genome.fa.s11.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  84  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26606180--26606343	45	3.6	45	79	1	159	35	15	20	28	1.93
26606407--26606496	34	2.6	34	96	0	162	43	13	14	28	1.83
26606477--26606570	34	2.8	34	86	3	118	42	11	15	29	1.83
26606406--26606586	34	5.3	34	80	7	98	41	12	16	28	1.85
26608290--26608351	19	3.2	19	81	9	54	53	3	1	41	1.27
26615439--26615495	20	2.9	19	82	10	62	24	28	1	45	1.63
26615374--26615516	74	1.9	75	90	7	229	25	33	0	40	1.61
26620800--26620863	24	2.7	24	80	2	76	31	18	21	28	1.97
26629072--26629205	23	5.8	23	81	5	128	40	18	13	27	1.88
26629293--26629361	24	2.9	24	95	2	122	44	13	20	21	1.85
26629294--26629364	12	6.0	12	79	14	85	42	14	19	23	1.88
26630454--26630513	27	2.2	28	88	8	88	66	0	5	28	1.12
26637834--26637879	24	1.9	24	95	0	83	34	19	4	41	1.71
26641424--26641457	14	2.3	15	85	10	52	85	5	0	8	0.75
26643039--26643112	19	3.7	19	79	15	71	56	5	0	37	1.22
26643057--26643116	19	3.3	19	81	11	72	53	5	0	41	1.23
26655819--26655856	18	2.1	19	85	14	53	7	21	0	71	1.11
26655895--26655948	27	2.0	27	85	0	72	22	37	11	29	1.89
26656695--26656729	17	2.1	17	89	5	54	80	2	17	0	0.84
26657238--26657400	60	2.7	58	81	7	184	24	16	11	47	1.79
26657628--26657764	31	4.5	31	71	12	95	47	10	16	25	1.79
26663454--26663490	19	1.9	19	94	0	65	24	5	18	51	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26668789--26668842	21	2.6	21	76	5	56	31	25	12	29	1.93
26669557--26669951	52	7.6	52	90	0	583	36	21	14	28	1.92
26670265--26670294	14	2.1	14	100	0	60	23	36	0	40	1.55
26670428--26670459	16	2.0	16	93	0	55	25	18	3	53	1.59
26675599--26675880	30	9.4	30	83	8	279	36	0	26	36	1.62
26675597--26675886	60	4.8	60	83	5	318	36	0	26	36	1.62
26675594--26675880	90	3.2	89	81	6	328	36	0	26	36	1.62
26676710--26676758	10	5.1	10	82	9	57	40	4	6	48	1.47
26680797--26680870	38	1.9	38	83	5	96	32	22	12	32	1.91
26681719--26681749	16	1.9	16	93	0	53	22	16	0	61	1.34
26684029--26684086	17	3.4	17	82	0	71	20	17	10	51	1.74
26684709--26684747	20	2.0	20	94	0	69	35	10	15	38	1.81
26685269--26685359	37	2.5	37	87	0	137	29	34	16	19	1.94
26685375--26685472	38	2.6	38	77	7	119	29	24	15	30	1.95
26690160--26690209	19	2.7	20	72	12	52	64	0	0	36	0.94
26704578--26704619	21	2.0	21	90	0	66	19	14	28	38	1.90
26705680--26705771	24	3.8	24	91	0	103	21	26	17	34	1.95
26705664--26705780	48	2.4	48	82	0	135	21	29	17	31	1.96
26705710--26705783	24	3.1	24	96	0	130	20	29	17	32	1.95
26706915--26707134	28	7.9	28	84	2	244	51	10	15	22	1.73
26712689--26712721	17	1.9	17	88	11	50	48	3	6	42	1.43
26713029--26713099	8	8.6	8	73	14	56	29	1	2	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26713054--26713108	24	2.3	24	87	6	76	30	0	3	65	1.10
26713274--26713349	31	2.5	31	88	0	116	43	14	15	26	1.85
26713511--26713557	3	16.0	3	91	4	78	2	31	0	65	1.04
26713561--26713613	3	17.7	3	100	0	106	32	0	0	67	0.91
26716121--26716154	17	2.1	16	88	5	50	0	23	0	76	0.79
26716738--26716775	18	2.1	18	95	0	67	60	13	10	15	1.59
26716850--26716875	3	8.7	3	100	0	52	0	30	0	69	0.89
26721670--26721699	12	2.5	12	100	0	60	33	10	40	16	1.82
26735449--26735478	13	2.4	12	89	10	51	83	0	16	0	0.65
26747641--26747712	34	2.1	34	100	0	144	16	20	11	51	1.75
26753825--26753914	35	2.6	36	82	3	121	35	12	27	24	1.91
26754559--26754625	21	3.2	21	93	0	107	19	13	25	41	1.88
26757232--26757284	26	2.0	26	96	0	97	28	26	9	35	1.87
26761277--26761330	19	2.9	18	83	10	65	38	1	0	59	1.08
26761463--26761529	33	1.9	33	85	8	89	41	0	1	56	1.08
26761976--26762022	24	2.0	24	95	0	85	57	4	10	27	1.51
26765605--26765629	5	5.0	5	100	0	50	0	20	0	80	0.72
26769018--26769065	23	2.0	24	84	4	62	54	0	0	45	0.99
26771265--26771302	20	1.9	20	88	0	58	21	23	2	52	1.59
26772344--26772402	28	2.1	29	87	3	84	55	1	1	40	1.20
26772661--26772685	2	12.5	2	100	0	50	48	0	0	52	1.00
26790191--26790240	25	2.0	25	85	11	68	44	0	2	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26795775--26795818	22	2.0	23	86	13	65	34	9	15	40	1.79
26801222--26801283	26	2.3	27	88	2	90	27	16	8	48	1.74
26803820--26803862	23	1.9	23	85	4	61	34	20	2	41	1.65
26807791--26807830	6	6.8	6	85	5	55	2	0	50	47	1.14
26811498--26811560	21	3.2	21	69	26	57	63	7	0	28	1.22
26811691--26811835	23	6.2	24	80	13	169	68	18	3	8	1.30
26811691--26811835	47	3.1	46	79	14	163	68	18	3	8	1.30
26811694--26811807	12	9.7	12	75	3	106	69	19	3	7	1.28
26814623--26814667	20	2.1	22	88	8	67	62	0	2	35	1.08
26814891--26814943	26	2.0	26	81	0	61	30	18	9	41	1.82
26820208--26820238	15	2.1	15	93	0	53	51	6	3	38	1.44
26823591--26823619	15	1.9	15	100	0	58	6	6	3	82	0.93
26824561--26824621	5	11.8	5	91	5	63	77	0	6	16	0.98
26824553--26824629	6	12.8	6	82	14	63	77	0	5	16	0.94
26824554--26824629	26	3.0	26	79	16	61	77	0	5	17	0.94
26829401--26829451	26	2.0	26	96	0	93	17	7	11	62	1.51
26830131--26830161	13	2.5	13	94	5	55	41	0	0	58	0.98
26840050--26840167	59	2.0	60	83	1	148	26	23	13	36	1.92
26840186--26840369	92	2.0	90	82	4	217	37	17	19	25	1.93
26840231--26840409	93	1.9	92	80	7	202	40	16	18	25	1.90
26841884--26842105	81	2.8	81	82	4	263	28	29	19	22	1.98
26842173--26842267	28	3.4	28	73	12	88	41	0	4	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26842192--26842276	6	15.0	6	75	11	63	42	0	4	52	1.22
26842198--26842262	17	3.9	17	85	2	96	38	0	4	56	1.20
26842192--26842276	34	2.5	34	80	3	100	42	0	4	52	1.22
26842371--26842407	14	2.6	15	83	12	51	45	27	0	27	1.54
26842911--26842943	14	2.4	14	94	0	57	60	0	0	39	0.97
26843111--26843135	2	12.5	2	100	0	50	52	0	0	48	1.00
26843944--26844037	30	3.1	30	85	11	122	39	21	3	36	1.69
26843953--26844110	29	5.4	28	71	15	90	34	23	3	38	1.73
26843945--26844124	30	6.1	29	70	12	82	37	23	3	35	1.71
26844004--26844310	58	5.3	59	80	8	317	35	25	4	34	1.77
26844148--26844309	28	5.6	27	75	13	137	33	26	5	33	1.80
26843953--26844338	116	3.3	115	81	9	369	35	24	4	35	1.76
26850720--26850782	17	3.6	17	81	10	74	77	0	22	0	0.76
26850733--26850782	11	4.3	12	76	14	52	80	0	20	0	0.72
26850718--26850780	6	10.8	6	77	8	60	79	0	20	0	0.73
26851098--26851306	112	1.9	112	88	2	321	31	20	10	37	1.87
26851919--26853374	78	18.7	78	80	6	976	33	23	16	26	1.96
26851919--26853097	272	4.3	273	79	6	1057	33	23	16	26	1.96
26852073--26853397	350	3.8	350	82	5	1484	32	23	17	26	1.96
26855448--26855488	22	1.9	21	85	5	55	12	17	2	68	1.31
26860587--26860726	43	3.3	43	79	0	154	42	24	14	18	1.87
26862368--26862481	37	3.1	37	88	1	156	9	16	30	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26862457--26862502	21	2.2	21	92	0	74	6	10	39	43	1.66
26862413--26862541	59	2.2	58	83	1	159	10	14	33	41	1.79
26862472--26862578	37	2.9	37	83	2	135	11	15	33	39	1.83
26862509--26862636	58	2.2	58	87	5	179	10	18	32	38	1.86
26862546--26862599	21	2.6	21	90	0	81	9	20	31	38	1.84
26862376--26862673	95	3.1	95	81	2	355	10	17	32	39	1.83
26862567--26862693	37	3.4	37	83	0	146	11	20	33	34	1.88
26868018--26868090	21	3.7	21	65	29	61	6	16	32	43	1.74
26868021--26868369	37	9.4	37	88	0	464	10	18	31	39	1.85
26868095--26868164	21	3.6	21	68	18	60	12	20	28	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143