genome.fa.s10.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  21  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6658060--6658159	42	2.4	42	94	0	173	36	10	28	26	1.88
6658994--6659076	23	3.5	24	85	3	98	21	15	21	40	1.90
6667207--6667494	17	16.5	17	69	18	130	45	11	13	29	1.78
6667207--6667494	35	8.2	33	71	16	131	45	11	13	29	1.78
6667256--6667387	68	1.9	67	79	11	144	43	11	14	30	1.80
6667197--6667496	18	16.9	19	68	15	123	46	11	13	29	1.78
6667363--6667498	72	1.9	72	89	3	211	43	9	13	33	1.77
6667676--6667714	20	2.0	20	94	0	69	38	10	12	38	1.78
6668327--6668377	10	5.1	11	80	20	58	5	17	0	76	0.98
6668329--6668379	20	2.6	19	85	14	68	3	17	0	78	0.90
6668478--6668540	21	2.9	21	80	4	72	0	26	1	71	0.95
6668951--6669037	30	2.9	30	79	5	95	35	1	27	35	1.65
6668922--6669048	30	4.3	30	73	10	93	38	3	24	33	1.74
6670047--6670079	16	2.1	16	94	0	57	51	6	18	24	1.68
6672147--6672290	46	3.2	45	75	8	150	14	17	22	45	1.85
6672160--6672276	22	5.3	22	71	6	83	14	16	23	46	1.83
6672091--6672244	68	2.3	68	82	0	191	15	18	21	44	1.86
6672160--6672323	89	1.8	90	88	1	249	15	17	21	45	1.85
6678012--6678060	22	2.2	22	88	0	71	30	28	14	26	1.95
6680439--6680508	25	2.8	24	84	4	86	27	28	15	28	1.96
6683116--6683221	52	2.0	52	92	0	176	43	16	12	28	1.83
6684014--6684082	30	2.3	30	94	0	120	26	18	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6686119--6686193	37	2.0	37	100	0	150	26	18	14	40	1.90
6687185--6687236	27	1.9	27	81	14	63	32	5	1	59	1.32
6688635--6688690	27	2.1	27	100	0	112	37	0	35	26	1.57
6691397--6691483	41	2.1	41	82	4	104	18	21	27	32	1.97
6690760--6691427	114	5.9	114	95	0	1124	29	18	23	28	1.98
6692196--6692226	14	2.1	15	94	5	55	29	0	32	38	1.57
6692289--6692327	17	2.4	16	84	12	53	30	0	33	35	1.58
6692296--6692328	17	1.9	17	93	0	57	27	0	36	36	1.57
6692669--6692721	20	2.6	20	79	8	54	66	7	1	24	1.28
6693015--6693286	84	3.2	83	79	5	251	27	16	23	31	1.96
6695492--6695681	91	2.1	91	96	3	346	46	9	6	37	1.62
6702461--6702597	66	2.1	66	84	5	179	40	17	27	13	1.88
6702588--6702680	21	4.4	21	79	0	96	35	15	43	6	1.72
6703029--6703426	43	9.3	43	77	3	325	24	19	29	26	1.98
6703349--6703493	43	3.4	43	75	2	130	28	30	19	21	1.97
6707270--6707301	16	1.9	17	93	6	57	50	0	0	50	1.00
6707288--6708066	389	2.0	390	99	0	1551	40	8	11	39	1.71
6717563--6717660	50	2.0	50	81	4	117	39	14	15	30	1.87
6723864--6723913	17	2.9	17	82	8	57	72	2	0	26	0.96
6723889--6723919	5	6.0	5	92	7	53	77	0	0	22	0.77
6723880--6723918	16	2.4	16	87	8	53	79	0	0	20	0.73
6729135--6729235	31	3.3	31	73	8	107	52	3	3	39	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6729538--6729707	85	2.0	85	96	0	313	18	22	18	39	1.92
6730803--6730847	22	2.0	22	100	0	90	28	17	13	40	1.88
6731298--6731332	18	2.0	18	88	5	54	54	5	20	20	1.64
6732284--6732312	14	2.1	14	93	6	51	13	0	3	82	0.79
6733632--6733767	40	3.5	39	77	9	125	33	27	16	22	1.96
6735099--6735130	3	10.7	3	100	0	64	65	0	0	34	0.93
6736962--6737218	27	9.5	27	80	0	271	18	18	21	41	1.91
6736962--6737229	81	3.3	80	83	3	329	19	17	22	41	1.90
6737844--6737890	24	1.9	24	86	4	67	27	34	0	38	1.57
6740145--6740399	27	9.5	26	82	6	260	21	16	20	41	1.90
6740155--6740399	54	4.6	52	84	7	294	21	16	20	42	1.90
6745129--6745195	34	1.9	35	87	3	100	31	8	14	44	1.76
6746233--6746321	46	1.9	46	86	0	124	34	10	16	38	1.83
6754310--6754388	24	3.2	24	78	8	72	35	17	29	17	1.93
6756723--6756760	18	2.2	17	86	9	51	55	10	0	34	1.34
6763513--6763585	27	2.7	27	77	12	78	43	0	30	26	1.55
6763439--6763598	74	2.2	73	85	7	207	43	0	30	25	1.55
6765756--6766006	43	5.8	43	89	1	378	23	31	19	25	1.98
6765756--6766063	129	2.4	129	80	3	289	25	28	18	27	1.98
6766350--6766395	21	2.2	21	88	0	65	6	39	19	34	1.78
6766350--6766543	87	2.2	87	89	0	289	12	27	18	40	1.87
6767325--6767362	19	2.0	19	94	0	67	23	28	5	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6770407--6770458	26	1.9	27	84	7	70	21	9	13	55	1.66
6774400--6774537	40	3.5	38	76	7	114	36	18	23	21	1.95
6774571--6774725	41	3.8	41	90	0	238	21	18	30	29	1.97
6775070--6775107	14	2.7	15	84	12	53	26	2	31	39	1.70
6776134--6776243	54	2.0	54	94	0	193	15	23	35	25	1.94
6776820--6776849	9	3.3	9	95	0	51	60	23	0	16	1.36
6778247--6778306	30	2.0	31	83	3	77	18	41	1	38	1.60
6779551--6779583	16	2.0	17	88	5	50	60	3	12	24	1.46
6780154--6780305	76	2.0	76	98	0	295	36	13	15	34	1.87
6782609--6782710	43	2.4	43	88	0	150	18	15	30	35	1.92
6785524--6785571	24	1.9	24	83	8	60	33	14	6	45	1.70
6789316--6789369	13	4.2	13	90	0	81	27	12	24	35	1.92
6789306--6789369	26	2.5	26	81	0	83	29	12	20	37	1.89
6790678--6790703	5	5.2	5	100	0	52	19	19	19	42	1.90
6792569--6792617	20	2.5	19	77	6	53	63	6	14	16	1.49
6794237--6794282	23	2.0	23	100	0	92	34	8	13	43	1.74
6797976--6798037	31	2.0	31	84	3	81	45	9	3	41	1.53
6805137--6805175	14	2.8	14	96	0	69	30	23	10	35	1.88
6806450--6806511	21	3.0	21	87	0	88	43	17	19	19	1.88
6815584--6815635	24	2.2	24	89	0	77	55	9	1	32	1.43
6816137--6816187	20	2.5	21	78	15	61	33	5	0	60	1.21
6820750--6820808	23	2.4	24	77	11	66	16	3	15	64	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6820753--6820800	23	2.1	24	88	7	73	18	4	18	58	1.55
6820760--6820808	23	2.1	23	88	7	73	18	2	18	61	1.45
6832008--6832312	161	1.9	160	86	3	434	46	10	27	15	1.78
6833825--6833870	23	2.0	23	83	8	58	23	4	30	41	1.74
6834524--6834573	18	2.6	19	84	6	57	54	12	0	34	1.38
6834843--6834897	26	2.1	26	89	0	83	27	25	7	40	1.82
6834859--6834902	21	2.2	20	83	4	52	29	20	6	43	1.78
6835142--6835199	25	2.2	25	87	6	80	39	0	1	58	1.08
6835222--6835275	20	2.8	18	72	22	56	29	1	5	62	1.28
6836404--6836437	14	2.4	14	85	14	52	64	8	14	11	1.49
6840709--6840742	14	2.4	14	85	14	52	64	8	14	11	1.49
6843292--6843333	16	2.6	16	92	0	66	42	7	2	47	1.43
6843307--6843367	22	2.8	21	87	5	77	45	1	1	50	1.21
6844959--6844983	13	1.9	13	100	0	50	48	8	20	24	1.76
6847789--6847838	22	2.3	22	82	0	64	46	0	4	50	1.20
6862480--6862591	41	2.7	41	87	0	143	29	25	18	25	1.98
6862679--6862821	76	1.9	75	82	8	182	46	19	2	30	1.64
6871247--6871326	41	2.0	41	89	0	124	30	25	18	26	1.98
6871247--6871339	41	2.3	41	86	0	123	30	24	18	26	1.98
6874198--6874231	17	1.9	18	94	5	61	41	0	14	44	1.45
6874639--6874732	28	3.3	27	72	19	84	22	17	17	43	1.87
6884972--6885012	2	21.0	2	95	5	75	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6897806--6897861	24	2.2	26	81	12	73	30	1	3	64	1.21
6900265--6900316	4	12.8	4	80	11	61	48	3	1	46	1.31
6903996--6904141	48	3.1	48	83	1	177	23	23	30	22	1.99
6905141--6905171	15	2.1	15	100	0	62	29	0	25	45	1.54
6906169--6906244	29	2.6	28	77	8	80	25	7	1	65	1.27
6906296--6906417	29	4.3	29	72	19	87	28	4	4	62	1.34
6906297--6906423	28	4.6	25	74	15	92	28	4	3	62	1.33
6906297--6906423	57	2.3	54	83	12	161	28	4	3	62	1.33
6906342--6906478	75	1.9	72	83	4	175	28	5	5	61	1.39
6906305--6906533	26	8.8	26	73	12	143	27	6	6	60	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136