genome.fa.s11.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032255.1 Gossypioides kirkii chromosome KI_13
Parameters: 2 7 7 80 10 50 1000
Length:  42971368

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   

This is table  44  of  143  ( 17057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13793029--13793062	17	2.0	17	88	0	50	50	17	2	29	1.61
13795112--13795137	11	2.4	11	100	0	52	34	7	7	50	1.60
13795808--13795916	44	2.5	44	89	0	164	19	12	24	43	1.86
13802860--13802906	25	1.9	24	83	12	60	76	0	19	4	0.95
13806717--13806778	26	2.5	25	76	7	72	45	9	16	29	1.79
13814357--13814460	36	2.9	36	86	0	127	21	25	17	36	1.94
13821906--13821938	6	5.5	6	89	10	50	0	15	0	84	0.61
13821906--13821941	12	2.9	13	88	12	58	0	16	0	83	0.65
13822490--13822555	34	1.9	34	84	6	89	46	13	19	19	1.83
13849205--13849280	33	2.3	33	86	0	107	34	19	17	28	1.94
13849205--13849293	33	2.7	32	81	10	99	33	21	16	28	1.95
13854844--13854877	17	1.9	18	94	5	61	29	2	26	41	1.70
13857733--13857817	43	2.0	43	92	0	143	57	5	11	24	1.56
13870356--13870443	37	2.4	37	88	7	126	31	34	14	19	1.92
13873112--13873169	17	3.4	17	82	0	71	17	18	13	50	1.79
13874298--13874382	37	2.3	37	89	4	127	30	31	15	22	1.95
13874324--13874420	37	2.6	37	83	0	104	29	27	17	24	1.97
13885023--13885060	18	2.1	18	90	0	58	47	13	26	13	1.79
13887260--13887450	30	6.4	30	77	8	106	35	4	23	36	1.74
13887275--13887447	89	1.9	90	81	8	210	37	4	20	38	1.71
13888681--13888726	11	4.0	12	86	8	51	15	17	43	23	1.87
13889305--13889584	49	5.7	50	73	11	213	20	27	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13889305--13889682	49	7.7	49	71	11	200	20	26	15	36	1.93
13889305--13889765	98	4.7	98	81	4	473	20	26	16	36	1.94
13901927--13901966	21	2.0	21	85	5	55	50	0	7	42	1.30
13912505--13912557	21	2.5	21	74	17	56	39	32	1	26	1.67
13912545--13912606	28	2.2	28	83	13	83	43	35	1	19	1.61
13915304--13915377	36	2.0	37	86	2	105	18	14	22	43	1.87
13917850--13917915	27	2.3	27	87	10	89	34	12	21	31	1.90
13919872--13919905	16	2.2	15	89	5	50	70	0	2	26	1.01
13942456--13942505	25	2.0	25	100	0	100	24	16	32	28	1.96
13943818--13944173	123	2.9	122	88	6	523	37	10	9	42	1.71
13944107--13944326	106	2.1	106	86	2	298	41	8	9	40	1.67
13948287--13948329	14	3.1	14	86	0	68	20	13	13	51	1.76
13975699--13975742	23	2.0	22	86	4	61	38	0	15	45	1.47
14000313--14000361	24	2.0	25	92	4	82	18	24	20	36	1.94
14000337--14000481	43	3.3	43	83	0	182	25	27	19	27	1.99
14000337--14000507	43	4.0	43	82	0	171	27	28	16	26	1.97
14002923--14002966	22	2.0	23	90	4	72	50	15	9	25	1.74
14003423--14003478	17	3.2	17	66	14	51	30	0	8	60	1.27
14003422--14003478	18	3.2	18	70	5	62	29	0	8	61	1.26
14003549--14003959	41	10.1	41	84	3	456	22	30	16	31	1.95
14003936--14004040	39	2.7	40	86	1	140	23	21	14	40	1.90
14015326--14015373	21	2.3	22	78	10	55	66	6	18	8	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14017481--14017517	16	2.4	16	90	4	58	37	2	5	54	1.38
14024445--14024492	19	2.5	20	75	21	50	45	0	0	54	0.99
14032104--14032141	20	1.9	20	88	0	58	23	5	0	71	1.07
14056000--14056041	18	2.4	18	80	15	52	47	16	0	35	1.47
14058934--14059407	251	1.9	251	95	0	858	28	18	8	44	1.80
14060089--14060138	17	3.2	17	70	21	54	34	0	6	60	1.21
14060081--14060153	29	2.5	30	88	2	103	32	2	8	56	1.43
14060471--14060525	28	2.0	27	85	3	74	58	7	10	23	1.57
14060375--14060525	59	2.6	57	78	10	178	52	9	12	25	1.68
14068062--14068086	13	1.9	13	100	0	50	28	24	8	40	1.83
14084003--14084032	14	2.1	14	93	0	51	70	3	6	20	1.25
14092253--14092702	225	2.0	225	98	0	864	32	16	9	40	1.82
14097380--14097420	21	2.0	20	85	9	55	41	17	21	19	1.90
14110070--14110144	26	2.9	25	86	4	87	32	14	13	40	1.85
14113610--14113649	21	1.9	21	94	0	71	27	27	22	22	1.99
14147872--14148034	37	4.4	37	86	0	236	11	19	31	36	1.88
14155848--14155944	49	1.9	51	89	4	153	37	2	6	54	1.37
14155848--14155992	53	2.9	51	80	9	154	34	4	7	53	1.48
14156137--14156166	15	2.1	15	93	6	53	63	0	0	36	0.95
14156433--14156484	22	2.2	24	86	6	72	38	5	3	51	1.44
14156873--14156907	17	2.1	17	88	0	52	42	0	2	54	1.15
14162237--14162275	19	2.1	19	85	0	51	33	2	2	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14166577--14166724	71	2.0	72	93	3	253	43	11	14	30	1.81
14167161--14167279	30	4.0	31	80	7	131	28	17	26	27	1.98
14167162--14167282	60	2.0	59	83	1	152	27	18	26	28	1.98
14168967--14169131	50	3.3	49	85	8	208	33	3	6	56	1.41
14169327--14169854	82	6.6	83	74	16	345	28	11	14	46	1.79
14169527--14169680	73	2.1	73	86	2	211	31	10	12	44	1.77
14169600--14169854	85	3.0	84	85	4	354	28	10	15	44	1.80
14169759--14169934	76	2.3	77	79	3	194	29	9	14	47	1.75
14170689--14170730	17	2.5	17	92	0	66	26	0	42	30	1.55
14171455--14171575	30	4.1	30	78	2	136	28	18	27	26	1.98
14172968--14173440	41	11.5	41	82	2	511	30	24	21	24	1.99
14175202--14175356	41	3.8	39	77	5	139	36	18	25	20	1.95
14177144--14177186	12	3.5	12	76	17	52	41	9	4	44	1.57
14177137--14177186	25	2.0	25	100	0	100	44	8	8	40	1.63
14178523--14179300	389	2.0	388	94	0	1367	24	15	12	46	1.81
14180184--14180250	26	2.5	26	87	2	98	49	10	0	40	1.37
14180233--14180261	4	7.5	4	92	7	51	51	0	0	48	1.00
14180206--14180302	38	2.5	38	81	3	113	50	6	0	43	1.27
14180271--14180297	14	1.9	14	100	0	54	55	0	0	44	0.99
14180247--14180319	22	3.4	22	79	7	80	49	2	0	47	1.15
14180274--14180319	20	2.2	21	92	7	76	45	0	0	54	0.99
14180271--14180317	12	4.1	12	72	10	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14180300--14180522	34	6.2	34	66	20	123	48	9	0	40	1.40
14180426--14180467	20	2.2	18	91	8	66	40	0	0	59	0.97
14180287--14180586	148	2.0	150	95	1	541	47	10	0	42	1.40
14186691--14186883	51	3.8	51	88	0	287	30	21	13	34	1.92
14186648--14186883	102	2.3	102	87	2	332	30	22	13	34	1.92
14190974--14191282	43	7.3	43	80	6	335	24	17	29	27	1.97
14190974--14191259	125	2.3	123	81	6	315	25	17	30	26	1.98
14190993--14191301	167	1.8	168	82	2	397	25	19	28	26	1.99
14191319--14191370	21	2.5	21	100	0	104	17	19	30	32	1.95
14191858--14191973	42	2.8	43	80	5	139	31	24	22	21	1.98
14194333--14194376	17	2.6	18	85	10	65	36	0	4	59	1.18
14194339--14194424	11	7.7	11	69	18	54	43	2	2	52	1.26
14194369--14194405	17	2.2	17	95	0	65	37	2	5	54	1.38
14194342--14194407	6	11.7	6	76	12	50	39	1	3	56	1.24
14195870--14196097	30	7.6	30	93	0	366	37	24	2	35	1.69
14196073--14196185	29	3.9	28	71	19	90	27	27	7	37	1.85
14195870--14196208	60	5.7	57	81	9	301	34	24	4	36	1.76
14196049--14196267	59	3.7	59	82	4	194	31	25	6	36	1.82
14201636--14201681	14	3.2	14	81	3	56	80	2	10	6	0.98
14202963--14203241	100	2.8	100	88	2	400	38	20	24	16	1.93
14202940--14203274	100	3.4	100	82	6	385	40	22	21	14	1.90
14203127--14203399	149	1.8	148	94	1	483	39	22	21	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14203360--14203483	51	2.5	50	84	5	144	40	20	25	13	1.89
14203109--14203444	150	2.2	150	87	3	507	39	21	23	15	1.91
14203747--14203876	38	3.4	38	71	14	122	34	13	19	33	1.90
14203726--14203885	76	2.1	77	94	2	277	33	14	18	33	1.91
14203861--14204366	50	10.6	50	70	17	317	35	18	18	27	1.95
14204051--14204366	51	6.7	48	67	21	186	34	18	18	27	1.95
14203806--14204366	183	3.0	188	82	7	674	34	18	18	28	1.95
14203806--14204279	92	5.1	92	84	6	641	33	18	18	28	1.95
14204616--14204659	17	2.6	18	85	10	65	36	0	4	59	1.18
14204622--14204707	11	7.7	11	69	18	54	43	2	2	52	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143