.96
14711877--14712619	359	2.1	359	95	0	1335	21	21	21	35	1.96
14712078--14712413	153	2.2	155	85	3	444	22	21	21	35	1.96
14712236--14712755	206	2.6	201	86	3	716	21	21	20	35	1.96
14711676--14712755	560	1.9	556	88	3	1621	21	21	20	36	1.96
14713261--14713357	50	1.9	50	87	4	142	10	24	22	42	1.85
14714324--14714361	13	2.8	13	88	4	58	0	13	0	86	0.56
14719439--14719630	96	2.0	96	80	8	212	36	11	19	32	1.87
14719839--14720089	116	2.1	117	82	7	287	38	6	23	31	1.81
14719863--14720057	29	6.7	29	63	12	78	39	6	23	30	1.79
14719863--14720148	58	4.9	59	76	11	225	37	6	23	32	1.80
14720042--14720218	30	5.9	30	78	10	175	35	5	23	36	1.77
14720009--14720215	59	3.5	59	82	8	219	35	5	22	35	1.78
14722260--14722350	11	8.1	11	71	9	67	57	3	1	38	1.23
14722261--14722350	17	5.3	17	83	0	117	56	3	1	38	1.23
14722261--14722322	6	10.8	6	74	10	58	56	1	1	40	1.19
14724124--14724190	24	2.8	24	83	2	80	62	1	1	34	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14724129--14724183	19	2.9	19	86	0	65	63	1	1	32	1.15
14733343--14733769	166	2.6	166	98	0	820	32	11	25	30	1.91
14744920--14744962	20	2.2	20	100	0	86	27	6	23	41	1.80
14746931--14746963	2	16.5	2	100	0	66	48	0	0	51	1.00
14750899--14750944	20	2.2	21	84	3	58	60	6	8	23	1.49
14754604--14754649	17	2.7	17	90	6	67	45	2	2	50	1.26
14754605--14754663	10	5.9	10	74	21	61	44	1	1	52	1.21
14756338--14756370	17	1.9	17	88	11	50	27	9	9	54	1.62
14756484--14756970	30	16.5	29	71	16	226	35	24	3	35	1.74
14756703--14756940	88	2.7	87	80	10	272	36	24	3	35	1.74
14756484--14756978	59	8.4	56	75	12	297	35	24	4	36	1.74
14770987--14771490	160	3.2	160	77	14	566	37	19	21	22	1.94
14771221--14771974	209	3.6	208	85	4	979	36	18	23	22	1.95
14774124--14774450	30	11.2	29	75	11	152	37	24	2	36	1.70
14774153--14774255	29	3.6	28	74	9	91	41	19	0	37	1.58
14774117--14774403	30	9.7	29	75	13	153	37	24	2	35	1.70
14774184--14774489	58	5.3	58	75	10	200	35	24	3	36	1.72
14774313--14774496	28	6.4	29	77	13	139	32	25	3	39	1.72
14774302--14774489	57	3.2	60	80	8	194	35	23	2	38	1.69
14774302--14774541	29	8.3	29	77	9	120	34	24	4	36	1.76
14774447--14774596	29	5.2	29	76	9	101	32	25	10	31	1.90
14783767--14784260	43	11.9	43	75	10	379	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14783806--14784261	81	5.5	81	84	4	468	23	17	27	31	1.97
14787097--14787139	20	2.2	20	86	0	59	41	27	4	25	1.75
14787168--14787263	44	2.1	44	84	7	122	33	4	20	41	1.72
14793453--14793580	60	2.1	62	88	2	188	53	3	0	42	1.22
14793453--14793602	60	2.5	60	85	5	185	53	2	1	42	1.23
14799846--14799925	15	5.3	15	67	0	61	26	23	23	26	2.00
14799873--14799930	30	1.9	30	82	0	71	29	20	22	27	1.99
14800641--14800674	17	2.0	17	88	0	50	44	23	5	26	1.76
14808966--14808991	12	2.2	12	100	0	52	34	0	23	42	1.54
14812784--14812848	22	3.0	22	90	0	103	30	16	21	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143