genome.fa.s10.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  79  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25854281--25854317	19	1.9	19	88	0	56	37	2	0	59	1.12
25873114--25873663	140	3.9	139	83	4	687	23	12	12	51	1.74
25873748--25873824	22	3.7	21	72	20	72	25	1	3	68	1.14
25878760--25878805	19	2.4	18	82	10	56	23	19	8	47	1.77
25883641--25883830	44	4.3	44	80	4	220	32	14	25	27	1.94
25883685--25883847	89	1.8	89	86	0	236	30	15	26	27	1.96
25890508--25890559	26	2.0	26	100	0	104	26	11	19	42	1.85
25890515--25890567	26	2.1	25	86	6	72	30	9	20	39	1.84
25901662--25901802	50	2.8	50	78	0	147	23	26	20	29	1.99
25904637--25904715	20	4.0	20	71	12	63	36	21	29	12	1.90
25904635--25904822	60	3.1	60	85	0	259	36	19	29	14	1.92
25904809--25904928	57	2.1	56	93	1	204	27	22	25	25	2.00
25904866--25905029	85	1.9	85	93	2	285	29	20	23	26	1.99
25923156--25923209	19	2.8	18	83	13	63	37	11	9	42	1.73
25923152--25923209	20	2.9	19	82	14	73	39	12	8	39	1.73
25925225--25925268	22	2.0	23	81	4	54	36	6	22	34	1.81
25925429--25925499	20	3.5	20	75	9	72	35	4	16	43	1.68
25927277--25927459	91	2.0	91	100	0	366	28	24	12	35	1.91
25927770--25927827	19	2.9	18	82	17	62	36	10	10	43	1.73
25927934--25927981	22	2.0	25	88	11	75	39	6	2	52	1.39
25930502--25930602	40	2.5	40	93	0	175	32	23	16	26	1.96
25937326--25937426	40	2.5	40	95	0	184	32	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25940148--25940390	51	4.8	50	77	6	240	30	26	17	25	1.97
25940140--25940386	101	2.5	100	83	2	298	30	25	17	25	1.98
25945017--25945046	11	2.7	11	94	0	51	40	6	3	50	1.45
25945587--25945611	4	6.2	4	100	0	50	24	0	0	76	0.80
25946219--25946322	52	2.0	52	100	0	208	44	3	15	36	1.65
25946595--25946735	44	3.2	44	88	3	203	40	22	4	32	1.73
25947474--25947570	44	2.2	44	80	3	108	27	26	17	27	1.98
25956405--25956435	16	1.9	16	100	0	62	6	0	58	35	1.24
25956885--25956991	53	2.0	53	100	0	214	22	7	39	30	1.82
25966803--25966829	9	3.0	9	100	0	54	11	0	0	88	0.50
25968473--25968571	47	2.2	45	92	3	162	20	14	11	54	1.69
25968468--25968548	23	3.5	23	67	21	69	19	13	11	55	1.68
25980247--25980824	289	2.0	289	100	0	1156	37	18	17	26	1.93
25990697--25990744	19	2.5	19	96	0	87	60	4	18	16	1.51
25990838--25990903	6	11.0	6	91	0	87	60	1	22	15	1.43
25990838--25990902	24	2.7	24	92	0	103	60	1	23	15	1.44
25991048--25991109	26	2.4	26	88	0	88	40	11	14	33	1.82
26003936--26003965	16	1.9	16	93	6	53	50	20	0	30	1.49
26012001--26012044	19	2.5	17	81	7	52	9	20	47	22	1.78
26019905--26019937	17	1.9	17	93	0	57	15	6	15	63	1.49
26023924--26023950	11	2.5	11	100	0	54	25	7	7	59	1.51
26047843--26047897	25	2.2	25	81	12	60	49	5	1	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26052719--26052744	12	2.2	12	100	0	52	73	7	0	19	1.07
26056608--26056665	21	2.6	24	81	10	61	20	3	3	72	1.14
26056608--26056695	23	3.7	24	72	15	76	20	4	2	72	1.13
26056611--26056720	12	9.2	12	68	15	68	22	4	2	70	1.19
26056650--26056719	32	2.2	33	84	2	88	20	4	2	72	1.14
26056719--26056748	15	1.9	16	93	6	53	13	3	16	66	1.37
26058226--26058263	6	6.2	6	85	14	51	15	2	2	78	0.97
26058226--26058263	14	3.1	12	82	17	51	15	2	2	78	0.97
26059980--26060021	19	2.2	19	100	0	84	21	0	9	69	1.17
26059986--26060030	19	2.4	19	88	3	65	20	2	11	66	1.33
26062528--26062648	47	2.6	46	85	12	158	40	5	14	38	1.70
26069032--26069093	30	2.0	31	90	3	99	22	48	0	29	1.51
26074676--26074844	84	2.0	85	98	1	331	40	8	8	43	1.65
26074955--26075014	31	2.0	31	86	3	86	46	10	3	40	1.54
26086185--26086210	12	2.2	12	100	0	52	42	0	34	23	1.54
26094651--26094817	42	4.0	42	85	2	196	19	17	25	37	1.93
26095372--26095410	20	2.0	20	90	10	62	5	12	0	82	0.83
26095842--26095905	23	2.9	21	73	13	56	42	0	10	46	1.39
26095575--26095906	145	2.2	150	85	6	435	38	5	8	47	1.58
26095882--26095937	27	2.0	27	89	3	85	44	1	10	42	1.49
26096582--26096650	10	7.1	9	77	22	61	21	4	1	72	1.10
26096598--26096646	16	3.2	15	83	13	57	20	4	2	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26111626--26111656	6	5.2	6	100	0	62	19	0	0	80	0.71
26111940--26111964	5	5.0	5	100	0	50	60	0	0	40	0.97
26116561--26116970	86	4.8	86	83	5	435	43	12	13	30	1.81
26117432--26117484	20	2.7	20	82	2	54	54	7	7	30	1.56
26118190--26118230	20	2.0	20	85	9	55	31	4	7	56	1.48
26123603--26123654	28	1.9	27	88	7	79	36	17	9	36	1.82
26123661--26123754	28	3.4	28	83	4	129	29	25	14	29	1.95
26123908--26124058	57	2.6	57	91	3	241	37	29	9	23	1.87
26130153--26130343	51	3.7	51	80	5	242	23	16	27	32	1.96
26130161--26130354	102	1.9	102	94	0	343	22	17	27	31	1.97
26132157--26132233	37	2.1	37	100	0	154	32	27	5	35	1.79
26135215--26135374	28	5.8	28	78	4	137	26	25	15	33	1.95
26135243--26135392	56	2.7	55	78	5	149	27	24	14	34	1.94
26143585--26143662	39	2.0	39	100	0	156	20	17	30	30	1.96
26149297--26149359	32	2.0	32	84	6	83	31	14	14	39	1.86
26149520--26149573	26	2.0	26	82	10	65	59	1	1	37	1.19
26149582--26149644	28	2.2	28	85	0	81	57	3	1	38	1.24
26149920--26149983	26	2.6	25	77	5	67	28	1	4	65	1.21
26153071--26153146	27	2.9	26	75	7	82	32	7	7	51	1.60
26153544--26153572	5	5.8	5	100	0	58	82	0	0	17	0.66
26154013--26154049	11	3.5	11	85	7	58	29	0	0	70	0.88
26157870--26157953	14	5.8	14	76	5	60	25	28	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26157870--26157954	29	2.9	29	84	3	100	25	28	25	20	1.99
26157891--26157954	14	4.5	14	76	3	65	28	29	23	18	1.98
26157985--26158023	15	2.6	15	87	0	51	28	41	17	12	1.87
26167839--26167874	13	2.9	13	92	8	58	38	0	0	61	0.96
26168058--26168082	10	2.5	10	100	0	50	40	0	0	60	0.97
26182311--26182337	7	3.9	7	100	0	54	44	40	0	14	1.46
26188349--26188447	49	2.0	51	88	4	148	55	11	7	26	1.60
26191873--26191947	37	2.0	37	100	0	150	26	26	2	44	1.68
26193010--26193047	17	2.2	18	86	13	53	42	10	15	31	1.81
26193041--26193194	51	3.0	51	92	2	249	55	11	6	26	1.58
26194385--26194410	9	2.9	9	100	0	52	76	11	0	11	1.01
26203352--26203391	21	1.9	21	84	0	53	25	7	25	42	1.80
26205557--26205659	21	4.9	21	75	14	79	21	37	22	18	1.94
26205566--26205659	42	2.2	42	81	7	111	23	38	22	15	1.93
26206612--26206672	23	2.6	23	81	2	68	42	16	13	27	1.85
26206619--26206679	24	2.6	23	81	2	68	44	16	14	24	1.85
26207402--26207447	24	1.9	24	81	0	56	73	4	4	17	1.15
26210567--26210613	14	3.4	13	82	11	58	76	2	0	21	0.89
26210569--26210609	20	2.0	20	90	9	66	75	2	0	21	0.92
26214572--26214607	9	4.0	9	96	0	63	75	0	22	2	0.94
26218348--26218723	189	2.0	189	93	0	635	24	14	23	37	1.92
26220957--26221019	17	3.4	18	82	10	65	73	3	3	20	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26224916--26225040	27	4.6	27	78	15	123	29	12	19	38	1.89
26224914--26225039	54	2.3	52	77	11	146	30	12	19	37	1.89
26224914--26225055	27	5.3	26	76	12	81	32	12	18	36	1.88
26233722--26233760	20	2.0	20	85	10	53	46	12	5	35	1.65
26239513--26239594	25	3.3	25	79	16	89	30	25	20	23	1.99
26240866--26240923	24	2.5	23	80	5	71	27	20	39	12	1.88
26245366--26245398	2	16.5	2	100	0	66	48	0	0	51	1.00
26253301--26253345	20	2.2	20	84	0	54	13	35	13	37	1.84
26260210--26260266	20	2.9	18	76	12	51	19	3	7	70	1.26
26267188--26267273	28	2.8	31	74	16	90	33	20	20	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136