genome.fa.s10.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  33  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10664278--10664342	4	16.2	4	96	0	103	29	20	0	50	1.48
10672311--10672344	17	2.0	17	100	0	68	35	0	23	41	1.55
10674457--10674496	17	2.4	17	91	0	62	32	30	12	25	1.92
10680619--10680687	37	1.9	35	82	11	86	34	1	1	62	1.13
10681920--10681984	32	2.0	32	96	0	121	36	18	9	35	1.83
10700915--10700949	18	1.9	18	88	0	52	28	0	2	68	1.04
10702113--10702144	12	2.7	12	90	0	55	31	12	15	40	1.85
10704429--10704456	3	9.3	3	100	0	56	0	32	0	67	0.91
10706906--10707079	87	2.0	89	89	2	271	35	12	21	30	1.91
10710088--10710217	35	3.7	35	76	8	129	29	23	16	30	1.97
10710071--10710217	70	2.1	70	87	0	204	27	23	17	31	1.97
10711682--10711740	30	2.0	30	93	0	100	16	30	27	25	1.97
10736437--10736476	19	2.1	20	86	9	57	42	2	37	17	1.63
10738157--10738229	29	2.5	29	84	4	94	36	15	31	16	1.90
10738195--10738295	53	1.9	53	93	0	175	28	17	29	23	1.97
10738261--10738400	30	4.7	31	77	8	112	37	10	26	25	1.88
10738248--10738430	60	3.1	59	73	3	168	36	12	27	24	1.91
10738248--10738430	90	2.0	90	80	4	199	36	12	27	24	1.91
10738268--10738460	30	6.4	30	75	3	104	36	11	26	25	1.90
10746203--10746247	20	2.2	20	96	0	81	22	22	24	31	1.99
10747970--10748009	5	8.0	5	94	0	71	57	22	0	20	1.41
10749991--10750027	19	1.9	19	88	0	56	37	2	0	59	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10753255--10753287	15	2.1	16	88	5	50	48	0	3	48	1.17
10753767--10753799	17	1.9	18	88	11	52	45	0	0	54	0.99
10762172--10762213	8	4.9	8	83	16	57	73	0	0	26	0.83
10762173--10762212	10	4.3	10	81	12	50	77	0	0	22	0.77
10763591--10763633	21	2.0	21	91	8	70	60	0	6	32	1.23
10763604--10763641	15	2.5	15	76	16	51	65	0	2	31	1.06
10773471--10773499	12	2.4	12	100	0	58	27	0	0	72	0.85
10784081--10784156	27	2.8	27	87	0	116	21	26	17	35	1.95
10788465--10788491	13	2.1	13	100	0	54	37	14	22	25	1.93
10789255--10789284	15	2.0	15	93	0	51	53	6	16	23	1.66
10793232--10793389	79	2.0	79	94	0	280	47	12	13	27	1.78
10794019--10794068	19	2.7	19	93	3	84	32	16	0	52	1.44
10796518--10796554	18	2.1	18	89	0	56	29	35	5	29	1.80
10800666--10800796	57	2.2	57	81	9	140	48	5	19	26	1.71
10803383--10804031	320	2.0	320	92	0	1084	30	13	19	36	1.90
10810443--10810495	21	2.5	21	81	0	61	33	11	32	22	1.90
10810951--10810985	17	2.1	17	88	0	52	25	14	5	54	1.62
10814153--10814179	9	3.0	9	100	0	54	11	22	33	33	1.89
10824758--10824783	1	26.0	1	100	0	52	0	0	100	0	0.00
10834986--10835022	18	2.1	18	89	0	56	45	0	0	54	1.00
10842784--10842856	23	3.2	23	82	7	103	34	26	16	23	1.95
10843566--10843800	117	2.0	118	98	0	454	42	16	8	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10851262--10851302	21	2.0	21	85	0	55	26	19	26	26	1.99
10855975--10856013	5	8.0	5	91	5	53	74	0	0	25	0.82
10855975--10856013	14	2.7	15	84	8	53	74	0	0	25	0.82
10855977--10856013	19	1.9	19	88	0	56	75	0	0	24	0.80
10856003--10856794	395	2.0	396	99	0	1577	40	14	9	34	1.80
10865998--10866174	44	4.0	44	100	0	354	29	18	16	36	1.92
10872459--10872541	30	2.8	29	78	14	87	34	26	2	36	1.70
10883788--10883817	15	2.0	15	93	0	51	66	10	6	16	1.41
10884924--10885905	491	2.0	491	100	0	1964	35	13	19	31	1.90
10885944--10885999	17	3.4	17	97	2	105	39	5	5	50	1.48
10888433--10888474	3	14.0	3	100	0	84	33	0	0	66	0.92
10897614--10897680	9	7.4	9	83	9	75	43	22	7	26	1.80
10897614--10897680	27	2.5	27	83	9	100	43	22	7	26	1.80
10900487--10900677	56	3.4	55	87	2	240	45	14	10	30	1.78
10901497--10901540	18	2.4	18	81	7	54	15	2	40	40	1.60
10911633--10911693	30	2.0	31	87	9	90	37	0	42	19	1.52
10911821--10911855	18	1.9	18	100	0	70	37	17	11	34	1.85
10912486--10912528	15	2.9	14	80	13	50	55	2	4	37	1.33
10916082--10916109	12	2.3	12	100	0	56	7	21	42	28	1.79
10917282--10917349	25	2.7	25	81	0	91	26	25	23	25	2.00
10924822--10924854	16	2.1	16	100	0	66	57	0	36	6	1.23
10931049--10931080	5	6.4	5	92	0	55	62	21	0	15	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10931423--10931465	21	2.0	22	86	4	61	32	0	18	48	1.48
10940614--10940671	29	2.0	30	96	3	109	31	15	10	43	1.80
10942950--10943486	44	12.2	44	65	15	193	30	18	24	25	1.98
10942938--10943436	132	3.8	132	91	1	768	30	18	25	25	1.98
10942938--10943521	264	2.2	264	84	4	698	30	18	24	25	1.98
10943427--10943538	44	2.6	43	81	8	129	29	21	20	28	1.98
10943941--10943972	5	6.4	5	92	0	55	62	21	0	15	1.32
10944211--10944362	76	2.0	76	97	0	286	23	27	32	15	1.95
10944569--10944612	21	2.0	21	82	4	52	29	0	18	52	1.46
10945483--10945674	98	2.0	98	93	0	330	27	10	25	36	1.88
10961200--10961248	22	2.2	22	82	7	55	24	18	2	55	1.53
10961768--10961802	18	1.9	18	88	11	54	31	11	0	57	1.34
10964692--10964730	18	2.2	18	85	0	51	25	5	7	61	1.44
10982132--10982240	51	2.1	51	100	0	218	29	33	10	27	1.89
10985055--10985596	270	2.0	273	90	1	867	26	17	12	43	1.85
10990071--10990102	12	2.7	12	95	0	55	68	9	3	18	1.30
10996665--10996708	19	2.3	19	88	7	63	25	2	2	70	1.10
10996756--10996806	26	2.0	26	84	7	68	29	5	1	62	1.29
11007676--11007830	77	2.0	77	92	0	256	34	25	7	32	1.84
11010386--11010429	18	2.2	21	80	11	58	70	0	4	25	1.06
11010908--11011120	94	2.3	94	82	4	250	18	25	28	26	1.98
11020769--11020844	39	1.9	39	89	0	116	39	15	15	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11030729--11030970	50	4.7	50	81	4	200	28	20	27	23	1.99
11030886--11031012	49	2.6	49	89	2	184	31	19	24	24	1.98
11031222--11031260	20	2.0	20	89	0	60	56	2	25	15	1.52
11044207--11044255	25	2.0	25	83	0	62	36	12	18	32	1.88
11053539--11053613	35	2.1	35	95	0	132	37	33	8	21	1.83
11061067--11061120	27	2.0	28	96	3	101	33	16	14	35	1.90
11061535--11061573	16	2.4	16	95	0	69	38	5	35	20	1.75
11062122--11062186	32	2.0	32	93	0	112	38	9	13	38	1.77
11064174--11064198	13	1.9	13	100	0	50	32	8	40	20	1.81
11069273--11069317	23	2.0	23	86	0	63	62	11	2	24	1.40
11080128--11080300	93	1.9	92	81	6	215	28	26	23	21	1.99
11083320--11083365	21	2.2	21	88	7	67	76	0	8	15	1.02
11086597--11086623	6	4.5	6	100	0	54	14	0	0	85	0.61
11092968--11093008	17	2.3	19	91	8	68	65	0	2	31	1.05
11095066--11095108	21	2.0	21	86	8	61	46	11	6	34	1.67
11095567--11095726	45	3.6	45	75	6	139	19	18	19	42	1.89
11096247--11096284	20	1.9	20	89	10	60	42	18	0	39	1.50
11104955--11105137	45	4.1	45	84	2	237	20	16	27	34	1.94
11104955--11105131	89	2.0	88	86	3	248	20	16	28	34	1.94
11109068--11109806	370	2.0	368	95	0	1343	35	15	14	34	1.89
11112986--11113051	29	2.4	27	81	16	75	54	1	3	40	1.25
11119788--11119821	18	2.0	16	88	11	50	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11122837--11122902	29	2.2	29	86	2	87	28	28	31	10	1.90
11123769--11123809	20	2.0	20	85	0	55	36	17	7	39	1.77
11127265--11127364	50	2.0	50	100	0	200	34	10	22	34	1.87
11130898--11130949	24	2.2	24	89	0	77	55	9	1	32	1.43
11132705--11132756	24	2.2	24	89	0	77	55	9	1	32	1.43
11136130--11136176	21	2.2	21	88	0	67	21	14	36	27	1.93
11142712--11142742	2	15.5	2	100	0	62	51	0	0	48	1.00
11144458--11144504	16	2.8	16	83	6	58	70	0	27	2	0.99
11144463--11144505	21	2.0	21	86	8	61	67	0	32	0	0.91
11145314--11145440	27	4.7	27	76	7	123	29	25	17	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136