genome.fa.s11.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  142  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42511090--42511126	12	3.1	12	92	0	65	21	27	0	51	1.48
42511090--42511122	6	5.5	6	92	0	57	21	30	0	48	1.50
42513122--42513205	20	4.3	19	73	14	82	3	7	20	69	1.28
42513135--42513194	17	3.3	17	79	11	66	3	6	21	68	1.28
42513202--42513314	12	9.9	12	71	12	78	7	3	19	69	1.29
42513202--42513315	24	5.1	22	73	21	94	7	3	19	69	1.28
42513182--42513288	31	3.3	31	81	11	110	8	3	18	69	1.30
42513232--42513328	43	2.2	44	87	5	135	8	2	20	69	1.25
42513239--42513302	31	2.1	30	82	11	76	6	3	21	68	1.26
42514835--42514924	42	2.1	42	89	0	135	30	3	14	52	1.58
42514835--42514946	42	2.8	42	84	8	117	31	3	12	52	1.56
42516007--42516064	31	1.9	31	86	13	86	48	1	1	48	1.22
42527488--42527573	42	2.0	42	100	0	172	24	16	16	43	1.87
42528409--42528434	3	8.7	3	100	0	52	34	0	34	30	1.58
42528433--42528475	3	14.0	3	95	4	77	65	0	34	0	0.93
42529091--42529133	22	1.9	23	86	13	63	34	27	4	32	1.78
42530654--42530691	20	1.9	20	88	0	58	26	0	2	71	1.00
42531060--42531113	22	2.3	23	87	9	74	20	3	12	62	1.45
42535444--42535817	59	6.4	57	82	7	394	36	3	28	31	1.74
42535597--42535756	29	5.5	28	68	17	83	36	1	29	32	1.68
42535449--42535817	177	2.1	177	85	5	489	36	3	28	31	1.73
42535625--42535786	30	5.4	30	68	19	115	37	2	27	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42535449--42535865	59	7.1	57	80	10	380	36	3	27	31	1.73
42535419--42535848	118	3.6	117	83	5	447	36	3	27	32	1.75
42535708--42535904	30	6.7	29	71	13	125	36	2	25	36	1.68
42535419--42535904	118	4.1	117	80	7	371	36	3	26	32	1.74
42535767--42535925	60	2.7	59	82	6	171	36	2	24	36	1.69
42535769--42535926	30	5.3	30	76	7	135	36	2	24	37	1.69
42537694--42537769	6	13.2	6	73	13	52	48	2	2	46	1.30
42537727--42537784	17	3.5	16	79	6	62	56	5	0	37	1.21
42537774--42537807	17	2.0	17	88	0	50	52	11	0	35	1.38
42542823--42542894	31	2.3	32	76	7	76	36	5	8	50	1.56
42549105--42549142	19	2.0	20	89	5	60	15	0	13	71	1.16
42551561--42551590	2	15.0	2	100	0	60	50	0	0	50	1.00
42567654--42567879	109	2.0	111	92	6	375	42	9	11	36	1.73
42568524--42568553	16	1.9	15	93	6	51	70	13	6	10	1.34
42569582--42569615	3	11.3	3	87	0	50	29	2	0	67	1.05
42573645--42573753	56	1.9	56	88	0	164	29	11	10	48	1.72
42575660--42575718	31	2.0	30	86	6	84	35	10	10	44	1.72
42575904--42575966	30	2.1	29	85	8	83	46	12	7	33	1.71
42575913--42575971	29	2.0	30	90	3	93	47	15	6	30	1.71
42577301--42577333	17	1.9	17	93	0	57	39	3	0	57	1.14
42579942--42580153	107	2.0	108	93	0	363	30	20	16	32	1.95
42589486--42589547	29	2.1	29	82	5	72	30	9	6	53	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42590106--42590146	18	2.2	19	86	8	57	60	4	0	34	1.18
42598980--42599039	3	20.0	3	85	0	84	60	3	3	33	1.30
42613938--42614128	105	1.8	105	84	0	265	29	21	23	25	1.99
42618469--42618516	25	2.0	24	83	4	60	45	4	0	50	1.21
42618694--42618763	32	2.2	31	82	14	81	47	1	1	50	1.19
42618875--42618941	27	2.5	27	82	0	89	22	25	14	37	1.93
42626617--42626663	24	2.0	24	82	0	58	21	2	4	72	1.12
42627245--42627286	12	3.5	12	83	9	59	64	0	2	33	1.07
42627250--42627334	23	3.7	23	74	10	75	61	0	2	36	1.09
42650078--42650303	110	2.0	108	83	5	281	29	10	15	44	1.80
42651237--42651883	207	3.1	203	83	8	817	28	20	17	33	1.95
42662474--42662499	2	13.0	2	100	0	52	50	0	50	0	1.00
42674639--42674716	31	2.5	31	100	0	156	55	10	15	19	1.68
42675606--42675633	2	14.0	2	100	0	56	50	0	0	50	1.00
42675633--42675662	2	15.0	2	100	0	60	50	0	50	0	1.00
42676322--42676353	17	1.9	16	93	6	55	46	21	12	18	1.82
42677339--42677365	7	3.9	7	100	0	54	29	14	14	40	1.86
42686010--42686048	8	4.9	8	81	12	53	66	0	0	33	0.92
42686667--42686697	2	15.0	2	93	6	53	48	3	0	48	1.17
42688232--42688311	29	2.6	30	88	5	108	43	13	8	33	1.75
42689689--42689747	31	1.9	31	86	6	84	52	0	0	47	1.00
42693573--42693654	27	2.8	30	81	10	107	9	10	54	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42693636--42695032	27	50.6	27	69	20	450	9	2	56	30	1.47
42693667--42696161	6	415.8	6	69	11	1199	10	2	57	29	1.43
42693636--42696157	57	44.9	55	73	16	1256	10	2	57	30	1.43
42693979--42696161	33	72.3	32	69	20	776	10	1	58	29	1.42
42694263--42696157	27	69.5	27	74	17	1159	10	1	58	29	1.41
42697117--42697175	2	29.5	2	96	0	109	49	1	0	49	1.11
42697717--42697773	24	2.5	22	77	11	60	50	7	1	40	1.40
42700620--42700737	20	5.9	20	76	5	80	38	5	14	41	1.68
42700654--42700795	20	7.2	20	73	8	96	35	5	16	42	1.71
42700830--42700891	20	3.2	19	79	6	70	30	4	14	50	1.64
42700965--42701032	20	3.4	19	82	8	82	36	4	20	38	1.73
42717422--42717477	25	2.2	24	80	17	69	30	0	1	67	1.01
42717423--42717470	25	1.9	26	87	8	73	31	0	2	66	1.03
42731429--42731461	3	11.0	3	100	0	66	0	33	0	66	0.92
42731492--42732135	225	3.0	216	80	6	721	18	27	11	42	1.84
42731709--42732126	210	2.0	211	84	3	545	17	27	11	43	1.84
42733822--42733854	14	2.4	14	90	5	50	24	0	3	72	0.98
42738637--42738675	12	3.1	14	86	13	50	48	0	0	51	1.00
42741438--42741485	23	2.1	23	92	0	78	56	4	4	35	1.38
42746918--42746952	18	1.9	18	88	0	52	34	2	2	60	1.26
42752509--42752538	15	2.0	15	93	0	51	26	30	6	36	1.82
42754998--42755049	26	2.0	26	100	0	104	15	19	7	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42761739--42761784	21	2.2	21	100	0	92	23	8	32	34	1.86
42774583--42774636	2	27.0	2	100	0	108	50	0	0	50	1.00
42779161--42779198	12	3.4	11	86	13	51	0	0	31	68	0.90
42779154--42779220	22	2.9	23	72	12	55	4	0	23	71	1.04
42779181--42779254	34	2.2	34	85	4	96	6	4	20	68	1.29
42779273--42779309	11	3.4	11	92	0	56	5	5	18	70	1.27
42779243--42779293	21	2.5	20	78	6	57	5	9	15	68	1.36
42779448--42779494	24	2.0	24	87	8	69	21	0	10	68	1.20
42779447--42779495	12	4.2	11	85	10	62	20	0	10	69	1.17
42816774--42816807	18	1.9	18	88	5	52	41	5	26	26	1.78
42817645--42817679	2	17.5	2	87	0	52	5	0	42	51	1.25
42817649--42817677	10	2.9	10	100	0	58	6	0	41	51	1.28
42817799--42817857	2	30.5	2	73	13	52	42	1	1	54	1.20
42818477--42818509	2	16.5	2	100	0	66	48	0	0	51	1.00
42824725--42824810	40	2.2	40	82	4	102	52	5	3	38	1.43
42843063--42843096	1	34.0	1	87	0	50	94	0	5	0	0.32
42845611--42845654	17	2.6	16	82	13	52	20	22	2	54	1.56
42845593--42845639	24	2.0	23	84	12	60	19	25	2	53	1.56
42847171--42847232	23	2.7	23	87	2	88	50	11	14	24	1.75
42851165--42851197	16	2.1	16	100	0	66	18	6	18	57	1.60
42855622--42855655	17	2.0	17	88	0	50	14	11	14	58	1.63
42866875--42866925	24	2.1	24	88	0	75	54	11	11	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42887103--42887489	130	3.0	130	88	2	557	34	16	12	36	1.86
42914507--42914533	10	2.7	10	100	0	54	11	0	0	88	0.50
42915219--42915293	27	2.8	25	90	8	105	42	1	0	56	1.08
42919237--42919286	13	3.9	12	82	17	57	40	10	2	48	1.48
42929403--42929447	22	2.0	22	91	0	72	62	20	6	11	1.50
42929408--42929471	22	3.0	22	84	8	71	67	23	3	6	1.28
42931937--42931970	2	17.0	2	100	0	68	50	0	50	0	1.00
42933808--42933869	15	3.9	16	73	10	56	58	3	25	12	1.50
42938852--42938889	17	2.2	18	85	4	51	52	0	5	42	1.24
42941851--42941897	15	3.1	15	78	6	58	44	31	0	23	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143