genome.fa.s10.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  23  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7166131--7166319	91	2.1	91	85	2	263	43	12	11	32	1.78
7167354--7167489	66	2.1	65	95	1	245	27	19	14	37	1.91
7182518--7182548	5	6.2	5	100	0	62	19	0	0	80	0.71
7186852--7186937	43	2.0	43	88	0	127	54	0	20	24	1.45
7188359--7188452	49	1.9	49	91	0	152	43	8	24	23	1.81
7189924--7189988	21	3.1	21	70	16	55	58	9	1	30	1.39
7191667--7191719	13	4.1	13	80	9	72	30	7	26	35	1.84
7191554--7191766	91	2.3	90	74	16	211	28	6	25	39	1.79
7196505--7196615	55	2.0	55	100	0	222	30	7	29	32	1.84
7198893--7198971	31	2.5	30	86	8	104	30	15	10	44	1.79
7199165--7199210	24	2.0	23	86	4	65	28	4	2	65	1.23
7199615--7199704	30	2.9	31	75	15	105	56	8	4	30	1.50
7200053--7200139	19	4.7	19	70	23	78	29	10	13	45	1.77
7200033--7200154	54	2.3	55	89	2	194	31	9	16	41	1.81
7203522--7203588	26	2.6	25	79	11	64	17	5	2	73	1.17
7203526--7203597	12	5.9	12	75	16	60	18	5	2	73	1.15
7215308--7215635	51	6.8	49	67	18	172	31	18	20	29	1.96
7215453--7215763	50	6.4	49	68	15	150	31	20	19	27	1.97
7215320--7215590	94	2.9	93	78	9	293	32	17	21	29	1.96
7215451--7215763	145	2.2	145	91	0	502	32	20	19	27	1.97
7216441--7216486	2	23.5	2	91	4	67	43	2	0	54	1.12
7217230--7217405	79	2.2	79	100	0	352	26	9	3	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7217613--7217662	21	2.2	23	83	16	61	22	12	6	60	1.53
7220715--7220751	20	2.0	20	84	10	51	27	0	5	67	1.12
7221061--7221101	21	1.9	22	85	5	57	39	17	2	41	1.62
7224224--7224300	35	2.2	36	79	11	88	23	11	33	31	1.91
7224271--7224315	21	2.1	21	84	8	56	28	6	33	31	1.83
7224276--7224331	21	2.7	21	81	8	53	32	10	26	30	1.90
7237805--7237873	25	2.8	24	78	6	75	15	26	18	39	1.91
7241540--7241579	21	1.9	21	84	0	53	47	5	2	45	1.38
7242273--7242312	19	2.2	19	86	13	57	17	5	0	77	0.94
7243853--7243877	13	1.9	13	100	0	50	12	0	0	88	0.53
7247546--7247938	212	1.8	213	85	2	558	31	25	16	26	1.96
7247762--7248343	238	2.4	238	83	3	704	32	23	16	28	1.96
7248563--7248642	29	2.9	26	77	14	79	60	2	3	33	1.28
7249206--7249262	25	2.3	25	77	14	64	31	3	3	61	1.30
7255298--7255482	69	2.7	69	98	0	352	36	12	18	32	1.88
7261915--7262044	25	5.3	25	73	7	104	36	20	23	20	1.95
7262029--7262158	25	5.2	24	71	18	88	35	23	23	17	1.95
7261973--7262160	74	2.6	76	77	11	212	36	22	22	18	1.95
7262096--7262159	26	2.5	26	82	2	76	37	23	21	17	1.94
7261978--7262179	24	8.1	26	71	11	113	35	21	24	18	1.95
7264683--7264749	26	2.6	27	86	9	95	32	25	26	14	1.95
7264688--7264765	26	3.0	25	75	14	70	35	24	24	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7265369--7265422	28	2.0	28	85	3	74	33	14	5	46	1.68
7265833--7265892	29	2.1	29	96	0	111	18	28	11	41	1.85
7269759--7269815	21	2.6	21	75	10	53	63	1	1	33	1.15
7270804--7270876	24	3.0	23	68	9	58	39	2	0	57	1.13
7274923--7274994	19	3.8	20	72	17	57	61	1	0	37	1.05
7274924--7274992	9	7.4	9	76	11	68	62	1	0	36	1.04
7274924--7274997	28	2.7	27	80	14	71	60	1	0	37	1.05
7275358--7275392	9	4.1	8	89	10	52	62	2	0	34	1.10
7291402--7291444	20	2.2	20	83	8	52	44	20	0	34	1.52
7296478--7296580	36	2.8	37	78	7	113	38	10	20	30	1.86
7296894--7297010	50	2.3	50	82	0	153	28	18	30	22	1.97
7299978--7300542	281	2.0	282	99	0	1123	49	8	6	36	1.58
7310325--7310365	20	2.0	21	95	4	75	51	19	14	14	1.77
7310593--7310666	31	2.4	31	90	0	112	39	6	0	54	1.27
7315617--7315677	11	5.5	11	80	5	70	22	29	1	45	1.62
7315617--7315677	22	2.8	22	87	5	88	22	29	1	45	1.62
7315617--7315679	33	1.9	33	87	6	92	23	28	1	46	1.62
7315735--7315769	13	2.8	12	91	8	61	40	0	0	60	0.97
7317526--7317568	18	2.4	18	88	0	59	18	27	9	44	1.80
7319202--7319609	121	3.3	122	89	5	597	30	20	17	31	1.95
7324197--7324394	95	2.1	96	98	1	382	35	7	15	41	1.74
7324762--7324788	10	2.7	10	100	0	54	88	11	0	0	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7325260--7325294	15	2.2	16	90	5	54	25	0	20	54	1.45
7332457--7332494	14	2.5	16	87	8	53	39	7	5	47	1.55
7332564--7332605	18	2.3	18	87	4	57	52	2	0	45	1.13
7332576--7332617	18	2.3	19	84	12	61	35	4	0	59	1.19
7334267--7334335	22	3.1	22	81	4	68	42	15	21	20	1.89
7335401--7335457	25	2.4	24	88	5	80	1	26	19	52	1.55
7337267--7337314	18	2.7	18	93	0	78	35	14	12	37	1.84
7337480--7337990	253	2.0	253	94	0	905	30	13	19	36	1.91
7337951--7338113	72	2.3	71	89	3	247	24	4	13	57	1.56
7339851--7339916	30	2.2	28	82	12	80	54	1	1	42	1.18
7339851--7339916	28	2.2	30	82	12	84	54	1	1	42	1.18
7340082--7340142	13	4.7	13	85	0	59	37	24	8	29	1.84
7340079--7340142	26	2.5	26	81	0	83	35	23	7	32	1.84
7343718--7343788	27	2.7	26	79	10	74	22	29	16	30	1.96
7344486--7344861	191	2.0	191	97	0	707	39	22	5	32	1.77
7351440--7351470	16	1.9	16	93	0	53	51	6	0	41	1.27
7353147--7353174	6	4.7	6	100	0	56	32	0	50	17	1.47
7353298--7353338	17	2.5	17	92	4	66	24	4	34	36	1.77
7356891--7357016	41	2.9	43	79	10	125	30	27	18	23	1.97
7364959--7364990	15	2.1	15	94	0	55	46	12	18	21	1.82
7370630--7370674	24	2.0	23	86	8	65	42	0	2	55	1.12
7383127--7383188	29	2.1	29	82	5	72	29	4	0	66	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7385799--7386017	38	5.6	40	76	9	216	33	21	16	27	1.96
7385799--7386017	78	2.8	78	92	0	348	33	21	16	27	1.96
7389767--7389815	19	2.7	17	78	9	53	53	0	2	44	1.12
7392135--7392199	34	1.9	34	87	0	94	21	10	21	46	1.82
7392051--7392377	55	5.7	55	68	17	182	23	8	17	50	1.73
7392260--7392379	53	2.2	54	86	5	163	25	8	17	49	1.74
7400420--7400452	17	1.9	17	93	0	57	36	3	12	48	1.56
7402035--7402094	23	2.6	24	76	7	70	40	16	10	33	1.82
7402054--7402123	23	3.0	23	80	2	86	42	17	11	28	1.83
7404548--7404583	19	1.9	18	88	5	54	36	2	2	58	1.27
7410752--7410782	14	2.2	14	100	0	62	35	29	0	35	1.58
7417046--7417112	29	2.2	29	84	5	80	31	11	13	43	1.80
7417067--7417125	29	2.0	30	90	3	93	28	8	15	47	1.74
7424866--7425901	394	2.6	399	83	5	1230	36	15	11	37	1.83
7425798--7426046	133	1.9	133	90	1	401	36	13	8	40	1.76
7425908--7426565	329	2.0	329	88	0	969	35	14	12	37	1.84
7426234--7427180	404	2.3	403	86	2	1324	34	13	12	38	1.83
7426815--7427529	365	2.0	365	83	2	927	36	13	12	37	1.82
7427180--7429919	404	6.9	402	84	4	3293	35	14	12	37	1.84
7427180--7431160	808	5.0	802	81	6	4386	35	14	12	38	1.84
7428022--7431100	404	7.8	385	80	7	2906	34	14	12	38	1.84
7431153--7432565	402	3.5	399	83	5	1667	35	13	12	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7434635--7434664	2	15.0	2	100	0	60	50	0	0	50	1.00
7440911--7441105	60	3.1	60	63	16	151	33	7	5	52	1.53
7440847--7441105	128	2.0	129	99	0	511	34	6	5	54	1.48
7442151--7442184	18	1.9	18	88	5	52	29	0	5	64	1.17
7442241--7442316	18	4.4	17	73	16	66	72	0	0	27	0.85
7442240--7442315	25	3.1	26	76	12	72	73	0	0	26	0.83
7442238--7442307	17	4.1	17	74	17	63	72	0	0	27	0.84
7448028--7448059	9	3.6	9	95	0	55	25	12	25	37	1.91
7448028--7448067	18	2.2	18	86	0	53	27	10	22	40	1.86
7449440--7449485	24	1.9	24	90	0	74	19	15	28	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136