genome.fa.s10.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  125  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42649615--42649815	90	2.2	90	97	0	375	19	20	20	39	1.93
42649615--42649820	45	4.6	45	88	0	304	19	19	20	39	1.92
42653446--42653497	24	2.2	24	89	0	77	55	9	1	32	1.43
42660244--42660274	8	3.9	8	100	0	62	38	0	0	61	0.96
42661749--42661803	19	3.1	18	80	19	55	30	3	0	65	1.10
42664671--42664708	6	6.3	6	100	0	76	34	31	0	34	1.58
42666317--42666415	51	1.9	51	97	0	189	39	13	19	28	1.89
42670362--42670409	21	2.3	21	78	7	53	18	6	2	72	1.15
42671566--42671595	13	2.3	13	94	0	51	60	0	0	40	0.97
42678999--42679034	19	1.9	19	88	5	56	72	0	0	27	0.85
42679003--42679051	11	4.5	11	82	5	55	73	4	0	22	1.00
42679001--42679053	22	2.3	23	81	12	65	71	3	0	24	1.02
42688294--42688350	22	2.6	22	83	8	64	35	3	1	59	1.25
42689023--42689080	23	2.6	22	81	10	73	15	13	17	53	1.73
42699002--42699054	23	2.4	22	84	6	72	18	9	13	58	1.61
42699465--42699499	5	7.0	5	100	0	70	40	0	0	60	0.97
42714660--42714699	14	2.9	14	84	0	53	42	17	7	32	1.77
42714625--42714691	34	1.9	35	84	3	91	46	10	8	34	1.70
42715152--42715254	41	2.5	40	84	1	143	25	19	24	31	1.98
42728820--42728850	15	2.1	15	100	0	62	29	19	19	32	1.96
42739255--42739744	243	2.0	244	99	0	973	49	8	6	35	1.59
42756846--42757184	86	3.7	87	81	10	383	36	6	12	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42756963--42757157	96	2.0	99	87	4	288	34	6	12	46	1.68
42757100--42757303	71	2.8	75	82	6	263	34	6	12	46	1.67
42764941--42765045	4	25.8	4	73	19	60	71	0	28	0	0.86
42764948--42765042	10	9.3	10	76	11	68	71	0	28	0	0.86
42764934--42765041	33	3.1	33	73	20	94	70	0	29	0	0.88
42764932--42765042	43	2.6	43	85	5	145	69	0	30	0	0.89
42764944--42765044	14	7.1	14	78	4	76	72	0	27	0	0.85
42765373--42765846	158	3.0	152	79	12	526	50	6	10	32	1.63
42767908--42767977	10	6.5	11	77	12	65	52	0	2	44	1.15
42767882--42767994	43	2.7	42	84	10	160	58	0	1	39	1.09
42767920--42767985	32	2.1	31	91	5	107	59	0	1	39	1.07
42767960--42768006	17	2.8	17	83	0	58	68	0	0	31	0.90
42767973--42768006	9	3.9	9	88	7	52	76	0	0	23	0.79
42768188--42768310	59	2.1	59	98	0	237	31	32	17	18	1.94
42776280--42776304	3	8.3	3	100	0	50	0	32	0	68	0.90
42781154--42781204	15	3.5	15	69	15	52	27	3	9	58	1.47
42782121--42782169	19	2.5	19	80	3	53	61	0	4	34	1.15
42784853--42784910	22	2.8	22	79	7	59	17	15	0	67	1.24
42798101--42798162	21	3.0	20	79	11	63	43	1	0	54	1.09
42798905--42798929	2	12.5	2	100	0	50	52	0	0	48	1.00
42805460--42805494	17	2.1	17	100	0	70	54	5	17	22	1.64
42812845--42812999	69	2.2	69	84	6	188	31	16	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42823091--42823337	50	4.8	50	82	4	246	23	28	21	26	1.99
42823674--42823731	30	1.9	30	82	6	73	32	24	3	39	1.72
42834942--42834988	14	3.4	14	77	14	53	76	2	2	19	0.99
42836620--42836652	17	1.9	17	100	0	66	24	0	18	57	1.40
42837885--42838023	46	3.0	46	94	0	242	34	8	26	30	1.86
42843503--42843536	13	2.6	13	90	9	52	44	0	2	52	1.16
42847648--42847734	24	3.6	24	73	17	72	24	22	21	31	1.99
42850402--42850456	28	2.0	29	89	7	87	49	0	1	49	1.11
42869441--42869602	91	1.8	86	89	6	252	35	7	12	45	1.70
42876823--42877001	25	7.2	25	71	13	75	18	27	20	34	1.96
42876881--42877001	24	5.0	23	73	14	73	16	28	22	33	1.95
42879275--42879346	28	2.5	28	77	6	83	30	20	20	27	1.98
42879457--42879527	26	2.8	25	82	6	90	40	21	19	18	1.91
42879685--42879755	27	2.6	27	84	0	79	26	18	15	39	1.90
42879735--42880148	27	15.3	27	82	1	380	20	14	18	45	1.85
42879735--42880153	81	5.2	81	81	1	444	20	15	18	45	1.85
42884083--42884240	79	2.0	79	98	0	307	12	17	21	48	1.80
42906319--42907724	703	2.0	703	99	0	2780	36	15	17	30	1.91
42909483--42909531	20	2.4	20	75	3	53	28	51	6	14	1.66
42911905--42911937	17	2.1	16	88	11	50	51	6	9	33	1.58
42934411--42934444	6	6.0	6	90	10	54	67	0	0	32	0.91
42934433--42934467	17	2.0	18	88	5	54	48	2	0	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42935475--42935505	15	2.1	14	94	5	53	25	3	6	64	1.33
42947488--42947527	19	2.0	20	85	4	55	52	5	5	37	1.45
42947546--42947597	10	5.3	9	78	15	50	55	3	0	40	1.18
42948118--42948319	10	21.2	9	64	20	56	31	3	3	60	1.33
42948119--42948184	28	2.3	29	82	10	73	33	4	6	56	1.44
42948233--42948277	22	2.0	22	86	0	63	24	6	4	64	1.37
42948768--42948822	22	2.7	19	69	15	56	50	0	3	45	1.19
42949820--42949874	22	2.7	19	69	15	56	50	0	3	45	1.19
42950504--42950691	59	3.2	59	63	17	156	32	4	7	54	1.49
42950487--42950719	116	2.0	117	99	0	459	32	6	8	53	1.56
42964763--42964860	43	2.3	40	78	14	101	52	1	2	44	1.19
42964799--42964864	25	2.4	28	85	12	84	51	1	3	43	1.26
42973132--42973158	3	9.0	3	100	0	54	66	0	0	33	0.92
42973183--42973229	6	7.5	6	86	9	67	78	4	0	17	0.90
42973187--42973241	20	2.8	20	83	5	67	78	3	1	16	0.98
42973182--42973241	26	2.3	26	88	5	86	76	5	1	16	1.04
42976732--42976756	10	2.5	10	100	0	50	24	32	0	44	1.54
42981714--42981744	9	3.4	9	90	0	53	25	12	22	38	1.90
42983825--42983956	40	3.4	39	73	10	119	32	23	18	25	1.97
42986781--42986806	11	2.4	11	100	0	52	61	0	0	38	0.96
42986789--42986834	16	2.7	18	80	19	71	56	0	0	43	0.99
42986789--42986835	17	2.8	17	84	15	71	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42988736--42988772	16	2.4	16	90	4	58	70	0	13	16	1.17
42989180--42989230	26	1.9	27	84	4	68	7	52	1	37	1.42
43001154--43001200	21	2.2	21	81	7	60	19	6	8	65	1.41
43002659--43002722	32	2.0	32	100	0	128	31	9	12	46	1.73
43011693--43011813	34	3.3	34	65	27	86	52	6	2	38	1.41
43011667--43011821	76	2.0	77	93	3	269	49	7	3	40	1.46
43018789--43018826	20	1.9	20	84	10	51	26	2	5	65	1.27
43020592--43020618	11	2.5	11	100	0	54	29	7	25	37	1.83
43043611--43043646	2	18.0	2	88	0	54	55	44	0	0	0.99
43043612--43043650	6	6.5	6	96	0	51	58	41	0	0	0.98
43043612--43043650	12	3.2	12	92	0	60	58	41	0	0	0.98
43055284--43055356	30	2.5	31	78	17	75	54	5	1	38	1.32
43067903--43067930	14	2.0	14	100	0	56	57	0	7	35	1.26
43073584--43073613	3	10.0	3	100	0	60	33	0	33	33	1.58
43077499--43077538	6	6.7	6	86	11	55	85	2	10	2	0.80
43077499--43077538	11	3.3	12	86	10	55	85	2	10	2	0.80
43077497--43077538	17	2.4	17	92	4	66	83	2	11	2	0.84
43079252--43079281	3	10.0	3	100	0	60	33	0	33	33	1.58
43088458--43088495	19	2.0	19	100	0	76	52	5	15	26	1.64
43091130--43091213	31	2.7	31	87	7	109	40	7	5	46	1.56
43091130--43091223	31	3.1	28	84	9	89	41	7	5	45	1.55
43091582--43091650	31	2.3	29	80	5	75	34	2	7	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43094781--43094806	11	2.4	11	100	0	52	65	0	0	34	0.93
43098419--43098710	43	6.8	43	90	2	419	26	33	20	19	1.96
43106065--43107004	41	23.0	41	96	0	1481	26	30	20	23	1.98
43107059--43107176	40	3.0	40	81	9	154	24	18	19	37	1.94
43109038--43109203	89	1.8	91	83	5	221	39	7	6	46	1.58
43111209--43111249	21	2.0	21	85	9	57	82	14	2	0	0.76
43111278--43111357	27	3.0	27	92	0	124	27	27	30	15	1.96
43111405--43111489	12	7.1	12	69	20	54	67	0	32	0	0.91
43111405--43111539	10	13.8	10	71	20	65	65	0	33	0	0.98
43111392--43111492	28	3.3	29	76	15	89	65	0	34	0	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136