genome.fa.s10.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  97  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32478492--32478554	31	2.0	32	84	3	83	33	11	15	39	1.83
32483400--32483450	26	2.0	26	84	7	68	50	7	5	35	1.55
32484900--32484943	21	2.1	21	87	8	63	61	0	0	38	0.96
32484903--32484950	22	2.2	22	88	7	71	60	0	0	39	0.97
32489391--32489430	20	2.0	21	90	5	64	27	7	15	50	1.70
32509335--32509503	83	2.0	85	96	2	315	51	8	3	36	1.49
32517797--32517834	2	19.0	2	94	0	67	0	50	2	47	1.15
32523563--32523613	13	4.2	12	78	12	50	45	0	1	52	1.12
32523568--32523612	12	3.9	11	80	11	54	44	0	0	55	0.99
32529092--32529145	8	6.5	8	82	6	54	83	5	7	3	0.91
32529092--32529145	25	2.1	26	82	3	65	83	5	7	3	0.91
32531737--32531838	44	2.4	44	81	4	120	28	20	25	25	1.99
32531888--32531925	19	2.0	19	100	0	76	31	26	15	26	1.96
32532006--32532192	44	4.2	44	68	13	139	28	21	22	26	1.99
32531670--32532129	237	1.9	237	95	0	841	30	20	22	26	1.98
32532339--32532910	40	13.7	40	78	11	542	32	23	20	23	1.98
32532332--32532974	171	3.8	170	87	5	864	33	23	19	23	1.97
32532334--32532932	83	7.1	83	81	7	728	32	23	20	23	1.98
32535184--32535387	111	1.8	110	89	3	320	31	16	19	32	1.94
32538147--32538177	13	2.5	13	94	5	55	16	0	0	83	0.64
32538147--32538177	6	5.0	6	92	7	53	16	0	0	83	0.64
32539065--32539121	30	1.9	30	88	0	87	42	5	1	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32547288--32547541	44	5.7	43	72	12	158	28	22	24	24	2.00
32547336--32547852	44	11.8	46	71	9	192	29	20	24	26	1.99
32547295--32547572	133	2.1	133	93	1	477	28	23	23	24	1.99
32547295--32547624	133	2.5	133	87	2	430	29	21	23	25	1.99
32547440--32547857	217	1.9	218	87	2	617	29	19	24	26	1.99
32553496--32553529	3	11.3	3	93	0	59	38	0	0	61	0.96
32558737--32558763	14	1.9	14	100	0	54	25	7	14	51	1.68
32559662--32559695	16	2.2	16	89	5	52	70	8	5	14	1.31
32560678--32560770	4	23.5	4	94	2	161	25	2	24	47	1.63
32560810--32560858	12	4.1	12	89	0	62	26	8	24	40	1.83
32560818--32560858	4	10.2	4	89	0	64	26	4	24	43	1.74
32560887--32560964	4	19.5	4	100	0	156	24	0	25	50	1.50
32563626--32563681	18	3.1	18	84	7	78	14	5	1	78	1.00
32563631--32563681	6	8.5	6	74	8	50	15	3	1	78	0.99
32568683--32568959	27	10.2	27	82	4	299	40	25	15	19	1.90
32569418--32569473	17	3.4	16	76	11	51	35	0	5	58	1.21
32569420--32569472	22	2.4	22	78	12	54	35	0	5	58	1.22
32570141--32570187	16	2.8	16	93	6	76	27	0	8	63	1.23
32570422--32570510	21	4.2	20	75	11	70	26	1	23	48	1.58
32570422--32570623	7	28.6	7	72	11	54	22	0	34	42	1.58
32570437--32570630	14	13.7	14	72	7	88	21	0	34	43	1.57
32570561--32570607	21	2.2	22	85	11	62	14	0	42	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32581576--32581619	3	14.7	3	85	0	61	34	0	2	63	1.07
32583269--32583323	28	2.0	27	92	3	92	21	23	25	29	1.99
32583225--32583355	33	4.1	33	74	15	105	24	25	23	26	2.00
32585511--32585636	42	2.9	44	77	10	136	32	25	17	24	1.97
32594568--32594620	25	2.1	26	89	3	81	50	13	16	18	1.77
32597294--32597318	13	1.9	13	100	0	50	8	0	24	68	1.16
32598208--32598431	114	2.0	114	100	0	448	40	2	14	43	1.57
32598540--32598569	6	5.0	6	100	0	60	66	16	0	16	1.25
32598784--32598933	41	3.7	41	88	0	210	30	17	27	25	1.97
32604289--32604322	17	2.0	17	88	11	52	14	32	29	23	1.94
32608031--32608085	24	2.3	24	87	0	83	32	14	29	23	1.94
32607993--32608162	25	6.9	25	73	9	82	32	20	27	19	1.96
32610400--32610438	16	2.4	16	86	4	51	33	10	12	43	1.77
32611524--32611567	22	2.0	22	91	8	72	50	9	2	38	1.47
32623658--32623711	22	2.5	20	77	13	54	59	12	1	25	1.44
32625229--32625259	14	2.2	14	100	0	62	48	0	19	32	1.49
32630528--32630559	4	7.8	4	96	3	55	21	0	3	75	0.95
32630694--32631214	110	4.8	110	85	6	647	28	17	20	33	1.95
32637291--32637430	76	1.9	75	90	4	228	43	7	9	40	1.64
32647619--32647683	31	2.1	31	85	2	85	53	9	12	24	1.67
32647637--32647703	29	2.2	28	80	17	73	52	8	11	26	1.68
32650062--32650131	32	2.2	32	97	0	131	32	20	27	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32652495--32652560	3	22.0	3	96	0	123	66	1	0	31	1.01
32653598--32653639	20	2.0	21	82	13	52	7	4	35	52	1.50
32654161--32654698	175	3.1	175	92	1	859	28	20	20	30	1.98
32654179--32654690	87	5.9	86	76	9	475	27	21	19	31	1.97
32654410--32654868	218	2.1	219	88	2	672	28	21	20	30	1.98
32654181--32654868	44	15.7	43	69	9	288	28	21	19	30	1.97
32656057--32656099	7	6.0	7	84	15	61	13	13	0	72	1.13
32656057--32656101	22	2.0	22	95	4	81	13	13	0	73	1.10
32656059--32656092	16	2.1	16	100	0	68	11	11	0	76	1.02
32657057--32657125	22	3.1	22	77	12	70	8	8	5	76	1.14
32665229--32665324	45	2.2	44	85	9	133	37	28	3	31	1.73
32665310--32665358	16	3.1	16	87	0	80	22	34	4	38	1.73
32674941--32674983	20	2.2	19	80	8	50	53	9	2	34	1.46
32682961--32682988	14	2.0	14	100	0	56	21	0	7	71	1.09
32700974--32701005	3	10.7	3	100	0	64	31	0	0	68	0.90
32701136--32701223	18	4.9	18	76	20	94	37	1	1	60	1.12
32702118--32702155	18	2.1	18	90	9	60	34	15	18	31	1.92
32704732--32704759	12	2.3	12	100	0	56	53	17	7	21	1.67
32706363--32706393	2	15.5	2	100	0	62	51	0	0	48	1.00
32710831--32710905	34	2.1	36	87	7	109	57	9	18	14	1.64
32710771--32710981	114	1.8	117	83	7	286	52	16	12	18	1.75
32715034--32715089	21	2.7	21	88	0	85	28	32	8	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32719654--32719696	18	2.4	18	84	0	59	46	6	39	6	1.58
32720190--32720357	84	2.0	85	80	1	194	25	16	22	36	1.94
32727555--32727594	19	2.2	18	90	4	62	15	27	5	52	1.63
32729811--32729990	91	2.0	89	87	2	261	35	16	20	28	1.94
32731987--32732028	16	2.5	17	88	3	59	7	4	35	52	1.50
32732421--32732777	44	8.1	44	66	9	120	28	23	19	29	1.98
32732391--32732791	132	3.0	132	88	2	583	28	23	18	29	1.98
32732850--32733129	133	2.1	133	91	0	452	27	24	20	28	1.99
32741489--32741530	16	2.5	17	84	7	59	7	4	35	52	1.50
32744545--32744625	42	1.9	42	92	0	135	32	12	16	39	1.85
32748123--32748155	17	1.9	17	100	0	66	42	9	0	48	1.35
32753235--32753269	14	2.4	15	85	4	54	37	8	0	54	1.31
32763529--32763590	31	2.0	31	96	0	115	40	9	3	46	1.53
32766927--32766990	3	22.0	3	87	6	51	56	0	42	1	1.09
32771495--32771570	17	4.5	18	69	14	63	68	1	1	28	1.06
32771487--32771567	20	4.2	19	75	12	76	65	2	1	30	1.13
32771492--32771568	10	7.8	10	71	18	63	67	1	1	29	1.07
32771492--32771572	18	4.3	18	72	9	54	69	1	1	28	1.04
32771578--32771626	25	2.0	24	88	4	71	57	4	0	38	1.18
32773102--32773153	24	2.4	21	77	20	61	42	3	1	51	1.31
32773109--32773154	24	2.0	23	91	4	74	43	4	2	50	1.34
32786719--32786749	15	2.1	15	93	0	53	35	29	6	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32789256--32789646	192	2.0	191	99	0	764	35	9	11	44	1.73
32791884--32792009	44	2.8	46	78	9	132	31	20	23	23	1.98
32794760--32795319	205	2.7	205	91	1	924	36	15	15	32	1.89
32798956--32798981	6	4.3	6	100	0	52	0	0	46	53	1.00
32811424--32811456	15	2.2	15	89	10	50	63	0	0	36	0.95
32812937--32812971	8	4.4	8	100	0	70	54	0	0	45	0.99
32812937--32812980	16	2.8	16	89	6	54	54	0	2	43	1.12
32814678--32814759	26	3.2	26	98	0	155	23	32	12	31	1.91
32817945--32817993	20	2.3	21	80	16	57	57	2	6	34	1.35
32817997--32818130	38	3.6	38	80	6	114	44	4	11	39	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136