genome.fa.s10.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  4  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882032--882146	54	2.1	54	80	3	124	20	26	26	26	1.99
884641--884665	5	5.0	5	100	0	50	40	20	20	20	1.92
895743--895785	20	2.1	19	83	12	50	58	20	2	18	1.50
895867--896178	158	2.0	158	96	0	570	41	24	8	26	1.83
897143--897173	2	15.5	2	93	0	53	48	3	0	48	1.17
906264--906314	26	1.9	26	84	4	66	27	11	15	45	1.81
926584--926616	16	2.1	16	100	0	66	18	24	21	36	1.95
928884--928935	22	2.4	20	75	15	50	25	1	1	71	1.07
929862--929897	6	6.0	6	100	0	72	0	16	0	83	0.65
940199--940228	15	2.0	15	93	0	51	50	0	0	50	1.00
953176--953235	26	2.3	26	85	5	77	11	23	23	41	1.87
954825--954897	17	4.3	17	72	6	76	26	28	16	28	1.97
954943--954977	18	2.0	18	88	5	54	25	22	20	31	1.98
955706--955776	18	4.1	17	76	8	54	25	8	15	50	1.72
964489--964546	27	2.1	27	90	0	89	18	15	31	34	1.93
965107--965131	13	1.9	13	100	0	50	16	28	24	32	1.96
969402--969466	25	2.6	25	95	0	112	21	18	26	33	1.96
975532--975576	3	15.0	3	100	0	90	33	0	0	66	0.92
977077--977107	9	3.4	9	90	0	53	25	12	22	38	1.90
979409--979466	30	1.9	31	85	3	82	18	36	0	44	1.50
980608--980650	21	2.0	21	82	8	52	20	34	0	44	1.52
980794--980852	30	2.0	30	86	6	84	20	42	0	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
985654--985777	56	2.3	53	82	8	137	27	20	29	22	1.99
986889--986922	16	2.2	16	89	5	52	23	0	20	55	1.43
988064--988190	43	3.0	42	74	19	118	24	18	26	30	1.98
988833--988867	15	2.3	15	90	9	54	25	0	22	51	1.48
988933--988988	29	1.9	29	96	0	103	33	10	16	39	1.83
988992--989344	24	14.8	23	68	21	135	32	11	15	41	1.81
988962--989344	47	8.0	47	78	14	211	32	10	15	41	1.82
989009--989156	76	2.0	76	91	2	246	33	10	14	41	1.81
989054--989109	29	1.9	29	96	0	103	33	10	16	39	1.83
988892--989320	121	3.5	123	88	7	571	33	10	14	41	1.81
988962--989344	168	2.3	168	96	0	707	32	10	15	41	1.82
989222--989277	29	1.9	29	96	0	103	33	10	16	39	1.83
991494--991528	17	2.1	17	100	0	70	45	17	11	25	1.81
994497--994522	6	4.3	6	100	0	52	15	15	0	69	1.20
995298--995356	30	2.0	30	89	0	91	11	32	10	45	1.74
998652--998958	150	2.0	151	99	0	607	48	8	6	37	1.59
1008355--1009111	137	5.1	139	85	9	815	28	10	7	53	1.63
1008502--1009139	155	4.1	155	86	6	879	29	10	7	52	1.63
1011289--1011327	3	13.0	3	100	0	78	0	33	0	66	0.92
1011442--1011479	11	3.5	11	82	7	51	10	23	0	65	1.23
1011435--1011479	21	2.1	22	87	4	65	8	26	0	64	1.23
1012831--1012859	13	2.1	14	93	6	51	48	0	3	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017200--1017250	3	17.0	3	100	0	102	33	0	0	66	0.92
1017439--1017480	18	2.4	18	88	4	59	16	4	7	71	1.26
1017550--1017688	70	2.0	70	97	1	262	48	12	6	31	1.67
1020902--1020971	21	3.4	21	78	9	72	31	10	27	31	1.89
1034129--1034472	46	7.8	46	70	13	208	30	20	23	25	1.98
1034275--1034549	80	3.3	79	72	15	266	28	19	24	28	1.98
1034181--1034728	170	3.2	170	91	2	839	29	18	23	27	1.98
1034355--1034638	90	3.3	87	72	15	273	29	19	23	27	1.98
1035965--1036326	181	2.0	181	100	0	724	13	20	17	48	1.81
1043560--1043751	98	1.9	99	97	2	368	41	10	5	42	1.62
1043589--1043747	49	3.2	49	70	22	170	40	10	5	44	1.61
1047730--1047791	29	2.1	28	85	5	79	24	14	16	45	1.84
1050996--1051155	80	2.0	80	100	0	320	23	28	27	20	1.99
1061817--1061866	21	2.3	20	78	21	57	50	6	2	42	1.38
1061832--1061882	23	2.2	24	80	16	63	54	1	1	41	1.22
1061821--1061865	22	2.0	23	87	12	67	53	6	2	37	1.40
1067916--1068157	124	2.0	124	83	3	308	29	18	16	35	1.93
1071897--1071983	43	2.0	43	97	0	165	36	12	13	36	1.83
1077896--1077955	31	1.9	31	89	0	93	25	31	20	23	1.98
1080031--1080076	21	2.2	21	96	0	83	50	26	8	15	1.73
1084627--1084738	14	7.9	14	68	13	59	45	30	1	22	1.63
1085152--1085272	40	3.0	39	78	8	143	35	21	18	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085039--1085270	41	5.7	41	78	6	195	32	25	18	23	1.97
1094597--1094691	46	2.1	46	97	0	181	41	22	2	34	1.66
1097704--1097735	17	1.9	16	93	6	55	40	25	12	21	1.88
1099578--1099763	97	2.0	91	84	10	243	34	17	16	31	1.92
1102679--1102922	121	2.0	122	99	0	481	31	9	14	44	1.77
1104882--1104952	36	2.0	36	88	0	106	49	15	11	23	1.77
1106240--1106293	18	3.1	18	75	15	51	59	1	0	38	1.08
1108017--1108074	25	2.3	24	80	11	64	63	5	0	31	1.16
1109098--1109306	103	2.0	103	98	1	402	35	7	3	52	1.48
1111582--1111621	19	2.1	19	100	0	80	30	10	20	40	1.85
1113670--1113760	37	2.5	37	82	8	114	13	13	32	40	1.83
1119122--1119176	24	2.3	23	84	9	67	47	16	3	32	1.64
1121486--1121519	17	2.0	17	88	11	52	58	0	8	32	1.29
1121536--1121569	15	2.3	15	94	0	59	64	14	2	17	1.40
1121876--1121907	9	3.6	9	91	0	55	56	3	0	40	1.15
1125186--1125218	13	2.6	13	90	4	50	60	0	0	39	0.97
1131298--1131331	2	17.0	2	100	0	68	50	0	0	50	1.00
1131462--1131493	16	1.9	17	93	6	57	71	0	0	28	0.86
1133178--1133274	49	2.0	49	81	0	113	23	24	16	35	1.95
1137773--1138320	284	1.9	284	91	1	902	30	22	12	35	1.91
1140515--1140556	21	2.0	20	86	4	57	30	11	28	28	1.92
1144973--1145029	21	2.7	21	88	0	87	43	26	15	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1146066--1146120	28	2.0	28	85	7	76	38	3	1	56	1.28
1149152--1149197	17	2.7	17	89	0	65	36	13	13	36	1.83
1153705--1153743	11	3.9	10	80	12	53	71	2	0	25	0.98
1153705--1153741	20	1.9	20	94	5	67	72	2	0	24	0.97
1157051--1157078	12	2.3	12	100	0	56	92	0	7	0	0.37
1159977--1160175	46	4.4	46	93	1	312	32	16	22	29	1.95
1161781--1161967	93	2.0	94	98	1	367	31	6	13	48	1.68
1164221--1164259	19	2.0	20	90	5	62	28	0	25	46	1.53
1174873--1174979	54	2.0	54	98	0	205	25	14	25	34	1.94
1175773--1175802	15	2.0	15	93	0	51	60	10	6	23	1.52
1176159--1176205	22	2.2	22	77	7	53	55	2	6	36	1.37
1178096--1178342	45	5.6	45	70	14	142	27	23	20	28	1.99
1178141--1178465	130	2.5	129	92	4	532	28	22	20	28	1.99
1178002--1178513	44	11.8	44	75	10	360	27	22	20	29	1.98
1178521--1179344	268	3.1	267	89	1	1247	26	25	20	28	1.99
1180565--1180668	55	1.9	55	80	7	122	14	25	18	42	1.88
1191527--1191577	24	2.2	24	82	10	61	58	1	1	37	1.20
1197590--1197615	6	4.3	6	100	0	52	50	0	0	50	1.00
1202552--1202742	92	2.1	93	97	2	366	41	31	10	15	1.82
1206650--1206712	33	1.9	33	90	3	101	39	4	20	34	1.74
1224518--1224542	6	4.2	6	100	0	50	0	32	0	68	0.90
1232347--1232395	18	2.8	17	82	17	57	44	22	0	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1238809--1238853	20	2.4	19	82	10	58	73	4	8	13	1.23
1239049--1239124	21	3.7	21	87	7	120	36	11	10	40	1.76
1239062--1239125	19	3.3	19	93	4	101	37	14	9	39	1.78
1239461--1239766	44	7.0	45	73	15	198	26	23	19	29	1.99
1239424--1239904	217	2.2	217	88	2	711	27	23	19	29	1.98
1239471--1239804	44	7.7	43	73	15	169	27	23	20	27	1.99
1239787--1239892	43	2.4	43	80	7	117	32	19	19	28	1.97
1239880--1240206	132	2.5	132	94	1	566	24	24	22	29	1.99
1239972--1240194	44	5.1	44	70	6	164	25	26	19	29	1.99
1241441--1241469	6	4.8	6	100	0	58	0	13	0	86	0.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136