genome.fa.s10.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  104  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35070313--35070416	47	2.2	47	94	0	181	68	0	30	0	0.96
35073626--35073674	26	1.9	25	84	12	64	77	2	10	10	1.07
35074202--35074238	17	2.2	17	90	9	58	78	0	18	2	0.87
35087129--35087167	3	13.0	3	100	0	78	66	0	33	0	0.92
35093616--35093656	15	2.7	15	88	0	64	31	0	0	68	0.90
35094362--35094402	15	2.7	15	88	0	64	31	0	0	68	0.90
35093360--35094851	746	2.0	746	100	0	2984	33	12	12	41	1.81
35098402--35098449	21	2.2	23	85	14	66	22	4	2	70	1.15
35099005--35099037	15	2.1	17	88	11	52	21	6	12	60	1.53
35102858--35103022	83	2.0	84	93	1	287	42	12	10	35	1.76
35107532--35107556	13	1.9	13	100	0	50	28	0	0	72	0.86
35111369--35111421	22	2.4	21	75	6	52	52	3	0	43	1.19
35116468--35116698	115	2.0	116	99	0	455	36	9	6	46	1.63
35118229--35118270	21	1.9	21	85	9	57	40	9	2	47	1.49
35120025--35120058	7	4.9	7	96	0	59	26	0	26	47	1.53
35121154--35121187	16	2.1	16	88	0	50	50	0	14	35	1.44
35130352--35130842	247	2.0	247	96	0	910	24	24	15	36	1.94
35133062--35133123	21	3.0	21	71	17	67	54	6	1	37	1.36
35139141--35139265	62	2.0	63	88	1	189	41	15	9	33	1.79
35142345--35142370	3	8.7	3	100	0	52	30	0	34	34	1.58
35146060--35146093	16	2.1	16	94	0	59	41	2	5	50	1.42
35146164--35146211	25	1.9	25	100	0	96	47	8	4	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35146646--35146689	9	4.9	9	91	0	70	11	34	20	34	1.88
35147203--35147269	17	3.8	17	74	7	62	55	16	5	22	1.63
35148216--35149059	424	2.0	424	98	0	1643	19	18	26	34	1.96
35149242--35149283	3	14.0	3	100	0	84	33	0	0	66	0.92
35153728--35153810	9	9.0	9	75	13	80	78	0	21	0	0.75
35153728--35153812	6	14.8	6	74	18	74	78	0	21	0	0.74
35153729--35153807	40	2.1	39	88	11	119	79	0	20	0	0.73
35153742--35153813	11	6.5	11	77	17	69	79	0	20	0	0.74
35155071--35155762	299	2.3	300	89	2	1023	32	22	21	24	1.98
35155071--35155761	100	6.9	100	88	0	988	32	22	21	24	1.98
35155077--35155814	50	14.8	50	72	2	514	31	22	21	24	1.98
35155896--35156097	44	4.5	43	73	16	133	30	24	20	24	1.99
35156858--35156927	34	2.0	35	83	8	90	40	11	0	48	1.39
35169110--35169154	23	2.0	24	83	16	60	20	11	8	60	1.57
35172916--35172960	23	2.0	23	82	8	56	48	0	2	48	1.13
35194357--35194854	251	2.0	249	80	8	562	49	9	7	33	1.63
35194891--35194934	22	1.9	24	86	9	65	0	27	0	72	0.85
35194882--35194947	13	5.3	12	76	20	57	0	27	0	72	0.85
35194887--35194943	22	2.5	23	76	15	57	0	29	0	70	0.88
35195091--35195187	33	3.2	30	67	15	72	18	16	50	14	1.78
35195241--35195306	24	2.7	26	72	15	68	57	0	0	42	0.98
35195255--35195310	21	2.5	22	75	24	64	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35195580--35195627	16	2.9	16	82	11	53	54	0	2	43	1.12
35195960--35196006	23	2.0	23	83	8	58	27	14	4	53	1.60
35206451--35206551	41	2.4	41	81	4	123	47	16	12	22	1.81
35209706--35209761	15	3.9	15	75	6	55	37	1	0	60	1.07
35209700--35209761	21	2.9	21	80	4	70	33	1	0	64	1.03
35211894--35211949	28	2.0	28	96	0	103	28	16	14	41	1.87
35213428--35213482	3	18.3	3	100	0	110	67	0	0	32	0.91
35216193--35216307	23	5.2	23	60	16	62	40	13	14	31	1.86
35216197--35216332	44	3.1	44	100	0	272	38	13	13	34	1.84
35217178--35217244	20	3.3	20	72	4	55	17	19	8	53	1.70
35222434--35222480	22	2.1	22	96	0	85	42	17	23	17	1.88
35224347--35224373	8	3.4	8	100	0	54	48	14	0	37	1.45
35224636--35224769	21	6.5	21	86	1	164	39	17	26	16	1.91
35227614--35227737	62	2.0	62	100	0	248	45	27	4	22	1.73
35229026--35229073	24	2.0	24	100	0	96	29	8	20	41	1.81
35236984--35237016	16	2.1	15	94	5	57	66	0	6	27	1.15
35240312--35240368	27	2.1	27	96	0	105	0	12	10	77	1.00
35241177--35241204	6	4.7	6	100	0	56	14	0	0	85	0.59
35241882--35242837	44	21.0	44	74	9	659	29	19	16	34	1.93
35241882--35242837	89	10.5	92	77	9	657	29	19	16	34	1.93
35241889--35242837	133	6.9	135	73	14	481	30	19	15	34	1.93
35258313--35258340	3	9.3	3	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35268720--35268744	9	2.8	9	100	0	50	68	8	0	24	1.16
35273169--35273198	10	3.0	10	100	0	60	50	20	0	30	1.49
35273442--35273734	128	2.3	128	86	3	392	22	19	31	26	1.98
35273442--35273756	43	7.3	43	84	7	322	21	19	31	27	1.98
35273442--35273756	171	1.8	170	83	5	411	21	19	31	27	1.98
35273736--35273781	23	2.0	23	95	0	83	6	26	19	47	1.73
35274291--35274512	41	5.4	40	78	4	246	36	22	23	16	1.94
35274313--35274512	82	2.4	82	91	0	328	35	23	24	17	1.95
35277761--35278829	269	3.9	274	88	2	1567	37	15	14	33	1.87
35281204--35281233	9	3.3	9	100	0	60	53	0	0	46	1.00
35282335--35282439	44	2.5	40	76	15	113	31	29	4	34	1.78
35282333--35282441	45	2.6	44	81	8	129	31	29	5	33	1.80
35282883--35282941	29	2.0	30	87	9	86	30	5	16	47	1.69
35284658--35284697	19	2.0	20	86	13	57	37	0	0	62	0.95
35284657--35284701	20	2.2	21	81	18	60	37	0	0	62	0.96
35284707--35284751	21	2.2	20	84	8	54	31	0	2	66	1.04
35286509--35286559	17	2.7	19	79	17	61	25	15	17	41	1.89
35287937--35287997	30	2.0	30	81	6	70	39	4	1	54	1.32
35288654--35288715	30	2.1	29	82	8	72	41	0	4	53	1.22
35291561--35291971	64	6.4	64	88	2	565	31	9	17	42	1.80
35291561--35291971	96	4.3	96	88	0	561	31	9	17	42	1.80
35291561--35291971	32	12.8	32	83	0	489	31	9	17	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35301923--35302333	32	12.8	32	81	3	450	32	9	15	43	1.77
35301929--35302333	96	4.2	96	90	1	623	32	9	15	42	1.78
35305822--35305963	41	3.5	40	84	4	176	35	16	27	19	1.94
35305816--35305963	20	7.1	21	66	11	72	35	16	29	19	1.93
35312419--35312639	41	5.4	41	77	2	194	37	15	28	19	1.92
35312419--35312639	82	2.7	82	82	2	239	37	15	28	19	1.92
35317130--35317597	253	1.8	253	89	0	731	29	20	7	42	1.80
35326344--35326378	3	11.7	3	100	0	70	34	31	0	34	1.58
35338874--35338994	51	2.4	51	77	5	129	27	16	25	30	1.97
35339012--35339246	128	1.8	128	81	7	298	29	21	20	28	1.98
35339010--35339457	44	10.6	42	73	15	268	30	20	21	27	1.98
35339010--35339428	163	2.5	168	84	5	566	31	20	21	26	1.98
35340367--35340424	29	2.0	29	100	0	116	24	20	24	31	1.98
35341034--35341075	3	14.0	3	89	0	66	35	2	0	61	1.09
35341074--35341120	3	15.7	3	86	0	67	38	25	0	36	1.56
35341259--35341418	85	1.9	85	88	3	243	31	7	8	53	1.58
35345599--35345691	34	2.7	36	83	11	122	55	1	0	43	1.06
35362471--35362505	17	2.0	18	88	5	54	60	0	8	31	1.27
35381211--35381278	34	2.0	34	100	0	136	26	14	20	38	1.91
35399632--35399968	50	6.8	49	69	5	192	21	19	24	33	1.97
35399599--35400268	100	6.7	100	88	1	862	22	19	24	33	1.97
35399850--35400210	50	7.2	50	69	5	201	22	19	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35401926--35401960	15	2.3	15	85	0	52	14	14	0	71	1.15
35402806--35402845	8	5.2	8	88	11	66	0	12	0	87	0.54
35402805--35402845	14	2.9	14	92	7	66	0	14	0	85	0.60
35402836--35402894	30	1.9	31	86	10	86	11	3	8	76	1.13
35403570--35403648	35	2.3	35	93	2	142	43	5	12	39	1.65
35418187--35418348	84	1.9	84	84	0	216	37	18	19	25	1.94
35419206--35419288	41	2.0	41	100	0	166	37	19	12	31	1.88
35427333--35427418	27	3.2	27	88	3	120	33	15	29	22	1.94
35427508--35427594	27	3.2	27	86	0	102	39	16	21	22	1.92
35434319--35434347	12	2.3	13	94	5	51	0	17	0	82	0.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136