genome.fa.s10.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  10  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2892088--2892141	12	4.7	12	73	15	51	53	1	0	44	1.11
2892116--2892173	20	2.8	20	73	21	57	56	0	0	43	0.99
2892116--2892166	18	2.6	18	82	14	57	58	0	0	41	0.98
2892821--2892871	18	2.7	19	72	24	54	29	0	0	70	0.87
2895472--2895496	12	2.1	12	100	0	50	40	24	0	36	1.55
2896261--2896366	53	2.0	52	94	1	185	29	13	7	50	1.69
2903964--2904002	12	3.1	12	82	13	51	56	0	0	43	0.99
2912144--2912196	21	2.6	21	85	8	65	22	26	7	43	1.80
2912215--2912292	21	3.8	20	73	19	61	24	26	8	39	1.85
2921932--2922009	38	2.0	39	90	7	124	51	25	2	20	1.60
2922094--2922145	9	5.8	9	86	0	77	25	7	28	38	1.83
2924493--2924662	61	2.8	60	90	2	268	28	17	25	27	1.98
2924624--2924690	29	2.3	29	92	0	107	25	20	26	26	1.99
2924563--2924746	90	2.0	91	88	1	271	28	17	25	28	1.98
2924503--2924816	152	2.1	150	86	2	423	28	17	25	28	1.98
2924659--2924833	61	2.8	62	85	0	235	30	16	25	27	1.96
2924493--2924873	213	1.8	210	81	4	478	29	17	25	27	1.97
2924652--2924914	60	4.3	60	81	3	267	30	16	25	28	1.97
2924984--2925009	11	2.4	11	100	0	52	57	34	7	0	1.27
2926066--2926107	3	14.0	3	100	0	84	33	0	0	66	0.92
2926419--2926452	4	8.5	4	100	0	68	50	23	0	26	1.50
2934201--2934252	25	2.0	27	85	7	72	51	0	1	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2936720--2936758	19	2.1	18	85	9	51	41	5	5	48	1.47
2936845--2936895	22	2.3	22	86	0	66	23	25	25	25	2.00
2948987--2949036	23	2.2	23	82	7	57	44	18	18	20	1.88
2961670--2961722	3	17.7	3	84	7	72	1	28	1	67	1.11
2961690--2961729	18	2.2	18	86	0	53	2	30	5	62	1.29
2962199--2962226	3	9.3	3	100	0	56	32	35	0	32	1.58
2962228--2962252	3	8.3	3	100	0	50	64	0	36	0	0.94
2963499--2963539	21	2.0	20	85	4	55	39	21	2	36	1.67
2972235--2972282	17	2.8	17	90	9	71	14	16	35	33	1.89
2978782--2978819	19	2.0	20	84	5	51	18	7	28	44	1.78
2980742--2980774	17	1.9	17	93	0	57	33	15	24	27	1.95
3000435--3000511	38	2.0	38	90	5	120	42	2	15	38	1.61
3006062--3006281	108	2.0	108	97	0	413	38	16	13	30	1.88
3019821--3020390	114	5.0	111	74	8	421	31	19	20	28	1.97
3020641--3020727	39	2.2	39	89	0	147	26	2	22	48	1.63
3020996--3021135	14	9.9	14	65	10	61	20	2	33	43	1.66
3022884--3022921	13	2.9	13	77	14	51	18	5	31	44	1.72
3023463--3023598	67	2.0	67	81	5	159	45	5	6	41	1.54
3023615--3023639	7	3.6	7	100	0	50	60	12	0	28	1.32
3023619--3023732	52	2.1	55	82	10	139	51	13	0	34	1.47
3023771--3024111	9	38.8	9	73	20	237	46	20	1	31	1.60
3023769--3024038	47	6.0	48	72	17	129	45	21	1	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3023939--3024118	16	11.9	16	76	14	129	50	20	0	28	1.53
3023771--3024118	25	13.3	25	71	18	162	46	20	1	31	1.60
3024069--3024106	12	3.2	12	96	0	67	47	15	2	34	1.60
3029958--3030183	43	5.3	43	89	1	310	25	17	29	27	1.98
3034299--3034362	6	10.3	6	83	12	58	73	0	3	23	0.97
3034314--3034364	3	17.3	3	80	11	61	70	0	1	27	0.98
3039490--3039534	12	4.0	12	77	16	60	20	0	46	33	1.51
3041233--3041319	30	3.1	29	82	12	110	44	6	22	25	1.77
3041231--3041318	25	3.1	30	82	12	114	43	6	23	26	1.79
3045678--3045951	30	9.1	30	97	0	503	43	6	23	26	1.78
3052493--3052579	40	2.2	40	81	4	95	27	16	20	35	1.94
3052511--3052649	41	3.4	40	84	6	172	24	15	26	33	1.95
3056381--3056487	49	2.2	49	84	0	133	27	15	28	28	1.96
3059943--3060042	40	2.5	40	82	6	105	25	16	22	37	1.93
3059973--3060093	40	3.0	41	85	2	163	23	16	28	31	1.96
3059976--3060106	41	3.2	41	79	10	153	22	16	27	33	1.95
3060365--3060461	42	2.3	42	94	0	167	36	9	27	26	1.87
3062544--3062576	14	2.2	16	89	10	52	69	0	12	18	1.18
3063675--3063733	24	2.5	24	86	5	84	16	30	20	32	1.95
3072191--3072237	15	3.1	15	93	0	85	12	8	19	59	1.58
3082031--3082206	36	4.7	36	73	8	118	20	19	25	34	1.96
3082031--3082291	76	3.5	76	79	6	223	21	20	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3084913--3084967	27	2.0	27	82	0	65	34	25	9	30	1.87
3084930--3085001	27	2.7	27	80	10	76	36	23	5	34	1.78
3085092--3085214	27	4.6	27	87	2	158	30	24	10	34	1.89
3085056--3085214	54	2.9	54	82	5	169	28	25	11	34	1.91
3088932--3089505	132	4.3	132	92	0	923	26	23	18	31	1.97
3089018--3089481	44	10.5	44	68	14	249	26	24	18	30	1.98
3089492--3089717	45	5.1	45	75	8	194	23	23	23	30	1.99
3089492--3089703	44	4.8	45	76	8	184	24	23	23	29	1.99
3089512--3089717	89	2.3	89	87	1	288	24	22	24	29	1.99
3090938--3090982	10	4.8	10	78	10	51	2	17	0	80	0.82
3090935--3090981	17	2.8	16	87	9	58	2	17	0	80	0.80
3095622--3095655	16	2.2	16	89	5	52	35	5	11	47	1.65
3096480--3096524	22	2.0	22	100	0	90	26	55	8	8	1.60
3112159--3112275	58	2.0	58	100	0	234	29	18	18	32	1.95
3117682--3117743	29	2.1	30	87	3	90	51	11	11	25	1.71
3122037--3122063	4	6.8	4	100	0	54	48	0	25	25	1.52
3124617--3124656	20	2.0	21	90	5	64	55	0	25	20	1.44
3124643--3124686	23	1.9	23	95	0	79	40	0	22	36	1.54
3131189--3131228	21	1.9	21	90	10	64	50	25	2	22	1.62
3143585--3143762	40	4.4	40	82	1	214	33	23	19	24	1.97
3143585--3143748	80	2.0	80	89	2	249	34	21	19	24	1.97
3153422--3153496	36	2.1	35	85	2	96	17	24	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3156571--3156638	25	2.6	27	86	13	97	26	27	7	38	1.83
3161837--3161864	14	2.0	14	100	0	56	57	0	0	42	0.99
3161815--3161867	24	2.2	25	86	10	74	52	0	1	45	1.11
3162339--3162393	26	2.1	26	100	0	110	29	21	12	36	1.91
3174610--3174738	43	3.0	43	77	13	129	30	27	18	24	1.98
3175495--3175544	25	2.0	25	92	7	84	52	4	0	44	1.20
3175686--3175967	149	1.9	150	88	0	431	41	20	8	28	1.82
3176348--3176611	136	1.9	136	92	0	438	32	18	9	39	1.83
3178759--3178898	25	5.6	25	77	4	113	32	20	27	20	1.97
3178759--3178897	75	1.9	74	83	4	181	33	20	26	20	1.97
3179465--3179660	98	2.0	98	96	0	365	37	23	9	29	1.86
3180098--3180137	12	3.5	12	83	13	57	52	10	0	37	1.35
3180144--3180183	18	2.2	17	86	8	53	72	7	0	20	1.08
3180197--3180231	15	2.2	15	90	10	52	62	0	2	34	1.10
3180222--3180266	17	2.7	17	77	16	58	71	0	4	24	1.05
3184077--3184203	49	2.6	50	87	3	168	35	19	26	18	1.95
3184075--3184206	25	5.3	25	81	5	151	34	19	27	18	1.96
3189706--3189732	12	2.2	12	100	0	54	22	0	0	77	0.76
3189791--3189830	18	2.3	17	87	8	62	25	5	2	67	1.23
3193294--3193385	42	2.2	43	86	2	123	27	18	23	30	1.98
3193296--3193408	43	2.7	41	80	6	111	26	18	24	30	1.98
3203323--3203588	44	6.0	44	82	1	255	34	16	17	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3203323--3203588	88	3.0	87	79	1	298	34	16	17	31	1.93
3203744--3203860	44	2.7	44	83	0	135	33	15	21	29	1.94
3203836--3203901	33	2.0	33	93	0	114	36	16	25	21	1.94
3205125--3205163	6	6.5	6	87	0	60	20	2	12	64	1.40
3205104--3205163	18	3.2	18	79	11	68	21	5	10	63	1.44
3206978--3207043	19	3.5	19	73	8	71	36	0	3	60	1.12
3211025--3211210	94	2.0	94	97	1	354	60	3	12	23	1.47
3212130--3212170	21	1.9	22	85	5	57	48	2	4	43	1.37
3215282--3215354	38	1.9	38	83	5	94	31	13	8	46	1.73
3217430--3217477	10	4.8	10	82	10	62	60	0	6	33	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136