genome.fa.s10.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  29  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9268022--9268138	41	2.9	41	85	0	117	18	29	16	35	1.93
9268064--9268150	41	2.1	41	82	0	102	22	25	14	36	1.93
9273979--9274020	20	2.2	19	87	12	59	16	14	4	64	1.45
9279735--9279764	16	1.9	16	93	6	53	50	20	0	30	1.49
9287288--9287329	15	2.7	15	85	3	57	42	11	30	14	1.81
9301761--9301801	10	3.9	10	84	12	55	53	0	0	46	1.00
9305812--9305947	41	3.3	41	82	0	155	33	16	24	25	1.96
9306362--9306465	50	2.1	50	100	0	208	41	3	14	40	1.64
9307969--9308066	49	2.0	49	97	0	187	47	9	26	16	1.76
9311096--9311121	11	2.4	11	100	0	52	34	7	0	57	1.27
9312244--9312391	41	3.6	41	89	0	224	30	20	26	22	1.98
9315311--9315349	14	2.8	13	85	11	51	76	2	2	17	1.01
9319169--9319294	62	2.0	62	90	0	198	38	0	38	23	1.55
9323524--9324442	458	2.0	459	99	0	1831	39	17	14	29	1.88
9326077--9326149	21	3.3	21	68	17	67	41	19	1	38	1.60
9326073--9326162	45	2.0	45	100	0	180	42	20	2	35	1.64
9333753--9333828	23	3.3	22	81	7	98	23	19	25	31	1.98
9334890--9334929	16	2.4	16	95	4	71	57	0	25	17	1.40
9338839--9338877	18	2.2	17	86	13	53	33	0	20	46	1.51
9338955--9338991	8	4.6	8	96	0	65	21	13	29	35	1.92
9339078--9339199	23	5.3	23	84	0	163	22	22	27	28	1.99
9339078--9339192	46	2.5	46	94	0	194	21	21	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9353506--9353635	27	4.9	27	83	0	154	36	13	19	30	1.91
9353782--9353868	26	3.3	26	69	6	77	41	10	22	25	1.85
9353754--9353842	27	3.3	27	71	3	81	44	11	21	22	1.83
9353763--9353906	53	2.7	53	88	6	195	40	12	22	24	1.88
9356154--9356301	40	3.8	40	81	5	185	35	19	25	20	1.96
9357251--9357283	16	2.1	16	94	0	57	6	21	6	66	1.35
9358987--9359078	27	3.4	27	74	3	96	43	10	22	22	1.84
9358988--9359148	53	3.1	53	80	5	177	36	11	25	26	1.90
9359159--9359223	27	2.4	26	76	16	69	41	10	21	26	1.86
9361047--9361101	8	7.0	8	75	10	51	52	3	1	41	1.29
9363508--9363540	17	1.9	17	93	0	57	54	18	15	12	1.71
9365447--9365479	17	1.9	17	93	0	57	54	18	15	12	1.71
9367770--9367795	11	2.4	11	100	0	52	80	0	0	19	0.71
9367783--9367814	17	1.9	17	93	6	57	62	3	3	31	1.26
9375578--9375622	22	2.0	22	95	0	81	8	31	17	42	1.80
9376955--9377018	29	2.2	29	83	5	76	43	3	3	50	1.33
9386312--9386375	35	1.9	32	81	12	76	20	21	15	42	1.89
9386769--9386829	27	2.3	27	79	0	68	16	19	34	29	1.94
9388175--9388262	46	1.9	46	81	9	108	39	18	19	22	1.92
9388435--9388486	22	2.4	22	83	0	68	46	21	15	17	1.84
9388508--9388648	32	4.4	32	81	3	151	39	21	19	20	1.93
9388508--9388651	64	2.2	64	81	4	175	38	21	19	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9388820--9388928	24	4.5	24	82	0	110	44	22	8	23	1.80
9388976--9389280	27	11.3	27	74	7	210	23	18	17	40	1.90
9388961--9389280	81	4.0	80	81	8	317	23	17	18	40	1.91
9388961--9389280	54	5.9	53	73	3	244	23	17	18	40	1.91
9392565--9392634	22	3.2	22	62	22	56	38	10	21	30	1.86
9392556--9392644	44	2.0	44	97	0	169	33	10	24	31	1.89
9397324--9398421	556	2.0	555	83	2	1414	30	16	19	32	1.95
9402366--9402565	98	2.0	98	90	0	310	31	19	21	28	1.97
9402277--9402693	226	1.8	225	81	6	520	31	20	20	28	1.97
9402686--9402877	44	4.6	41	71	12	147	30	22	18	28	1.97
9402468--9402893	128	3.3	127	79	3	424	31	21	19	26	1.98
9402656--9402845	44	4.4	42	71	15	131	32	20	20	26	1.97
9402656--9402893	129	1.9	129	88	4	347	32	20	20	26	1.97
9406790--9407020	76	3.0	76	96	0	435	25	17	14	41	1.88
9409906--9409944	19	2.1	18	86	13	53	46	0	30	23	1.53
9420789--9420916	43	3.0	43	84	0	175	32	25	16	25	1.96
9447551--9447728	50	3.6	50	87	5	227	20	30	22	26	1.98
9450064--9450099	18	1.9	19	94	5	65	22	27	5	44	1.75
9451310--9451376	27	2.5	27	82	0	71	37	16	26	19	1.93
9456040--9456135	38	2.6	38	86	5	133	47	3	3	45	1.34
9456652--9456699	25	1.9	25	95	0	87	37	12	35	14	1.84
9467495--9467534	20	2.0	20	85	9	55	55	5	7	32	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9469409--9469449	20	2.1	19	86	4	55	41	9	7	41	1.66
9481248--9481317	27	2.6	27	81	0	95	31	15	27	25	1.96
9481575--9481624	26	1.9	26	88	8	75	42	12	16	30	1.84
9489520--9489557	20	1.9	19	89	5	58	23	7	7	60	1.51
9494360--9494411	3	17.3	3	100	0	104	67	0	0	32	0.91
9495034--9495093	10	6.0	9	75	22	50	31	3	3	61	1.28
9495034--9495099	20	3.4	18	76	15	60	34	3	3	59	1.28
9495617--9495664	24	2.0	25	87	4	71	54	8	0	37	1.31
9500311--9500352	6	6.8	6	91	2	66	54	0	28	16	1.42
9521690--9523539	926	2.0	926	99	0	3657	34	14	16	34	1.89
9524467--9524902	51	8.6	51	77	6	402	28	14	27	29	1.95
9524467--9524902	102	4.3	102	89	1	608	28	14	27	29	1.95
9532354--9532887	51	10.5	51	79	4	517	29	15	26	28	1.96
9532354--9532887	102	5.3	102	91	1	781	29	15	26	28	1.96
9537215--9537305	29	3.1	30	84	4	123	21	26	14	37	1.92
9537373--9537450	29	2.7	29	85	2	111	25	24	10	39	1.87
9537204--9537420	86	2.5	86	79	8	251	23	26	11	39	1.88
9543676--9543732	20	2.8	21	86	5	82	49	10	1	38	1.48
9565259--9565382	50	2.5	50	80	2	124	29	24	25	20	1.99
9572566--9572741	56	3.4	50	72	13	119	27	23	27	21	1.99
9581053--9581119	26	2.6	26	90	0	116	26	26	25	20	1.99
9584776--9584810	18	1.9	18	88	11	54	57	5	8	28	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9586289--9586839	44	12.8	44	69	16	267	26	22	20	30	1.98
9586283--9586536	129	2.0	128	87	3	368	26	20	21	31	1.98
9586328--9586886	173	3.2	173	88	2	789	26	23	20	29	1.99
9586377--9586933	44	12.8	44	69	14	244	26	23	20	29	1.99
9596084--9596118	3	11.3	3	87	6	52	62	2	2	31	1.24
9597168--9597197	14	2.1	15	93	6	53	20	0	6	73	1.05
9599598--9600015	113	3.6	115	86	6	530	43	9	16	30	1.80
9599955--9600170	78	2.8	78	92	2	344	46	11	14	27	1.79
9604377--9604416	20	1.9	22	90	10	66	60	0	0	40	0.97
9604793--9604852	25	2.3	26	88	2	86	31	1	1	65	1.13
9609961--9610371	202	2.0	203	95	0	743	37	21	7	32	1.82
9613225--9613451	33	6.5	33	70	21	133	32	28	18	20	1.97
9613262--9613576	90	3.2	101	84	10	465	32	28	19	19	1.96
9613528--9613605	26	2.9	27	92	5	122	29	30	21	17	1.97
9613942--9613999	30	1.9	30	82	0	71	29	24	6	39	1.81
9618800--9618861	32	1.9	32	96	0	115	29	19	14	37	1.91
9628298--9628340	7	6.1	7	83	0	59	44	27	0	27	1.55
9630055--9630105	18	2.7	20	75	25	56	17	3	7	70	1.27
9645078--9645274	98	2.0	98	93	0	340	28	9	24	37	1.86
9656502--9657280	132	6.0	132	91	1	1207	29	20	25	24	1.99
9656858--9657174	44	7.2	43	63	15	137	29	19	26	24	1.99
9658229--9658271	22	2.0	22	85	0	59	13	0	13	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9672631--9672663	12	2.8	12	95	0	57	33	48	9	9	1.66
9674059--9674115	28	2.1	27	90	3	87	33	7	14	45	1.71
9678328--9678360	15	2.1	16	88	5	50	30	12	15	42	1.83
9679295--9679416	36	3.2	36	69	18	102	33	14	17	34	1.90
9683092--9683157	26	2.5	26	85	4	89	24	21	19	34	1.96
9687763--9687826	27	2.4	28	82	10	89	21	1	21	54	1.53
9692934--9692979	23	2.0	23	87	8	67	45	0	2	52	1.13
9692932--9692985	27	1.9	28	88	7	83	48	0	1	50	1.11
9693031--9693088	29	2.0	29	83	6	73	51	17	6	24	1.69
9698992--9699033	22	2.0	21	90	4	66	66	0	7	26	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136