genome.fa.s10.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  32  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10335281--10335314	16	2.1	16	88	0	50	20	14	20	44	1.87
10338984--10339027	5	8.6	5	82	5	52	84	2	13	0	0.73
10338963--10339027	10	6.1	10	79	13	67	83	1	10	4	0.87
10339906--10340301	92	4.4	88	74	13	283	32	18	20	28	1.96
10340008--10340117	43	2.6	41	80	8	107	29	19	24	27	1.98
10340046--10340435	44	8.6	45	75	10	197	32	19	20	27	1.97
10339905--10340307	180	2.2	183	87	3	573	33	17	20	28	1.96
10340182--10340486	44	6.8	44	77	6	274	32	20	19	28	1.96
10339907--10340381	180	2.6	175	81	8	420	32	18	20	28	1.96
10339903--10340490	137	4.3	131	74	10	395	33	19	19	27	1.96
10353264--10353417	80	1.9	80	87	0	227	37	12	10	39	1.77
10357149--10357180	16	1.9	17	93	6	57	53	0	21	25	1.46
10357646--10357755	23	5.1	21	85	7	141	19	20	22	37	1.94
10360404--10360532	67	1.9	67	88	3	197	27	30	17	24	1.97
10360681--10360796	57	2.0	58	88	10	173	25	24	22	28	1.99
10362944--10362998	26	2.1	26	83	6	67	38	9	27	25	1.86
10364226--10364346	57	2.1	57	82	1	152	45	7	18	28	1.76
10368784--10368824	19	2.2	18	86	4	55	34	17	0	48	1.47
10373381--10373422	21	2.0	21	95	0	75	9	26	14	50	1.73
10374310--10374377	25	2.7	25	81	4	93	25	16	23	35	1.95
10378500--10378552	21	2.5	21	93	0	88	18	41	24	15	1.89
10380653--10380742	43	2.1	43	97	0	171	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10385960--10385994	18	1.9	18	88	11	54	17	17	0	65	1.27
10387401--10387454	14	3.9	14	80	9	65	22	0	1	75	0.89
10387403--10387453	13	3.7	13	79	10	57	21	0	1	76	0.88
10390781--10390810	16	1.9	15	93	6	51	13	0	6	80	0.91
10391686--10391765	40	2.0	40	100	0	160	17	17	17	47	1.83
10393685--10393834	77	2.0	76	94	2	266	20	12	17	50	1.77
10394408--10394438	16	1.9	16	93	0	53	38	3	6	51	1.44
10400349--10400390	19	2.2	19	87	8	59	42	9	0	47	1.36
10400349--10400386	9	3.8	10	89	10	51	42	10	0	47	1.38
10403345--10403382	19	2.0	19	85	10	51	34	2	0	63	1.09
10403734--10403771	19	2.0	19	85	10	51	34	2	0	63	1.09
10403087--10403864	389	2.0	389	99	0	1540	41	8	8	40	1.67
10404635--10404677	15	2.9	15	80	10	52	34	0	2	62	1.08
10407108--10407158	21	2.4	21	83	3	66	41	9	0	49	1.36
10407119--10407164	21	2.2	21	84	0	56	45	8	0	45	1.34
10415379--10415411	16	2.1	16	100	0	66	18	45	12	24	1.83
10417327--10417413	43	2.0	43	95	2	158	50	10	9	29	1.67
10424520--10424724	48	4.2	48	85	0	239	24	28	20	26	1.99
10430285--10430494	48	4.4	48	83	0	240	22	28	21	27	1.99
10432220--10432342	49	2.5	49	83	0	156	22	36	17	22	1.95
10433362--10433407	22	2.0	24	87	8	69	32	0	6	60	1.22
10436001--10436034	14	2.4	14	90	0	50	55	2	0	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10436204--10436232	15	2.0	15	93	6	51	20	0	13	65	1.26
10440969--10441678	353	2.0	353	99	0	1404	30	26	18	24	1.97
10442673--10442734	25	2.5	25	75	0	70	32	19	19	29	1.96
10445259--10445313	26	2.0	29	83	16	73	16	20	41	21	1.90
10445260--10445324	28	2.2	28	81	10	78	20	23	38	18	1.93
10446209--10446280	35	2.1	35	82	10	85	8	22	16	52	1.70
10448876--10448932	29	2.0	29	85	0	78	19	21	40	19	1.92
10449863--10449922	25	2.4	25	83	5	77	6	21	20	51	1.70
10461419--10461770	18	19.4	18	73	12	238	31	17	16	34	1.92
10461467--10461770	56	5.4	55	85	7	328	31	17	16	34	1.92
10461467--10461770	38	8.1	36	76	7	248	31	17	16	34	1.92
10465780--10465818	20	2.0	20	89	0	60	38	10	15	35	1.81
10468218--10468242	12	2.1	12	100	0	50	64	0	0	36	0.94
10468461--10468586	42	3.0	42	100	0	252	28	7	21	42	1.79
10471460--10471502	23	1.9	22	85	4	59	27	2	6	62	1.33
10477733--10477763	14	2.1	15	94	5	55	54	6	19	19	1.65
10478871--10478914	6	6.7	6	80	19	52	52	0	2	45	1.13
10484158--10484267	45	2.6	43	83	8	129	30	27	6	35	1.82
10484246--10484299	16	3.4	16	89	0	81	29	35	1	33	1.69
10497213--10497253	22	2.0	22	85	9	59	43	4	2	48	1.37
10498116--10498165	24	2.1	24	88	0	73	52	22	2	24	1.58
10499879--10500103	101	2.2	101	88	0	333	31	14	24	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10500112--10500162	24	2.1	24	92	0	84	49	1	25	23	1.61
10504697--10504743	2	23.5	2	100	0	94	0	0	48	51	1.00
10504855--10505093	101	2.4	100	87	2	318	33	12	24	29	1.93
10505087--10505137	24	2.1	24	92	0	84	49	1	25	23	1.61
10507898--10507971	10	7.9	10	76	14	77	45	9	16	28	1.78
10507898--10507971	20	4.0	20	76	16	86	45	9	16	28	1.78
10507910--10507940	15	2.0	16	93	6	55	45	6	19	29	1.75
10509688--10509739	3	17.7	3	94	4	88	36	32	0	30	1.58
10519244--10519275	3	10.7	3	100	0	64	34	31	0	34	1.58
10522135--10522175	13	3.2	13	89	0	55	87	0	12	0	0.53
10522134--10522178	16	2.9	16	87	6	58	86	0	13	0	0.57
10533843--10533897	27	2.0	27	89	0	83	40	10	16	32	1.83
10541214--10541454	78	3.1	77	85	5	299	34	15	12	37	1.85
10541457--10541664	84	2.7	74	81	13	281	32	11	12	43	1.78
10541498--10541685	84	2.2	84	94	0	322	31	10	12	45	1.75
10558187--10558237	23	2.3	23	82	3	68	47	19	15	17	1.83
10558114--10558248	57	2.4	58	83	8	179	47	17	17	17	1.83
10559174--10559203	15	2.0	15	93	0	51	70	13	6	10	1.34
10560192--10560253	21	2.7	23	72	25	58	29	19	8	43	1.79
10563310--10563348	14	2.8	14	84	11	53	12	5	7	74	1.20
10567672--10567721	22	2.3	22	86	6	66	20	10	46	24	1.81
10567867--10567931	17	3.6	17	78	19	62	70	0	6	23	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10567875--10567939	4	15.5	4	76	17	53	72	0	4	23	1.03
10567871--10567942	25	2.8	25	82	12	85	70	0	5	23	1.08
10570349--10570460	55	2.0	55	98	0	215	27	17	24	30	1.97
10571907--10571942	15	2.5	14	86	8	54	44	8	0	47	1.33
10578370--10578421	14	3.7	13	76	18	50	71	0	25	3	1.03
10580413--10580610	97	2.1	96	97	0	369	34	14	10	40	1.80
10581764--10581827	31	2.2	28	84	13	78	25	12	3	59	1.48
10582500--10582551	9	5.8	9	81	0	59	26	9	19	44	1.81
10582500--10582551	18	2.9	18	91	0	86	26	9	19	44	1.81
10582494--10582552	27	2.2	27	82	8	75	27	8	18	45	1.78
10583586--10583629	22	2.0	22	95	0	79	13	29	4	52	1.60
10583587--10583636	22	2.3	22	86	3	75	10	28	6	56	1.56
10587296--10587398	49	2.1	49	90	3	163	31	8	9	50	1.66
10590076--10590171	45	2.2	44	88	5	140	36	29	5	29	1.79
10592293--10592362	27	2.6	27	81	0	77	34	25	22	17	1.96
10595051--10595116	30	2.2	31	78	8	73	18	15	6	60	1.54
10595157--10595188	12	2.7	12	95	0	55	34	3	0	62	1.11
10600150--10600183	16	2.1	16	100	0	68	50	11	20	17	1.77
10609687--10609723	3	12.3	3	100	0	74	67	0	0	32	0.91
10611922--10611974	22	2.3	23	81	15	65	32	11	11	45	1.76
10620866--10620894	13	2.2	13	100	0	58	34	13	17	34	1.89
10630946--10631206	134	1.9	134	84	7	344	38	13	4	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10631977--10632021	23	2.0	23	86	0	63	40	8	11	40	1.72
10641283--10641346	29	2.2	29	94	0	110	42	1	21	34	1.63
10641381--10641419	18	2.2	18	95	0	69	28	2	10	58	1.44
10644557--10644582	5	5.2	5	100	0	52	61	0	0	38	0.96
10650271--10650304	17	1.9	18	88	5	52	5	26	8	58	1.51
10652947--10653078	32	4.3	31	74	21	111	53	3	4	39	1.37
10652959--10653087	64	2.0	65	83	4	163	53	3	4	38	1.37
10655023--10655060	15	2.5	15	87	12	51	50	2	2	44	1.30
10655068--10655096	14	2.0	15	93	6	51	37	0	0	62	0.96
10655258--10655331	30	2.4	30	84	10	89	40	0	8	51	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136