genome.fa.s10.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  96  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32173263--32173321	11	5.3	11	73	13	50	11	0	11	76	1.03
32173661--32173685	12	2.1	12	100	0	50	8	24	44	24	1.80
32178098--32178136	12	3.2	12	88	3	51	64	5	10	20	1.44
32180219--32180243	12	2.1	12	100	0	50	48	8	0	44	1.32
32180607--32180662	11	5.3	11	77	14	64	39	1	0	58	1.08
32180595--32180693	30	3.3	30	87	4	128	36	2	0	61	1.07
32180788--32180845	30	2.0	30	93	3	100	20	20	31	27	1.98
32182873--32182919	20	2.3	20	82	10	60	12	8	2	76	1.09
32182889--32182926	10	3.4	11	85	14	51	13	7	0	78	0.94
32183781--32183845	21	3.1	21	73	16	64	38	7	0	53	1.30
32187123--32187175	3	18.0	3	96	3	99	66	0	0	33	0.92
32188198--32188235	18	2.1	18	95	0	67	39	28	13	18	1.88
32190973--32191004	14	2.3	15	89	10	50	15	18	0	65	1.27
32202163--32202198	19	1.9	19	88	5	56	47	0	2	50	1.15
32203682--32203743	28	2.2	28	88	5	90	30	12	12	43	1.81
32203704--32203743	15	2.9	13	79	13	53	27	12	12	47	1.77
32205531--32205574	21	2.1	21	95	0	79	47	13	9	29	1.74
32209601--32209660	26	2.2	27	85	8	77	41	8	1	48	1.43
32210545--32210578	16	2.1	16	100	0	68	44	11	17	26	1.83
32216056--32216329	136	2.0	137	99	0	541	49	6	5	38	1.51
32217868--32217936	24	2.9	24	80	8	70	50	5	5	37	1.50
32218021--32218062	9	4.8	9	82	14	52	59	2	7	30	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32224723--32224763	16	2.5	17	80	15	50	12	17	4	65	1.42
32232225--32232294	34	2.1	34	100	0	140	40	22	10	27	1.86
32235718--32235756	20	2.0	20	89	0	60	58	5	2	33	1.33
32235719--32235764	20	2.4	19	81	3	56	60	6	2	30	1.34
32238183--32238233	26	1.9	26	84	4	66	41	9	0	49	1.36
32249113--32249145	16	2.0	17	88	5	50	36	0	6	57	1.23
32259815--32259860	14	3.5	13	85	11	58	17	0	2	80	0.81
32260666--32260711	3	15.3	3	100	0	92	32	0	0	67	0.91
32260774--32260818	23	2.0	23	82	8	56	20	11	6	62	1.50
32266884--32266929	24	2.0	23	86	4	65	28	4	4	63	1.33
32287199--32287411	89	2.4	87	75	6	214	38	10	26	23	1.88
32288281--32288320	7	5.6	7	88	5	53	22	0	30	47	1.52
32288281--32288326	14	3.2	14	78	6	56	21	0	30	47	1.51
32288279--32288339	29	2.1	29	87	0	86	19	0	36	44	1.51
32288569--32288642	37	2.0	36	89	7	112	63	0	4	32	1.13
32291616--32291731	11	10.8	11	73	15	100	43	2	31	22	1.67
32291600--32291699	51	2.0	51	90	4	157	45	3	28	24	1.68
32292133--32292158	2	13.0	2	100	0	52	50	0	0	50	1.00
32294961--32294992	4	8.0	4	100	0	64	25	0	0	75	0.81
32300877--32300907	9	3.4	9	90	0	53	25	12	22	38	1.90
32300962--32301007	9	5.1	9	94	0	83	45	13	10	30	1.77
32305023--32305062	3	13.3	3	94	0	71	32	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32307551--32307810	121	2.2	121	98	0	504	42	0	4	52	1.26
32307844--32307897	16	3.4	16	86	0	72	27	33	3	35	1.75
32308037--32308095	26	2.3	26	83	11	70	33	0	8	57	1.29
32308056--32308105	26	1.9	26	83	0	64	32	4	8	56	1.47
32312465--32312544	3	26.7	3	100	0	160	66	0	0	33	0.92
32312592--32312633	21	2.0	20	86	13	59	69	0	16	14	1.20
32324538--32324601	33	1.9	33	100	0	128	31	18	14	35	1.91
32328599--32328640	7	6.3	7	79	20	54	26	0	0	73	0.83
32328598--32328640	10	3.9	11	77	22	54	25	0	0	74	0.82
32328595--32328636	22	1.9	22	90	9	68	26	0	0	73	0.83
32334292--32334339	22	2.2	22	85	7	62	37	10	6	45	1.64
32334454--32334512	31	1.9	31	86	6	84	42	11	13	32	1.81
32335200--32335261	28	2.2	28	85	5	81	27	1	3	67	1.15
32335200--32335261	29	2.1	29	88	5	90	27	1	3	67	1.15
32338674--32338715	22	1.9	23	85	9	61	54	11	7	26	1.62
32338627--32338832	83	2.5	83	92	2	335	50	16	10	21	1.75
32339047--32339110	12	5.4	12	77	7	69	53	25	9	12	1.68
32339054--32339110	11	5.0	11	82	6	69	54	21	10	14	1.69
32339054--32339106	23	2.3	23	93	0	88	54	18	11	15	1.70
32339227--32339316	23	3.8	23	76	11	101	44	1	33	21	1.59
32339470--32339689	115	1.9	115	85	1	307	39	20	17	22	1.92
32339585--32339842	75	3.4	75	89	5	378	41	18	17	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32339750--32340006	113	2.3	114	83	4	338	42	18	14	24	1.87
32340333--32340586	7	35.7	7	70	11	61	45	31	1	20	1.63
32340471--32340514	22	2.0	22	90	0	70	38	31	6	22	1.81
32340487--32340586	8	13.2	8	74	12	61	40	36	1	23	1.61
32340487--32340586	15	6.7	15	75	7	87	40	36	1	23	1.61
32340609--32340651	22	2.0	22	86	9	61	41	37	4	16	1.69
32341032--32341060	15	1.9	15	100	0	58	31	20	13	34	1.92
32341914--32341947	17	1.9	17	88	5	50	41	0	5	52	1.25
32343448--32343510	26	2.4	26	83	0	72	44	11	12	31	1.78
32348642--32348891	83	3.0	82	93	1	430	29	12	12	45	1.79
32349485--32349532	17	2.9	17	90	3	71	27	2	20	50	1.60
32349705--32349944	125	1.9	128	97	2	459	42	7	23	26	1.81
32350751--32350840	46	2.0	46	93	0	153	33	11	30	25	1.90
32352695--32352831	46	3.0	46	84	0	157	38	8	24	28	1.85
32360006--32360290	145	2.0	145	96	0	525	34	10	21	33	1.88
32361963--32362011	17	2.9	17	84	3	64	30	2	18	48	1.59
32365490--32365517	13	2.2	13	100	0	56	21	25	7	46	1.76
32367019--32367179	42	3.8	42	78	8	148	31	26	16	25	1.96
32388869--32388901	16	1.9	18	88	11	52	12	6	0	81	0.85
32389932--32390007	33	2.3	33	86	0	107	38	2	3	55	1.33
32394453--32394480	5	5.6	5	100	0	56	42	17	17	21	1.89
32395126--32395162	9	4.1	9	85	0	56	32	10	10	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32402554--32402684	41	3.2	40	81	7	136	27	15	25	31	1.96
32406213--32406267	26	2.1	26	96	0	101	20	50	21	7	1.71
32408568--32408625	21	2.7	23	74	15	61	39	6	0	53	1.28
32409292--32409316	12	2.1	12	100	0	50	32	8	16	44	1.76
32418764--32418833	27	2.6	27	86	6	88	51	2	10	35	1.50
32419081--32419105	13	1.9	13	100	0	50	32	0	4	64	1.12
32419094--32419297	99	2.0	101	84	8	263	45	4	5	45	1.46
32422679--32422727	24	2.0	24	100	0	98	36	12	20	30	1.89
32423921--32423966	21	2.2	21	84	0	56	21	17	8	52	1.71
32427109--32427146	16	2.5	16	87	8	53	31	5	18	44	1.72
32429674--32429862	91	2.1	88	87	4	263	31	12	23	32	1.92
32432562--32432589	13	2.2	13	100	0	56	46	21	0	32	1.52
32433227--32433394	36	4.6	36	71	8	106	30	23	23	22	1.99
32433267--32433578	76	4.1	76	79	0	318	32	24	19	23	1.98
32435973--32436033	29	2.1	29	87	9	88	27	21	18	32	1.96
32436061--32436188	61	2.1	61	88	0	184	26	26	16	30	1.97
32436105--32436215	29	3.8	29	74	7	91	26	26	17	30	1.97
32436080--32436202	29	4.1	29	71	8	86	26	26	18	28	1.98
32437428--32437453	2	13.0	2	100	0	52	50	0	0	50	1.00
32437694--32437732	16	2.4	16	83	8	53	20	10	15	53	1.70
32438762--32439187	184	2.3	184	87	1	611	41	9	7	42	1.65
32439130--32439186	26	2.1	27	83	3	71	57	0	1	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32453936--32454273	168	2.0	169	99	0	669	35	14	6	44	1.71
32460741--32460795	27	2.0	27	82	6	67	40	3	0	56	1.17
32463539--32463569	2	16.0	2	93	6	55	48	0	0	51	1.00
32463487--32463573	41	2.2	41	82	12	101	51	1	10	36	1.44
32463864--32463897	17	2.0	17	88	0	50	73	2	14	8	1.19
32465814--32466135	133	2.4	134	88	1	486	26	23	21	28	1.99
32471736--32471779	18	2.6	17	86	10	63	45	2	11	40	1.53
32473693--32473754	28	2.3	27	82	2	70	45	8	11	35	1.70
32474020--32474053	17	2.0	17	88	0	50	73	2	14	8	1.19
32476574--32477424	3	283.7	3	100	0	1702	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136