genome.fa.s10.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  120  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40758534--40758586	19	2.7	20	82	14	65	32	0	0	67	0.91
40778116--40778182	28	2.4	27	82	7	80	65	2	7	23	1.32
40781945--40782190	114	2.1	114	99	0	483	38	8	8	44	1.66
40782166--40782231	18	3.7	18	78	8	71	33	0	1	65	1.02
40782162--40782198	11	3.8	10	82	17	51	27	0	0	72	0.84
40782186--40782225	17	2.3	18	91	4	64	32	0	2	65	1.06
40783284--40783332	26	2.0	24	88	8	71	53	2	0	44	1.12
40783590--40783620	15	2.1	15	100	0	62	32	0	6	61	1.21
40814930--40815073	50	2.9	50	86	1	198	25	23	31	20	1.98
40822483--40822592	25	4.5	24	85	7	125	41	20	21	16	1.90
40822510--40822592	25	3.3	25	93	3	132	38	22	22	15	1.92
40827495--40827528	17	2.0	17	94	0	59	17	26	5	50	1.69
40828324--40828648	18	18.4	18	72	11	226	30	13	10	45	1.78
40828324--40828648	35	9.2	35	75	12	215	30	13	10	45	1.78
40828696--40828777	17	4.7	17	75	15	78	29	10	10	48	1.72
40829760--40829828	26	2.4	30	76	20	92	21	33	11	33	1.90
40829773--40829830	26	2.2	26	100	0	116	24	32	12	31	1.91
40842183--40842647	237	2.0	237	98	0	894	46	13	16	23	1.82
40842741--40842778	16	2.3	17	82	17	53	10	5	5	78	1.06
40844088--40844122	18	2.0	18	88	5	54	42	0	2	54	1.15
40851188--40851248	30	2.0	30	100	0	122	3	13	39	44	1.60
40851193--40851241	15	3.3	15	70	30	50	2	14	38	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40854122--40854275	42	3.6	42	86	0	191	22	23	38	16	1.93
40855524--40855663	66	2.1	66	81	7	169	40	17	26	15	1.89
40855659--40855751	21	4.4	21	86	0	123	34	17	44	4	1.68
40855989--40856220	43	5.4	43	75	8	168	24	17	30	27	1.97
40855988--40856220	86	2.7	85	80	5	220	24	17	30	27	1.97
40856206--40856391	86	2.2	86	89	0	273	32	32	18	16	1.93
40856206--40856391	43	4.3	42	81	5	212	32	32	18	16	1.93
40859260--40859327	34	2.0	35	82	8	86	42	2	2	51	1.32
40881161--40881273	46	2.5	46	90	5	180	27	25	14	32	1.94
40881250--40881297	15	3.3	14	77	8	51	20	31	6	41	1.77
40894411--40894514	32	3.3	32	70	8	106	42	5	18	33	1.74
40894386--40894535	61	2.5	61	97	0	282	38	4	22	34	1.73
40894386--40894589	29	6.8	29	72	9	151	36	3	25	34	1.73
40895315--40895363	21	2.3	21	85	0	71	6	20	30	42	1.76
40908987--40909020	15	2.3	15	90	5	52	67	5	0	26	1.13
40909259--40909328	22	3.2	22	78	15	74	35	2	28	32	1.72
40913215--40913257	21	2.0	21	90	0	68	83	4	11	0	0.78
40915312--40915359	22	2.3	21	80	20	57	43	14	22	18	1.87
40918901--40919216	41	7.8	41	87	3	401	20	21	28	30	1.98
40920591--40920636	21	2.1	22	84	4	58	28	8	13	50	1.70
40926496--40926808	43	7.3	42	87	2	358	20	19	32	26	1.97
40926833--40926874	22	1.9	22	95	0	75	40	28	21	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40931233--40931269	18	2.1	18	89	0	56	37	0	2	59	1.12
40935567--40935623	29	2.0	29	92	0	96	21	26	21	31	1.98
40937484--40937532	20	2.4	21	80	19	59	42	8	6	42	1.59
40941321--40941482	40	4.1	40	100	0	324	25	22	19	32	1.97
40941793--40941849	29	2.0	29	92	0	96	21	26	21	31	1.98
40946944--40946986	21	2.1	20	82	4	50	25	2	6	65	1.30
40948927--40948983	26	2.1	26	83	6	69	28	3	7	61	1.39
40951183--40951207	13	1.9	13	100	0	50	36	8	16	40	1.77
40955066--40955123	21	2.6	23	76	23	77	27	20	8	43	1.81
40955231--40955296	9	7.2	9	77	16	73	56	21	0	22	1.43
40955265--40955296	11	3.1	11	82	17	50	62	18	0	18	1.33
40987567--40987593	8	3.4	8	100	0	54	11	0	0	88	0.50
40994173--40994228	16	3.3	16	72	18	51	44	1	3	50	1.29
40998192--40998218	13	2.1	13	100	0	54	37	0	33	29	1.58
41002952--41003027	10	7.9	9	72	13	53	65	1	5	27	1.22
41002944--41002977	11	3.2	11	83	8	52	70	0	0	29	0.87
41003531--41003630	37	2.7	37	77	14	100	28	2	2	68	1.12
41003534--41003647	28	4.0	26	75	18	86	25	2	1	70	1.10
41003546--41003647	37	2.8	35	78	12	82	25	1	1	70	1.08
41008177--41008249	19	3.8	19	92	0	128	38	9	15	36	1.80
41008803--41008864	28	2.2	27	86	11	81	30	1	6	61	1.31
41009444--41009483	19	2.0	20	85	4	55	32	5	10	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41009724--41009918	98	2.0	98	89	0	300	30	9	22	37	1.85
41013500--41013724	112	2.0	113	99	0	443	29	5	11	53	1.59
41017302--41017390	25	3.5	24	76	13	81	31	20	25	22	1.98
41017248--41017398	24	6.1	25	67	19	84	35	19	25	19	1.96
41017653--41017710	27	2.1	27	100	0	116	27	15	18	37	1.92
41022554--41022601	23	2.1	22	81	11	53	58	4	10	27	1.49
41029618--41029751	26	5.3	26	71	11	93	18	25	23	32	1.97
41029733--41029780	24	2.0	24	83	0	60	18	22	22	35	1.96
41031378--41031425	24	2.0	24	100	0	96	33	20	25	20	1.97
41031636--41031702	26	2.6	26	83	2	91	32	22	25	19	1.97
41031752--41031892	65	2.2	65	86	0	192	32	20	23	23	1.98
41037831--41037871	21	2.0	21	95	0	73	39	24	17	19	1.92
41043893--41044037	71	2.0	71	94	0	254	33	18	18	29	1.95
41045750--41045819	5	14.2	5	83	8	90	35	0	1	62	1.04
41054017--41054046	2	15.0	2	100	0	60	50	0	0	50	1.00
41059166--41059190	4	6.2	4	100	0	50	76	0	0	24	0.80
41072769--41072817	23	2.1	23	85	7	64	44	2	2	51	1.24
41081715--41081786	35	2.2	33	82	12	85	33	15	33	18	1.92
41081858--41081956	39	2.5	41	86	5	148	37	3	1	58	1.20
41081908--41081949	11	3.8	11	78	9	50	38	2	0	59	1.10
41081899--41081959	31	2.0	31	87	6	88	39	1	0	59	1.08
41082917--41082988	35	2.2	33	82	12	85	33	15	33	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41086244--41086329	20	4.3	20	78	0	73	41	15	6	36	1.74
41086244--41086353	40	2.7	39	77	5	112	41	13	6	38	1.70
41086281--41086348	20	3.4	20	80	8	75	44	16	4	35	1.67
41086445--41086592	20	7.2	20	72	11	93	41	11	8	38	1.71
41086500--41086537	12	3.2	12	85	11	51	47	15	7	28	1.74
41086527--41086692	40	4.1	40	80	6	140	40	11	6	40	1.67
41086548--41086652	20	5.2	20	74	4	95	38	11	5	44	1.64
41086536--41086692	60	2.6	59	76	7	156	40	10	6	42	1.65
41086534--41086705	20	8.6	20	69	11	66	40	11	6	41	1.67
41086638--41086699	21	3.0	21	76	2	63	43	11	8	37	1.70
41086714--41086762	20	2.5	20	79	0	53	38	12	6	42	1.67
41086805--41086943	20	7.1	20	67	8	70	43	15	6	35	1.72
41087169--41087298	20	6.4	20	75	10	102	43	13	8	34	1.75
41094389--41094447	30	2.0	30	90	6	93	59	0	1	38	1.08
41094389--41094440	10	5.1	10	75	13	52	55	0	1	42	1.10
41098971--41099023	21	2.3	23	84	9	65	52	1	0	45	1.11
41111985--41112017	13	2.4	14	90	5	50	57	0	6	36	1.23
41114689--41114901	106	2.0	107	99	0	419	27	2	16	53	1.57
41124516--41124714	98	2.0	100	92	3	332	22	22	9	45	1.80
41128499--41128537	15	2.5	15	87	4	51	41	0	2	56	1.13
41128489--41128535	16	2.7	18	78	18	55	44	0	2	53	1.12
41128868--41128981	51	2.2	52	82	3	133	33	14	8	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41128901--41129000	52	1.9	51	83	2	128	34	14	8	44	1.74
41140689--41140746	29	2.0	29	93	0	98	17	34	15	32	1.91
41144783--41144865	18	4.3	18	66	24	53	27	8	2	61	1.38
41149259--41149303	20	2.2	20	88	0	63	35	2	4	57	1.31
41149277--41149329	12	4.4	12	81	9	63	41	7	0	50	1.30
41150956--41150997	23	1.9	21	90	9	66	66	2	4	26	1.23
41150955--41151002	21	2.3	20	83	16	62	68	4	4	22	1.24
41159401--41159433	17	2.1	16	88	11	50	42	24	0	33	1.55
41165072--41165110	16	2.3	16	86	8	51	51	5	0	43	1.24
41165701--41165751	13	3.8	13	75	25	52	60	0	1	37	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136