genome.fa.s10.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  89  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29603786--29603936	76	2.0	76	93	0	257	25	14	33	25	1.94
29605507--29605692	31	6.1	31	83	7	238	29	8	17	45	1.76
29612918--29613063	31	4.7	31	86	4	181	28	7	17	46	1.75
29612907--29613063	62	2.5	61	87	4	208	28	7	17	47	1.73
29615855--29615944	3	30.0	3	88	0	108	34	3	1	61	1.20
29615845--29615898	27	2.0	27	88	0	81	44	9	1	44	1.46
29615848--29615895	24	2.0	24	95	0	87	43	8	2	45	1.45
29616321--29616374	26	2.1	26	86	3	74	22	7	0	70	1.12
29623094--29623130	18	2.1	18	90	5	58	37	21	0	40	1.54
29628577--29628648	34	2.1	34	82	5	83	54	13	2	29	1.54
29635813--29635912	49	2.0	49	100	0	200	42	18	8	32	1.79
29640439--29640485	9	5.2	9	77	10	51	0	21	10	68	1.20
29640439--29640485	18	2.6	18	77	12	60	0	21	10	68	1.20
29642650--29642754	53	2.0	53	100	0	210	28	15	13	42	1.84
29644632--29644747	57	2.0	58	96	3	216	32	22	18	25	1.97
29645479--29645503	12	2.1	12	100	0	50	40	16	0	44	1.47
29650695--29650789	42	2.3	42	84	0	127	40	15	24	20	1.91
29658974--29659013	21	1.9	21	90	10	64	30	30	0	40	1.57
29660155--29660227	36	2.0	36	84	10	96	32	4	8	54	1.49
29662732--29662760	5	5.8	5	100	0	58	41	0	0	58	0.98
29663513--29663576	30	2.1	30	94	0	110	32	0	21	45	1.52
29663581--29663612	15	2.1	16	94	5	57	46	0	9	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29663781--29663830	22	2.3	22	82	0	64	12	30	18	40	1.86
29665427--29665498	25	2.9	25	95	0	135	16	16	25	41	1.89
29665497--29665564	22	3.1	22	93	0	109	17	26	14	41	1.88
29669414--29669452	5	8.0	5	94	5	71	41	0	0	58	0.98
29670243--29670305	25	2.5	25	89	0	108	17	17	20	44	1.87
29670318--29670360	22	2.0	22	100	0	86	16	27	18	37	1.92
29670454--29670508	18	3.3	18	63	31	50	50	1	21	25	1.58
29676801--29676892	46	2.0	45	82	2	112	43	18	10	27	1.83
29677402--29677506	42	2.5	42	74	10	106	14	31	24	29	1.94
29678218--29678270	20	2.6	21	82	17	67	75	0	13	11	1.05
29678905--29678953	14	3.3	15	77	8	55	81	14	0	4	0.83
29680239--29680388	63	2.4	63	84	5	178	25	9	1	64	1.32
29690209--29690242	18	1.9	18	88	5	52	11	11	5	70	1.32
29704162--29704197	18	2.0	18	88	0	54	66	16	0	16	1.25
29705772--29706536	43	17.8	43	78	4	765	31	25	15	27	1.96
29705746--29706546	129	6.2	129	94	0	1352	31	24	15	28	1.96
29710683--29710754	24	3.0	24	87	2	108	40	8	30	20	1.82
29710875--29710936	21	3.0	21	70	0	70	16	29	17	37	1.92
29710804--29710959	42	3.7	42	77	0	134	17	26	16	39	1.90
29719288--29719312	4	6.2	4	100	0	50	24	0	0	76	0.80
29720611--29720647	18	2.0	19	89	5	58	29	2	5	62	1.31
29733396--29733439	19	2.5	17	81	7	52	61	4	9	25	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29737188--29737330	21	6.9	21	75	7	103	20	16	16	46	1.84
29737188--29737235	20	2.3	20	85	3	60	22	16	16	43	1.87
29737187--29737336	42	3.6	43	78	2	137	19	15	17	48	1.82
29737283--29737342	21	2.8	20	80	9	66	16	11	18	53	1.72
29737283--29737351	21	3.3	20	74	8	57	17	13	18	50	1.77
29742382--29742435	27	2.0	27	92	0	90	46	9	7	37	1.64
29743180--29743256	9	8.4	9	83	8	93	22	10	25	41	1.85
29743417--29743441	12	2.1	12	100	0	50	16	24	36	24	1.94
29751003--29751037	18	1.9	18	88	11	54	37	8	20	34	1.83
29754035--29754067	17	1.9	17	100	0	66	78	9	0	12	0.95
29760123--29760156	11	3.1	11	91	0	59	17	32	2	47	1.63
29760119--29760172	22	2.5	22	83	16	69	20	29	3	46	1.68
29760136--29760231	49	1.9	50	85	8	133	26	23	3	46	1.67
29760260--29760296	13	2.8	14	84	12	51	40	43	0	16	1.48
29760260--29760292	7	5.0	7	96	3	52	39	45	0	15	1.46
29760281--29760379	22	4.6	22	88	7	150	45	31	0	23	1.53
29760281--29760377	44	2.2	44	94	5	171	45	31	0	22	1.53
29760287--29760397	22	4.8	22	82	9	116	46	29	0	23	1.52
29760397--29760438	21	2.0	22	85	4	59	50	35	0	14	1.43
29760477--29760554	40	2.0	40	86	0	111	25	30	25	17	1.97
29763076--29763210	40	3.4	40	76	8	125	37	19	23	20	1.95
29763442--29763570	14	9.1	14	68	17	54	22	0	41	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29763464--29763510	22	2.2	22	92	3	78	21	0	38	40	1.53
29763516--29763570	15	3.6	15	81	18	69	20	0	49	30	1.49
29764267--29764333	20	3.2	21	73	14	59	44	7	0	47	1.31
29764281--29764335	23	2.5	22	80	8	60	49	7	0	43	1.30
29769250--29769406	43	3.7	42	77	6	154	21	19	30	28	1.98
29770151--29770225	30	2.5	30	86	0	105	33	13	17	36	1.88
29775117--29775168	24	2.2	24	89	0	77	36	3	9	50	1.54
29779530--29779581	24	2.2	24	92	0	86	36	1	9	51	1.46
29779843--29779976	67	2.0	67	100	0	268	31	11	13	43	1.80
29779861--29779965	33	3.2	33	62	22	83	32	12	11	43	1.78
29788388--29788452	2	32.5	2	96	0	121	1	49	0	49	1.10
29793147--29793174	14	2.0	14	100	0	56	28	14	21	35	1.92
29795151--29795196	20	2.1	23	84	11	62	54	2	2	41	1.25
29795635--29795674	19	2.1	19	85	4	53	30	2	0	67	1.04
29800749--29800793	20	2.2	21	92	4	74	60	2	2	35	1.22
29800749--29800812	19	3.3	19	80	8	67	57	1	4	35	1.29
29800832--29800888	29	2.0	29	89	6	89	71	3	1	22	1.10
29811139--29811209	35	2.0	35	97	0	133	33	12	5	47	1.65
29814330--29814366	2	18.5	2	94	0	65	51	45	0	2	1.15
29814329--29814372	10	4.4	10	91	0	61	50	40	0	9	1.34
29814364--29814396	16	2.1	16	94	0	57	51	15	0	33	1.43
29822474--29822572	42	2.4	42	87	0	144	37	20	21	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29822576--29822829	43	6.0	42	92	2	373	27	18	18	34	1.95
29822572--29822828	85	3.0	84	91	1	388	27	19	19	34	1.95
29850736--29850822	42	2.1	42	85	8	115	16	22	18	42	1.89
29852961--29853055	27	3.6	27	75	12	90	60	6	5	28	1.43
29852973--29853125	53	3.0	51	74	17	138	56	5	9	28	1.52
29853031--29853076	22	2.1	22	88	4	67	63	2	4	30	1.26
29853035--29853082	22	2.2	22	81	7	53	62	2	6	29	1.31
29864368--29864429	21	3.0	21	75	0	79	14	24	19	41	1.88
29864324--29864429	42	2.5	42	87	6	144	15	24	17	42	1.88
29864595--29864654	25	2.4	25	97	0	111	38	3	0	58	1.15
29870835--29870892	29	2.0	29	80	12	66	37	13	10	37	1.79
29880835--29880867	11	3.1	11	86	4	50	36	0	0	63	0.95
29883392--29883424	11	3.1	11	86	4	50	36	0	0	63	0.95
29883546--29883608	30	2.1	30	93	0	108	57	14	3	25	1.52
29883642--29883668	14	1.9	14	100	0	54	51	14	11	22	1.73
29888354--29888386	3	11.0	3	93	0	57	66	3	0	30	1.06
29889836--29889948	44	2.6	44	85	2	138	30	25	15	27	1.96
29890123--29890350	125	1.8	125	93	0	393	24	17	22	35	1.95
29890428--29890601	50	3.6	50	83	5	207	26	20	22	31	1.98
29890252--29890566	100	3.2	98	79	4	335	23	19	23	33	1.97
29892088--29892190	43	2.4	44	82	11	124	29	23	15	32	1.95
29892267--29892305	15	2.7	15	92	4	62	0	12	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29892268--29892310	20	2.2	19	87	4	59	0	11	2	86	0.67
29892267--29892302	8	4.6	8	86	6	56	0	13	0	86	0.58
29893467--29893515	6	8.0	6	86	13	73	0	18	0	81	0.69
29893527--29893582	9	6.3	9	87	4	87	10	0	10	78	0.96
29893527--29893581	17	3.2	17	87	5	83	10	0	10	78	0.98
29893527--29893581	8	6.4	8	85	10	65	10	0	10	78	0.98
29897667--29897702	3	12.0	3	100	0	72	66	0	0	33	0.92
29898050--29898248	100	2.0	101	93	1	346	20	26	31	22	1.98
29900981--29901035	25	2.2	24	81	6	65	58	0	5	36	1.21
29900994--29901042	25	2.0	25	84	8	64	57	0	2	40	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136