genome.fa.s10.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  134  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46365079--46365128	19	2.6	19	79	14	50	42	0	2	56	1.11
46365904--46365940	7	5.3	7	90	0	56	18	2	0	78	0.87
46376611--46376654	22	2.0	22	86	0	61	47	6	0	45	1.29
46376782--46376807	13	2.0	13	100	0	52	23	7	23	46	1.78
46378322--46378369	11	4.5	10	78	14	51	18	29	2	50	1.59
46381600--46381887	125	2.3	125	92	0	468	28	20	19	31	1.97
46382056--46382085	15	1.9	16	93	6	53	50	33	3	13	1.58
46383968--46384119	74	2.0	75	98	1	297	42	7	9	40	1.66
46396211--46396261	17	3.1	17	75	13	52	41	0	7	50	1.31
46398533--46398588	18	3.1	18	75	12	60	51	0	3	44	1.18
46399325--46399443	60	2.0	60	89	0	184	52	12	1	32	1.49
46399578--46399631	27	2.0	27	81	0	63	20	33	29	16	1.95
46399713--46399764	21	2.5	20	72	9	50	61	0	1	36	1.07
46400155--46400188	3	11.3	3	100	0	68	32	0	0	67	0.91
46404297--46404433	51	2.7	49	82	8	168	27	14	25	32	1.95
46418745--46418822	36	2.2	36	90	0	120	10	17	38	33	1.84
46431292--46431679	125	3.0	127	79	5	363	27	10	12	49	1.73
46431438--46431702	131	2.0	130	83	2	325	27	11	11	49	1.74
46431485--46431899	215	1.9	219	82	5	531	24	11	13	50	1.75
46431360--46432023	344	1.9	344	84	3	899	26	10	12	49	1.74
46431704--46432710	257	3.9	254	82	5	1143	26	11	15	46	1.80
46431704--46432710	127	7.9	126	81	6	1059	26	11	15	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46431704--46432710	384	2.6	381	84	4	1260	26	11	15	46	1.80
46432744--46433064	109	3.0	106	79	9	321	30	10	11	47	1.73
46434753--46435938	199	5.9	199	81	5	1295	28	19	20	30	1.97
46434923--46435934	399	2.5	393	84	6	1311	29	19	20	30	1.97
46441584--46441628	22	2.0	22	86	0	63	42	6	4	46	1.50
46443320--46443407	40	2.1	41	85	10	126	39	4	30	25	1.75
46454140--46454166	3	9.0	3	100	0	54	33	0	0	66	0.92
46454564--46454592	6	4.8	6	100	0	58	65	0	0	34	0.93
46454607--46454646	16	2.5	16	91	0	62	47	2	7	42	1.45
46454579--46454631	22	2.4	22	87	0	70	52	1	1	43	1.23
46455027--46455068	13	3.2	13	80	13	50	71	0	9	19	1.13
46464860--46464920	3	20.3	3	100	0	122	32	0	0	67	0.91
46464937--46464978	20	2.0	21	95	4	77	54	0	23	21	1.44
46465544--46465608	31	2.1	31	81	16	73	43	3	3	50	1.33
46465601--46465676	37	2.1	37	82	4	93	40	5	2	51	1.38
46470367--46470448	39	2.1	39	97	2	157	40	7	4	47	1.53
46472157--46472205	23	2.1	23	84	0	62	71	0	6	22	1.08
46473429--46473725	147	2.0	147	99	0	585	56	6	6	31	1.49
46474402--46474431	12	2.5	12	100	0	60	13	13	53	20	1.72
46479157--46479235	4	18.2	4	75	14	52	68	6	22	2	1.25
46482594--46482777	41	4.6	41	78	9	191	27	16	22	33	1.96
46482594--46482849	40	6.5	40	72	9	195	27	17	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46482594--46482844	118	2.1	118	90	0	385	26	16	23	33	1.96
46485879--46485920	12	3.5	12	100	0	84	14	14	52	19	1.75
46492704--46492733	13	2.3	13	94	0	51	50	13	3	33	1.58
46492947--46493003	30	1.9	30	85	3	80	31	24	1	42	1.65
46495111--46495145	15	2.4	15	90	4	54	42	0	2	54	1.15
46503123--46503154	13	2.5	13	94	0	55	31	0	0	68	0.90
46508983--46509091	23	5.0	23	81	11	131	35	23	22	17	1.95
46510142--46510176	18	1.9	18	88	0	52	0	22	0	77	0.78
46510513--46510607	40	2.4	40	87	0	136	11	14	29	44	1.81
46511301--46511329	12	2.3	13	94	5	51	17	0	20	62	1.33
46511565--46511589	12	2.1	12	100	0	50	24	0	0	76	0.80
46511730--46511766	18	2.1	18	100	0	74	40	10	27	21	1.86
46514235--46514268	15	2.3	15	90	10	52	23	0	0	76	0.79
46517405--46517437	13	2.4	14	90	10	50	3	0	12	84	0.72
46517977--46518053	38	2.0	39	94	2	138	50	27	3	18	1.64
46518191--46518265	40	1.9	38	97	0	105	38	4	10	46	1.57
46519049--46519096	13	3.9	13	81	13	57	43	2	0	54	1.12
46519049--46519106	13	4.7	12	79	12	55	44	1	0	53	1.10
46526057--46526081	13	1.9	13	100	0	50	40	0	4	56	1.18
46526430--46526467	15	2.6	15	80	19	53	52	0	0	47	1.00
46526433--46526468	18	1.9	19	88	5	56	52	0	0	47	1.00
46531710--46531743	3	11.3	3	100	0	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46532580--46532619	18	2.2	19	86	4	55	35	22	5	37	1.76
46543878--46543904	13	2.1	13	100	0	54	14	0	0	85	0.61
46544551--46544590	13	3.0	13	89	10	55	25	0	27	47	1.52
46544560--46544596	14	2.7	14	91	4	58	27	0	27	45	1.54
46551816--46551967	80	1.9	80	94	2	270	33	13	9	42	1.78
46562932--46562970	3	13.0	3	88	0	51	25	33	0	41	1.56
46562932--46562970	15	2.6	15	87	0	60	25	33	0	41	1.56
46562934--46562968	18	1.9	18	100	0	70	22	34	0	42	1.54
46564399--46564448	25	2.0	25	84	3	66	48	0	2	50	1.12
46606890--46606932	22	2.0	22	82	8	54	55	23	2	18	1.54
46614028--46614068	20	2.1	20	86	4	57	31	4	12	51	1.60
46619055--46619091	18	2.2	17	90	9	58	43	2	10	43	1.53
46620453--46620679	73	3.2	70	78	10	216	60	4	7	27	1.44
46634476--46634513	16	2.3	17	90	4	60	44	0	2	52	1.14
46635315--46635362	23	2.0	24	84	8	62	58	0	10	31	1.32
46636314--46636388	36	2.1	36	95	5	134	21	14	33	30	1.93
46657832--46657900	35	2.0	35	85	5	95	39	2	1	56	1.23
46666374--46666414	18	2.3	18	86	0	55	17	7	2	73	1.17
46679425--46679489	29	2.2	29	77	2	67	38	9	9	43	1.69
46684456--46684481	5	5.2	5	100	0	52	38	19	19	23	1.93
46689337--46689397	29	2.1	29	82	8	72	22	14	16	45	1.84
46702012--46702077	31	2.1	31	88	0	96	21	10	24	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46702683--46702713	6	5.2	6	100	0	62	48	0	0	51	1.00
46718495--46718529	3	11.7	3	100	0	70	68	0	31	0	0.90
46718725--46718767	21	2.0	22	90	4	70	46	18	18	16	1.84
46723919--46723946	7	4.0	7	100	0	56	57	0	0	42	0.99
46729289--46729315	2	13.5	2	100	0	54	48	0	0	51	1.00
46731116--46731152	19	1.9	19	88	0	56	43	0	0	56	0.99
46743481--46743628	79	1.9	80	89	1	235	35	8	8	47	1.66
46745011--46745046	18	1.9	19	88	5	56	38	2	0	58	1.13
46751125--46751166	22	2.0	21	86	13	59	35	2	0	61	1.09
46752107--46752245	19	7.0	20	68	15	76	59	2	5	32	1.33
46761670--46761723	26	2.0	27	82	10	67	53	3	7	35	1.47
46769355--46769421	31	2.2	31	83	5	82	31	19	23	25	1.98
46777656--46777709	28	1.9	28	85	7	74	53	18	3	24	1.60
46777671--46777715	21	2.1	21	87	0	63	55	15	4	24	1.59
46781549--46781833	130	2.2	130	90	1	448	36	9	16	37	1.81
46781836--46782137	130	2.3	129	81	5	369	36	7	16	39	1.78
46782406--46782477	35	2.1	35	100	0	144	15	13	23	47	1.81
46794162--46794215	4	13.5	4	100	0	108	50	25	0	24	1.50
46807039--46807367	163	2.0	163	99	0	649	34	17	17	30	1.93
46816986--46817016	16	2.0	15	93	6	53	32	9	6	51	1.60
46819360--46819390	16	1.9	16	93	0	53	51	6	3	38	1.44
46824381--46824448	31	2.2	31	89	0	100	30	17	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46827387--46827419	14	2.4	14	90	5	50	69	0	0	30	0.88
46827576--46827906	188	1.8	178	84	9	450	34	17	17	30	1.93
46828896--46828943	15	3.1	15	77	11	53	72	12	0	14	1.11
46829119--46829144	3	8.7	3	100	0	52	34	30	0	34	1.58
46832288--46832481	98	2.0	99	98	1	381	48	6	4	40	1.49
46856618--46856657	18	2.3	18	87	8	57	57	5	0	37	1.21
46865975--46866026	6	8.2	6	95	4	77	38	0	46	15	1.46
46866030--46866383	60	5.9	60	92	5	585	31	5	51	11	1.59
46866440--46866492	21	2.5	22	84	6	74	33	35	5	24	1.79
46869597--46869636	20	2.0	20	90	0	62	50	12	10	27	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136