genome.fa.s10.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  43  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14132584--14132774	50	3.8	50	69	2	159	26	20	25	27	1.99
14132934--14133096	45	3.6	45	80	4	168	31	21	23	23	1.98
14134585--14134737	48	3.2	48	75	18	181	38	2	3	55	1.30
14135021--14135060	13	2.9	14	82	17	57	20	5	7	67	1.34
14135071--14135100	15	2.0	15	93	0	51	16	0	16	66	1.25
14135636--14135693	28	2.1	28	96	0	107	39	17	13	29	1.88
14144305--14144402	27	3.6	27	81	0	106	26	24	11	37	1.89
14157012--14157128	50	2.3	50	83	2	137	27	22	28	22	1.99
14157392--14157430	20	2.0	20	90	10	62	56	5	23	15	1.59
14164661--14164790	50	2.6	50	83	0	152	27	22	27	22	1.99
14167262--14167352	30	3.0	30	81	1	101	34	17	14	34	1.90
14176359--14176427	28	2.5	28	95	0	120	23	5	11	59	1.53
14176776--14176809	3	11.7	3	87	6	52	29	2	0	67	1.05
14197726--14197781	24	2.3	25	81	6	69	23	17	16	42	1.88
14197786--14197833	25	1.9	25	87	8	71	22	25	16	35	1.95
14205084--14205120	15	2.4	16	90	4	58	29	5	10	54	1.57
14206939--14207082	72	2.0	72	98	0	279	33	6	15	44	1.72
14209472--14209503	15	2.1	16	88	11	50	18	6	6	68	1.32
14216533--14216620	46	1.9	46	86	4	124	38	19	20	21	1.93
14216844--14216949	31	3.4	31	77	12	108	39	18	19	21	1.92
14216952--14217002	26	2.0	26	96	0	93	35	25	23	15	1.94
14217128--14217183	24	2.3	24	87	0	76	46	25	3	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14217220--14217645	27	15.6	27	74	5	284	22	20	20	37	1.95
14220855--14220902	20	2.4	20	85	0	60	27	25	8	39	1.84
14223522--14223559	15	2.6	15	91	4	60	71	0	21	7	1.11
14230886--14230925	19	2.1	19	86	9	55	60	7	0	32	1.25
14232833--14232928	20	4.8	20	76	10	81	40	23	27	8	1.83
14235764--14235812	22	2.2	22	82	7	55	44	2	8	44	1.45
14241901--14242005	27	3.9	27	91	2	149	43	19	17	20	1.88
14241901--14242005	54	1.9	54	90	3	167	43	19	17	20	1.88
14241901--14242031	27	4.9	26	85	4	145	42	19	16	22	1.89
14250028--14250134	40	2.7	40	82	0	133	37	19	18	24	1.94
14250037--14250157	20	6.1	20	68	0	71	38	21	19	20	1.94
14250050--14250218	60	2.8	60	86	0	239	39	18	17	24	1.92
14297441--14297510	9	7.3	9	76	20	54	4	21	1	72	1.09
14301143--14301180	18	2.1	18	100	0	76	26	10	34	28	1.90
14305247--14305316	30	2.4	30	77	15	74	64	4	1	30	1.21
14305297--14305373	25	3.0	27	80	14	83	70	5	1	23	1.15
14305967--14306012	24	1.9	24	81	0	56	69	13	6	10	1.35
14312750--14312809	22	2.6	21	79	12	57	38	15	15	31	1.88
14313311--14313421	42	2.6	42	86	1	159	15	36	23	24	1.93
14315846--14315875	15	1.9	16	93	6	53	23	13	16	46	1.82
14326882--14327090	53	4.0	53	83	6	250	35	12	23	28	1.91
14347477--14347551	21	3.6	21	94	1	125	41	16	22	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14348815--14348843	14	2.0	15	93	6	51	27	0	20	51	1.47
14349813--14349940	43	3.0	42	82	8	150	25	18	26	28	1.98
14355289--14355344	29	2.0	28	82	3	67	37	10	5	46	1.62
14360149--14360184	17	2.1	18	94	5	65	16	5	13	63	1.47
14361401--14361436	17	2.1	17	94	0	63	36	5	2	55	1.38
14364672--14364725	16	3.4	16	73	0	54	29	22	5	42	1.76
14365322--14365361	20	2.0	20	85	4	55	52	7	0	40	1.30
14372237--14372272	15	2.4	15	95	0	63	30	13	0	55	1.39
14372552--14372597	24	1.9	24	90	0	74	36	2	4	56	1.31
14374083--14374121	20	2.0	20	90	5	62	64	5	0	30	1.15
14375468--14375509	22	1.9	22	90	0	66	52	0	4	42	1.22
14375885--14375909	5	5.0	5	100	0	50	20	40	40	0	1.52
14385249--14385296	15	3.3	14	80	8	60	52	10	0	37	1.36
14385988--14386076	39	2.4	36	78	10	97	59	23	5	11	1.52
14387908--14388378	169	2.7	178	78	9	411	45	7	14	32	1.72
14390568--14390624	19	2.8	20	84	7	71	40	5	1	52	1.34
14395948--14396111	39	4.2	39	84	0	220	37	17	29	16	1.91
14400913--14400966	26	2.1	26	100	0	108	42	3	11	42	1.58
14404570--14404607	19	2.0	19	100	0	76	36	10	21	31	1.87
14412357--14412422	32	2.1	32	97	0	123	37	19	22	19	1.94
14420348--14420580	118	2.0	118	91	0	376	40	8	15	35	1.77
14423063--14423101	5	7.8	5	82	0	51	0	30	2	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14423059--14423102	20	2.2	20	91	0	70	0	29	2	68	1.02
14423862--14423968	28	3.8	28	86	0	133	22	19	23	34	1.96
14425280--14425340	27	2.3	27	77	5	70	24	32	13	29	1.93
14444872--14444917	20	2.3	20	78	14	51	71	6	4	17	1.24
14446814--14446868	26	2.3	22	77	20	56	58	1	0	40	1.09
14452576--14452609	17	1.9	17	94	5	59	47	0	0	52	1.00
14452608--14452646	16	2.4	16	86	0	51	46	2	10	41	1.51
14452720--14452762	9	5.0	9	88	11	72	32	0	11	55	1.36
14452717--14452762	16	2.8	16	86	6	65	34	0	10	54	1.36
14452720--14452768	25	2.0	25	95	0	89	32	2	10	55	1.45
14452717--14452754	16	2.4	16	95	0	67	34	0	10	55	1.34
14453353--14453484	64	2.1	64	95	0	237	40	9	10	39	1.73
14453526--14453559	12	2.9	12	91	4	52	70	0	0	29	0.87
14454713--14454745	17	1.9	17	88	11	50	51	27	9	12	1.69
14466985--14467035	23	2.2	23	78	0	57	17	13	23	45	1.84
14467039--14467090	23	2.3	23	93	0	86	15	9	25	50	1.74
14476196--14476271	35	2.2	35	83	4	91	30	22	22	25	1.99
14487940--14487982	16	2.7	16	89	7	61	58	4	0	37	1.19
14503596--14503712	49	2.4	48	71	5	110	17	23	21	36	1.94
14503674--14503785	25	4.5	26	70	16	78	21	21	19	37	1.94
14505935--14505960	12	2.2	12	100	0	52	34	7	15	42	1.75
14505965--14506009	21	2.0	23	87	8	67	35	4	13	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14506309--14506347	3	13.0	3	88	0	60	30	2	0	66	1.05
14509998--14510079	6	13.2	6	73	14	60	4	19	1	74	1.07
14509987--14510055	12	5.8	12	77	13	52	4	17	1	76	1.02
14510380--14510430	23	2.2	23	89	0	75	43	21	7	27	1.80
14512699--14512979	50	5.6	50	81	2	287	28	22	28	20	1.99
14514468--14514518	23	2.2	23	92	0	84	41	21	9	27	1.84
14519576--14519616	20	2.0	20	85	0	55	36	12	24	26	1.91
14521598--14521640	19	2.3	19	88	4	61	37	11	27	23	1.89
14523735--14523787	17	3.1	17	72	0	52	16	11	28	43	1.83
14523773--14523856	17	4.9	17	76	0	78	22	11	21	44	1.85
14523851--14523974	34	3.6	34	72	4	115	28	11	25	35	1.90
14523844--14523997	68	2.3	68	87	0	227	27	11	23	37	1.89
14523844--14523997	34	4.5	34	68	8	98	27	11	23	37	1.89
14524147--14524199	26	2.0	26	85	7	72	26	15	22	35	1.93
14524390--14524466	27	2.9	27	98	0	145	44	16	19	19	1.87
14527507--14527535	14	2.1	14	100	0	58	31	13	34	20	1.92
14528446--14528470	12	2.1	12	100	0	50	16	24	0	60	1.36
14530266--14530538	136	2.0	136	96	0	501	32	21	19	26	1.97
14534861--14534994	54	2.5	54	83	2	171	34	26	17	21	1.95
14536922--14536957	18	2.0	18	94	0	63	30	5	11	52	1.59
14551250--14551361	56	2.0	56	100	0	224	33	19	17	28	1.95
14564307--14564347	6	6.7	6	88	5	55	0	0	21	78	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14564307--14564347	19	2.2	18	86	4	55	0	0	21	78	0.76
14576290--14577018	363	2.0	362	92	0	1206	40	18	22	18	1.92
14578979--14579031	26	2.0	26	89	7	81	18	22	33	24	1.97
14579008--14579159	42	3.6	43	75	10	152	23	19	24	32	1.97
14582566--14582632	34	2.0	34	82	8	84	29	23	25	20	1.99
14585329--14585416	20	4.3	20	77	10	81	35	1	6	56	1.33
14592546--14592581	17	2.2	17	90	5	56	11	19	5	63	1.46
14595228--14595308	34	2.4	34	95	0	144	27	23	20	28	1.99
14595250--14595315	34	2.1	30	81	15	73	30	19	21	28	1.98
14595790--14595825	17	2.1	17	89	5	54	19	44	25	11	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136