genome.fa.s10.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  101  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33968545--33968622	35	2.2	36	81	6	88	24	8	3	62	1.41
33969764--33969788	3	8.3	3	100	0	50	0	36	0	64	0.94
33974691--33974743	24	2.2	24	83	6	63	32	3	1	62	1.24
33975079--33975144	24	2.7	23	81	9	78	60	4	0	34	1.17
33975159--33975215	29	2.0	29	82	6	71	70	5	0	24	1.08
33978366--33978811	66	6.8	66	70	8	296	39	21	24	15	1.92
33978366--33978808	198	2.2	198	93	0	751	39	21	24	15	1.92
33978639--33978878	66	3.6	67	73	8	215	40	17	25	16	1.90
33978366--33978878	198	2.6	198	87	3	631	38	20	25	15	1.91
33978624--33979009	132	2.9	130	83	3	443	40	18	27	14	1.89
33992759--33992785	2	13.5	2	100	0	54	48	0	0	51	1.00
33998908--33998947	15	2.7	14	88	7	53	25	0	5	70	1.08
33998905--33998947	14	3.0	14	86	3	59	23	0	4	72	1.04
34005409--34005461	15	3.5	15	81	0	52	37	11	39	11	1.77
34005409--34005466	21	2.8	21	78	0	62	36	10	41	12	1.76
34006268--34006327	30	2.0	30	100	0	120	50	10	23	16	1.75
34009429--34009517	44	2.0	45	84	8	119	39	25	5	29	1.79
34012659--34012781	62	2.0	62	98	0	237	47	18	8	26	1.76
34022396--34022839	180	2.5	177	91	3	658	44	14	6	35	1.70
34026585--34026626	2	22.0	2	85	9	52	50	0	4	45	1.23
34028178--34028386	107	2.0	106	89	2	321	28	21	19	30	1.97
34029408--34029500	37	2.4	38	77	15	102	51	3	3	41	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34031733--34031780	13	3.5	15	75	18	50	52	2	0	45	1.12
34036859--34036893	17	2.0	18	88	5	54	54	0	2	42	1.15
34036851--34037273	210	2.0	211	99	0	839	45	8	8	37	1.64
34041126--34041196	28	2.5	29	82	11	94	32	12	5	49	1.64
34041291--34041340	17	2.9	17	78	18	59	16	12	0	72	1.13
34043111--34043232	21	5.8	21	71	3	84	17	20	18	44	1.87
34043130--34043254	42	3.0	42	85	0	160	15	21	19	44	1.87
34043089--34043216	63	2.0	62	83	1	157	17	20	18	43	1.88
34043141--34043257	21	5.6	21	69	4	65	13	21	20	44	1.86
34043497--34043528	10	3.2	10	95	0	55	28	12	9	50	1.71
34045672--34045697	6	4.3	6	100	0	52	15	0	0	84	0.62
34046827--34046967	25	6.0	24	86	4	173	39	22	21	16	1.92
34051727--34051766	16	2.5	16	88	8	55	40	7	2	50	1.44
34051743--34051800	22	2.6	23	83	8	75	48	1	1	48	1.22
34057052--34057097	22	2.1	22	84	11	60	58	10	4	26	1.50
34063020--34063059	20	1.9	22	85	10	57	30	7	10	52	1.62
34068290--34068327	2	19.0	2	94	0	67	47	2	0	50	1.15
34069339--34069399	30	2.0	31	84	6	81	60	13	3	22	1.47
34069431--34069468	20	1.9	20	94	0	67	26	10	28	34	1.90
34075047--34075178	39	3.4	39	87	0	192	41	21	19	17	1.90
34078952--34079208	129	2.0	129	93	0	442	33	26	17	21	1.96
34082845--34082900	29	1.9	29	92	0	94	28	5	0	66	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34084754--34084796	15	2.9	15	82	3	52	27	9	9	53	1.63
34088894--34088948	21	2.6	21	94	0	92	23	5	36	34	1.78
34090777--34090916	70	2.0	71	94	1	246	43	10	7	38	1.67
34099387--34099459	34	2.2	33	97	2	137	24	24	23	27	2.00
34099403--34099457	17	3.2	17	66	19	51	23	25	23	27	2.00
34115236--34115329	10	9.3	10	74	13	68	65	2	3	28	1.19
34118263--34118385	10	12.1	10	72	10	61	34	0	4	60	1.15
34118324--34118385	33	1.9	32	87	6	90	37	0	1	61	1.06
34118395--34118453	29	2.0	30	87	9	86	32	0	6	61	1.22
34118272--34118453	10	18.6	9	68	18	55	34	1	4	59	1.24
34124271--34124335	24	2.6	25	78	9	69	24	26	16	32	1.96
34126091--34126123	11	3.3	10	88	12	50	72	0	0	27	0.85
34129305--34129343	20	1.9	21	89	5	62	41	0	10	48	1.37
34133748--34133778	14	2.2	14	94	0	53	48	9	0	41	1.36
34136013--34136057	19	2.4	19	100	0	90	28	15	0	55	1.41
34164302--34164327	4	6.5	4	100	0	52	23	0	0	76	0.78
34168212--34168284	26	2.8	26	76	13	80	15	24	23	36	1.93
34169438--34169493	28	2.0	28	82	6	69	14	19	35	30	1.91
34179700--34179820	64	1.9	64	82	3	154	34	21	22	21	1.97
34180188--34180218	11	2.8	11	100	0	62	48	16	0	35	1.46
34191216--34191290	28	2.7	28	70	8	64	33	4	2	60	1.30
34213420--34213448	6	5.0	6	95	4	51	86	0	13	0	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34224688--34224721	11	2.8	12	91	8	52	35	8	11	44	1.72
34227989--34228032	16	2.6	16	82	10	52	61	9	0	29	1.27
34240453--34240493	14	2.6	16	77	22	50	60	0	2	36	1.10
34240937--34241069	9	13.8	9	66	13	50	63	5	1	30	1.25
34240939--34240989	10	5.2	10	76	4	50	70	3	0	25	1.04
34241022--34241081	19	3.1	19	73	20	52	61	10	1	26	1.37
34241026--34241069	21	2.2	20	84	12	54	68	9	0	22	1.18
34241457--34241504	11	4.3	12	72	17	50	27	2	2	68	1.11
34245250--34245358	49	2.2	49	80	6	123	33	15	23	27	1.95
34256199--34256223	10	2.5	10	100	0	50	44	8	28	20	1.79
34259681--34259721	19	2.1	20	86	4	57	34	9	0	56	1.32
34260132--34260160	6	4.8	6	100	0	58	0	31	0	68	0.89
34260132--34260168	18	2.1	18	89	0	56	0	32	0	67	0.91
34261441--34261591	74	2.0	75	98	1	295	47	3	3	45	1.38
34261454--34261610	74	2.2	73	90	4	237	47	3	4	44	1.39
34268663--34268857	98	2.0	99	98	1	383	41	15	10	32	1.81
34268810--34268860	23	2.2	24	80	16	63	58	0	0	41	0.98
34272492--34272540	20	2.6	18	78	18	55	71	0	0	28	0.86
34272489--34272536	18	2.7	18	76	0	60	72	0	0	27	0.84
34272489--34272537	19	2.7	18	75	6	55	73	0	0	26	0.83
34276087--34276144	29	1.9	29	82	6	71	37	15	13	32	1.87
34276650--34276700	25	2.1	24	82	10	59	37	3	0	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34278330--34278396	9	7.4	9	81	6	82	41	19	11	26	1.86
34278330--34278396	27	2.5	27	90	0	98	41	19	11	26	1.86
34288123--34288186	18	3.4	18	75	23	60	60	0	0	39	0.97
34288140--34288224	45	1.9	44	82	2	107	52	0	0	47	1.00
34291143--34291235	22	4.0	23	86	6	118	19	21	17	41	1.90
34294465--34294502	19	2.1	19	90	5	60	57	7	0	34	1.28
34294445--34294497	20	2.7	20	82	11	56	58	11	0	30	1.33
34305547--34305901	175	2.0	174	92	2	597	39	19	18	23	1.92
34311580--34311612	7	4.7	7	100	0	66	45	0	12	42	1.41
34315600--34315659	19	3.0	21	76	11	54	41	0	1	56	1.09
34320424--34320727	97	3.1	97	91	4	520	36	14	14	34	1.87
34320422--34320727	100	3.1	100	92	4	530	35	14	14	35	1.87
34321690--34321739	24	2.0	25	88	11	77	40	0	4	56	1.18
34321690--34321747	24	2.4	24	80	13	66	43	0	3	53	1.17
34326214--34326256	13	3.2	13	81	18	52	72	0	0	27	0.85
34326213--34326255	22	2.0	22	90	0	68	69	0	0	30	0.88
34329248--34329393	72	2.0	73	98	1	285	43	4	13	39	1.64
34332855--34332907	26	2.1	25	82	6	63	11	13	11	64	1.51
34334898--34335013	58	2.0	60	91	3	191	33	24	3	38	1.72
34334891--34335038	30	5.0	30	85	4	194	33	23	4	38	1.74
34335410--34335452	22	2.0	21	86	4	59	37	11	9	41	1.74
34335556--34335630	18	4.3	18	84	5	109	34	14	9	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34335555--34335631	35	2.2	36	88	2	120	36	14	9	40	1.77
34341553--34341606	27	2.0	27	82	13	67	79	9	5	5	1.04
34342471--34343117	75	8.6	75	94	2	1025	25	15	19	38	1.91
34342470--34343116	302	2.2	297	91	2	1028	25	15	19	38	1.91
34364301--34364326	2	13.0	2	100	0	52	50	0	0	50	1.00
34379648--34379708	28	2.2	28	82	8	72	34	6	3	55	1.42
34382118--34382161	22	1.9	24	86	9	65	50	4	4	40	1.43
34386688--34386745	25	2.3	25	80	14	66	44	1	1	51	1.21
34387335--34387372	11	3.5	11	85	0	58	52	0	0	47	1.00
34387335--34387407	22	3.1	22	76	9	74	53	0	1	45	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136