genome.fa.s10.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  49  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16152717--16152798	25	3.2	25	77	16	71	18	25	23	32	1.97
16160035--16160068	5	6.6	5	93	6	59	41	0	20	38	1.53
16160274--16160300	10	2.7	10	100	0	54	33	40	18	7	1.78
16160398--16160460	25	2.6	24	80	5	72	19	31	19	30	1.96
16160472--16160531	25	2.4	25	80	2	68	15	25	25	35	1.94
16160488--16160585	25	3.9	23	69	20	63	19	25	21	33	1.97
16160612--16160694	25	3.3	25	81	6	114	21	25	21	31	1.98
16176199--16176247	20	2.4	20	93	3	80	53	14	10	22	1.71
16178370--16178431	9	6.3	9	72	17	52	66	3	4	25	1.27
16178482--16178535	10	5.3	10	80	12	56	77	1	3	16	1.00
16187831--16188020	105	1.8	105	84	0	263	33	21	10	34	1.88
16188685--16188879	98	2.0	98	93	0	336	37	23	9	29	1.87
16189545--16189594	26	2.0	26	92	4	84	58	4	8	30	1.45
16189849--16189900	25	2.2	25	82	6	63	69	3	5	21	1.26
16190213--16190283	19	3.7	19	88	0	115	38	12	9	39	1.77
16190569--16190675	43	2.4	44	78	6	119	30	26	14	28	1.95
16198990--16199041	25	2.2	25	82	6	63	69	3	5	21	1.26
16199336--16199409	19	3.9	19	83	0	103	37	12	9	40	1.75
16201007--16201032	12	2.2	12	100	0	52	7	15	30	46	1.74
16201219--16201299	41	2.0	41	85	4	110	25	25	20	27	1.99
16202959--16202987	13	2.2	13	100	0	58	65	6	6	20	1.40
16207013--16207228	43	5.0	43	85	6	276	20	18	31	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16207325--16207368	21	2.1	21	91	0	70	38	27	20	13	1.90
16219490--16219526	19	1.9	19	94	0	65	35	8	13	43	1.74
16225624--16225829	41	5.0	41	87	1	279	18	28	16	36	1.93
16225640--16225787	20	7.2	20	65	10	75	16	29	16	37	1.91
16232336--16232362	9	3.0	9	100	0	54	66	11	11	11	1.45
16236181--16236271	9	10.0	9	73	15	53	58	1	2	38	1.18
16237352--16237415	27	2.3	28	81	5	76	56	0	3	40	1.15
16237317--16237407	9	10.0	9	73	15	53	58	1	2	38	1.18
16238581--16238619	19	2.1	19	85	9	53	30	2	2	64	1.21
16242880--16242968	9	10.0	9	67	16	51	58	1	3	37	1.22
16242921--16242964	19	2.4	19	88	3	63	54	0	4	40	1.21
16245425--16245470	22	2.0	23	84	16	60	50	10	8	30	1.68
16251969--16252019	26	2.0	26	88	0	75	35	3	0	60	1.15
16252164--16252197	15	2.4	14	95	5	59	52	8	14	23	1.69
16254106--16254150	22	2.0	22	100	0	90	53	0	8	37	1.32
16256691--16256830	55	2.6	55	88	1	210	26	9	16	47	1.76
16256996--16257122	60	2.1	60	82	7	159	39	3	14	43	1.61
16264019--16264060	19	2.2	19	83	8	50	9	4	45	40	1.58
16272534--16272577	17	2.6	17	86	10	56	6	18	0	75	1.02
16274056--16274093	14	2.5	16	87	8	53	31	5	2	60	1.33
16276032--16276071	17	2.4	17	82	0	53	40	2	2	55	1.27
16278642--16278692	22	2.3	22	100	0	102	27	33	0	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16278664--16278776	51	2.2	51	96	0	208	28	30	0	41	1.56
16278791--16278842	10	5.2	10	76	0	50	32	0	0	67	0.91
16278791--16278834	20	2.2	20	87	0	61	34	0	0	65	0.93
16278777--16278842	30	2.2	31	94	2	116	36	0	1	62	1.05
16290457--16290853	51	7.8	51	75	7	299	29	23	15	31	1.95
16290458--16290853	102	3.9	102	87	1	492	29	23	15	31	1.95
16290425--16290853	153	2.8	151	74	8	386	29	24	14	31	1.94
16292208--16292242	17	2.1	17	89	5	54	48	2	5	42	1.41
16296915--16296950	18	1.9	19	88	5	56	38	22	0	38	1.54
16297223--16297273	17	3.2	17	76	23	58	3	29	0	66	1.09
16297223--16297279	29	2.0	28	89	6	87	3	28	0	68	1.06
16297875--16298049	88	2.0	88	90	2	280	46	13	12	28	1.79
16300861--16301189	40	8.6	40	69	11	186	23	21	19	35	1.96
16300861--16301056	75	2.6	75	90	0	302	21	21	19	36	1.95
16300935--16301178	115	2.1	115	82	1	292	23	20	18	38	1.93
16313284--16313341	28	2.1	28	96	0	107	43	17	13	25	1.86
16335120--16335160	20	2.0	20	85	0	55	46	4	17	31	1.69
16338711--16338767	15	3.5	15	70	21	51	40	7	1	50	1.40
16338715--16338771	17	3.3	17	72	13	62	38	8	1	50	1.44
16338704--16338769	35	1.9	33	93	6	114	42	6	1	50	1.36
16340506--16340745	119	2.0	120	99	0	473	47	8	5	38	1.55
16341947--16341976	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16357800--16357828	10	3.0	10	95	5	51	41	0	0	58	0.98
16363745--16364129	192	2.0	193	99	0	763	39	4	18	37	1.71
16364996--16365047	15	3.5	15	84	5	70	51	0	17	30	1.45
16365455--16365487	14	2.4	14	90	5	50	18	0	30	51	1.46
16375419--16375463	24	2.0	23	83	12	58	53	11	4	31	1.56
16395210--16395690	27	17.8	27	88	0	629	19	18	21	40	1.91
16406813--16406894	25	3.3	25	84	3	103	25	15	25	32	1.96
16414254--16414347	25	3.8	25	87	2	127	29	17	22	30	1.96
16424242--16424334	27	3.5	26	72	5	80	23	25	23	26	2.00
16424267--16424359	25	3.6	25	73	18	84	23	21	24	30	1.99
16424242--16424361	52	2.3	53	88	5	183	24	24	24	27	2.00
16431551--16431618	25	2.7	25	81	0	91	22	22	23	32	1.98
16433331--16433364	17	2.0	17	88	0	50	35	0	0	64	0.94
16434759--16434824	29	2.3	29	79	7	73	42	12	19	25	1.86
16454365--16454533	9	17.4	9	70	17	108	33	1	4	59	1.28
16454363--16454411	10	4.7	11	75	14	50	32	2	0	65	1.04
16454365--16454533	19	8.7	18	71	16	108	33	1	4	59	1.28
16457499--16457621	54	2.3	54	80	8	142	19	32	25	22	1.97
16460893--16460937	5	9.0	5	95	0	81	42	17	0	40	1.50
16470032--16470222	95	2.0	95	95	0	346	22	33	18	25	1.96
16469992--16470276	145	1.9	147	82	5	360	22	31	20	26	1.98
16469959--16470276	50	6.3	49	81	8	322	22	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16473053--16473104	23	2.3	23	93	0	86	25	7	25	42	1.81
16477063--16477114	25	2.2	23	93	6	86	44	1	0	53	1.11
16477063--16477126	25	2.6	24	87	9	76	45	1	0	53	1.10
16477085--16477131	18	2.6	18	78	15	53	44	0	0	55	0.99
16477396--16477434	15	2.6	14	80	11	51	66	0	2	30	1.05
16479346--16479419	36	2.1	36	100	0	148	24	8	21	45	1.78
16498975--16499211	41	5.8	40	85	7	325	21	18	28	30	1.97
16498975--16499211	81	2.9	80	89	3	341	21	18	28	30	1.97
16498974--16499211	122	1.9	124	96	3	446	21	18	28	31	1.97
16499410--16499456	14	3.3	15	88	8	71	27	0	31	40	1.57
16499727--16499806	14	5.6	14	75	8	63	25	2	37	35	1.69
16502326--16502420	27	3.5	27	70	16	72	67	3	2	27	1.17
16504330--16504556	43	5.3	43	86	4	289	19	18	32	29	1.96
16504788--16504849	29	2.0	32	84	9	85	51	8	24	16	1.71
16513345--16513404	30	2.0	30	83	6	77	58	6	3	31	1.40
16513350--16513426	26	3.0	23	75	17	64	63	5	2	28	1.29
16513394--16513454	30	2.1	28	84	6	77	70	3	0	26	1.02
16515131--16515278	45	3.3	45	77	0	145	23	22	18	34	1.96
16515264--16515421	44	3.7	44	77	7	128	31	24	20	24	1.98
16515719--16516224	44	11.8	44	79	7	547	28	25	17	28	1.98
16515803--16516224	170	2.5	170	90	0	646	28	25	17	28	1.97
16515719--16516227	126	4.0	129	83	6	547	27	25	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16516191--16516625	88	5.0	88	81	3	306	20	23	27	28	1.99
16516238--16516625	88	4.5	86	85	2	492	20	23	27	29	1.99
16516238--16516625	173	2.2	174	86	1	528	20	23	27	29	1.99
16522362--16522425	30	2.2	28	86	8	83	67	3	1	28	1.15
16522437--16522486	26	2.0	26	84	11	68	58	4	6	32	1.41
16522436--16522486	27	1.9	26	84	4	66	56	3	5	33	1.42
16523850--16524221	182	2.0	183	98	0	728	43	10	8	37	1.70
16529344--16529477	71	1.9	71	87	3	198	24	23	19	32	1.98
16530575--16530655	42	1.9	42	89	0	126	18	27	34	19	1.95
16530766--16530844	41	1.9	42	84	7	108	46	5	6	41	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136