genome.fa.s11.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  98  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30310709--30310755	23	2.0	23	88	8	69	53	4	0	42	1.20
30310677--30310787	52	2.1	52	86	0	150	52	4	1	41	1.32
30310677--30310787	35	3.2	34	80	5	116	52	4	1	41	1.32
30314669--30314784	62	1.9	61	92	1	196	57	11	19	11	1.63
30315888--30316300	111	3.7	112	90	1	650	30	22	10	36	1.88
30316745--30317127	49	7.7	50	71	10	236	35	15	30	18	1.92
30316745--30317144	99	4.1	100	80	5	413	35	15	30	19	1.93
30316745--30317144	198	2.0	197	83	4	493	35	15	30	19	1.93
30317365--30318345	78	12.2	79	82	8	920	31	25	17	25	1.97
30317365--30318346	42	24.4	42	79	8	935	31	25	17	25	1.97
30317365--30318344	162	6.1	160	81	8	969	31	25	17	25	1.97
30317365--30318346	120	8.1	122	79	8	915	31	25	17	25	1.97
30322306--30322354	24	2.0	24	84	7	64	61	12	6	20	1.52
30326266--30326299	7	4.9	7	100	0	68	29	0	29	41	1.57
30329907--30329947	21	2.0	21	85	0	55	41	24	7	26	1.81
30331455--30331508	29	1.9	29	88	7	85	40	27	7	24	1.81
30339625--30339661	19	1.9	19	88	0	56	27	16	10	45	1.80
30341867--30341896	15	1.9	16	93	6	53	66	6	0	26	1.16
30342282--30342336	18	3.1	18	76	10	58	40	25	10	23	1.87
30349011--30349056	3	15.3	3	90	0	74	36	32	0	30	1.58
30369266--30369331	30	2.2	30	83	0	78	10	6	33	50	1.62
30371154--30371225	20	3.6	21	73	16	64	66	1	4	27	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30371179--30371225	20	2.3	20	86	13	78	68	0	4	27	1.08
30372364--30372425	31	2.0	32	84	9	83	43	0	3	53	1.17
30379045--30379117	10	7.1	10	70	14	51	30	2	4	63	1.27
30381259--30381284	8	3.2	8	100	0	52	23	0	0	76	0.78
30382734--30382776	11	4.1	11	79	8	54	55	16	2	25	1.53
30387365--30387444	31	2.6	32	86	7	112	26	16	12	45	1.83
30387319--30387499	90	2.0	90	87	0	263	23	16	12	46	1.81
30387647--30387837	62	3.1	61	75	14	137	53	11	11	23	1.69
30387691--30387837	58	2.5	61	79	7	160	54	10	10	23	1.67
30390387--30390616	30	7.8	29	78	6	187	36	22	2	38	1.68
30390373--30390611	59	4.1	56	75	13	194	36	21	2	38	1.69
30396561--30396606	17	2.7	17	79	0	56	39	2	6	52	1.40
30396916--30396972	31	2.0	28	83	13	71	49	0	8	42	1.34
30401904--30401943	3	13.3	3	100	0	80	67	0	0	32	0.91
30405891--30405931	21	1.9	22	85	14	59	31	7	14	46	1.72
30407512--30407609	51	1.9	51	95	0	178	54	6	1	38	1.32
30407522--30407600	24	3.2	24	66	16	61	55	7	1	35	1.36
30407529--30407634	51	2.1	50	82	8	126	56	6	3	33	1.43
30408284--30408384	43	2.3	43	87	0	148	24	6	12	55	1.62
30409238--30409270	17	1.9	17	88	11	50	84	3	9	3	0.82
30411179--30411221	11	3.9	11	81	0	50	18	27	27	25	1.98
30412405--30412471	12	5.4	13	71	20	54	38	1	2	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30419511--30419577	12	5.4	13	71	20	54	38	1	2	56	1.24
30421617--30421655	5	7.8	5	83	11	53	79	2	0	17	0.84
30425169--30425218	25	2.0	25	100	0	100	52	20	12	16	1.75
30426926--30427135	30	7.1	29	73	13	151	33	20	1	43	1.61
30426928--30427193	60	4.5	60	79	7	283	34	21	1	42	1.64
30426928--30427208	118	2.4	117	81	10	304	35	21	1	41	1.64
30427149--30427205	29	2.0	29	85	0	78	36	22	1	38	1.65
30439171--30439833	39	17.1	39	72	8	388	25	29	18	26	1.98
30439291--30439833	117	4.7	117	74	6	431	25	29	18	26	1.98
30441577--30441908	30	11.1	29	75	8	231	34	25	2	38	1.69
30441581--30441922	60	5.8	60	78	9	290	35	24	2	37	1.69
30441676--30441922	29	8.3	29	73	9	142	36	25	2	36	1.68
30446361--30446386	4	6.5	4	100	0	52	76	0	23	0	0.78
30452555--30452682	66	1.9	66	95	3	231	36	12	7	43	1.70
30453261--30453321	31	1.9	32	83	9	81	27	14	8	49	1.72
30453217--30453393	88	2.0	88	80	8	200	26	13	10	49	1.75
30453273--30453331	31	1.9	31	86	6	84	27	11	11	49	1.74
30453289--30453401	57	1.9	58	82	3	138	23	12	12	52	1.72
30460309--30460421	24	4.8	24	87	4	158	27	24	21	26	1.99
30460309--30460421	47	2.4	48	85	4	158	27	24	21	26	1.99
30460407--30460483	27	2.8	27	90	2	109	36	24	16	22	1.94
30470339--30470442	6	18.5	6	73	13	69	42	3	3	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30470342--30470440	17	5.9	17	78	2	103	39	4	4	52	1.39
30470340--30470441	34	3.1	33	80	8	118	41	3	3	50	1.39
30472308--30472371	30	2.1	31	82	8	78	31	21	1	45	1.62
30472328--30472488	59	2.7	58	81	7	175	32	21	4	40	1.74
30472328--30472488	58	2.7	59	82	7	177	32	21	4	40	1.74
30472386--30472459	29	2.6	28	75	16	71	32	16	5	45	1.70
30477341--30477402	23	2.7	23	85	5	81	74	3	19	3	1.10
30478432--30479199	49	15.7	48	69	15	312	38	18	25	17	1.93
30478442--30479205	98	7.8	99	86	4	928	38	18	25	17	1.93
30478442--30479498	196	5.5	196	83	5	1264	38	18	25	18	1.93
30479126--30479280	81	1.9	82	89	6	244	36	14	27	21	1.92
30479212--30479482	49	5.6	46	69	14	170	37	18	25	19	1.93
30479266--30479498	49	4.7	49	73	4	218	37	18	24	19	1.94
30479208--30479498	98	3.0	97	89	3	424	37	17	25	19	1.93
30479629--30479822	103	1.9	103	89	2	300	34	17	19	29	1.94
30479878--30480168	39	7.5	39	71	6	176	25	29	17	27	1.98
30479894--30480168	78	3.5	78	79	2	291	24	30	18	26	1.98
30480608--30480711	6	18.5	6	71	13	60	41	3	4	50	1.42
30480611--30480709	17	5.9	17	76	2	94	38	4	5	52	1.42
30480609--30480710	34	3.1	33	77	8	109	40	3	4	50	1.42
30480672--30480711	11	3.6	11	82	0	53	47	2	0	50	1.14
30482542--30482775	30	8.0	29	70	14	126	32	26	3	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30482612--30482771	30	5.5	28	73	10	142	33	26	2	38	1.70
30482570--30482802	59	4.0	59	88	3	330	31	25	3	39	1.71
30482608--30482861	117	2.2	118	80	6	293	32	23	4	39	1.76
30482851--30482906	29	2.0	28	85	3	76	30	28	7	33	1.84
30485898--30485970	26	2.9	25	78	6	85	31	17	31	19	1.95
30488990--30489086	6	16.2	6	71	11	74	38	1	3	57	1.21
30488990--30489086	18	5.4	17	89	7	131	38	1	3	57	1.21
30488974--30489081	12	9.2	12	73	9	62	36	0	3	59	1.22
30489026--30489093	17	4.3	15	74	20	50	35	0	7	57	1.27
30490897--30491147	30	8.5	30	77	6	172	38	21	1	37	1.65
30490897--30491161	89	3.0	87	83	4	307	37	22	1	38	1.65
30490897--30491160	60	4.5	59	79	7	223	37	22	1	38	1.65
30502513--30503452	209	4.5	209	90	1	1458	37	19	21	22	1.95
30504157--30504386	30	7.7	30	80	1	221	36	26	3	34	1.72
30504157--30504345	60	3.2	60	86	0	254	36	28	3	32	1.73
30504156--30504357	90	2.3	89	88	0	287	36	26	3	33	1.74
30504157--30504420	60	4.4	60	84	4	241	35	26	3	34	1.74
30504187--30504407	89	2.5	90	84	4	261	36	25	2	35	1.71
30509357--30509404	21	2.3	21	88	0	78	29	14	27	29	1.95
30515189--30515274	2	43.0	2	100	0	172	0	0	50	50	1.00
30515274--30515298	2	12.5	2	100	0	50	48	0	52	0	1.00
30518811--30518870	29	2.1	29	100	0	120	31	6	35	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30519630--30519704	24	3.2	24	78	3	98	41	12	12	34	1.79
30519601--30519705	47	2.2	47	94	0	183	43	13	11	31	1.79
30519601--30519705	23	4.5	24	73	3	97	43	13	11	31	1.79
30519716--30519759	22	2.0	22	86	8	63	72	9	0	18	1.10
30519795--30519848	12	4.6	12	80	13	67	50	14	14	20	1.78
30519807--30519854	24	2.0	24	95	0	87	47	16	14	20	1.82
30525372--30525557	90	2.1	90	83	4	232	27	25	12	34	1.92
30526798--30526830	14	2.4	14	94	0	57	39	21	3	36	1.69
30526902--30526945	21	2.1	22	87	8	65	31	2	22	43	1.66
30526950--30526995	20	2.2	22	88	7	69	19	4	32	43	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143