genome.fa.s10.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  34  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11145336--11145443	54	2.0	54	85	3	146	27	24	18	29	1.98
11145316--11145455	27	5.2	28	72	15	91	31	23	18	26	1.97
11155195--11155466	43	6.3	43	89	0	391	27	32	17	22	1.96
11155216--11155498	129	2.2	129	84	3	338	30	31	16	21	1.96
11158003--11158187	41	4.5	41	87	4	275	29	24	23	23	1.99
11158246--11158374	40	3.2	40	82	3	163	22	20	21	35	1.96
11161177--11161217	21	2.0	21	90	0	64	29	2	7	60	1.36
11165701--11165817	9	12.6	9	69	16	69	71	2	5	19	1.18
11165716--11165786	20	3.5	20	74	16	67	73	2	5	18	1.16
11171659--11171868	27	7.7	27	81	5	226	24	16	19	39	1.92
11171659--11171868	81	2.6	82	89	0	314	24	16	19	39	1.92
11173855--11173901	9	5.2	9	80	17	53	34	8	0	57	1.29
11173850--11173901	25	2.0	27	88	7	81	32	7	0	59	1.26
11174982--11175020	15	2.5	16	83	4	53	82	2	7	7	0.94
11191099--11191130	5	6.4	5	100	0	64	21	0	0	78	0.76
11193351--11193485	72	1.9	72	81	7	166	33	16	25	24	1.96
11200001--11200076	37	2.1	37	100	0	152	27	13	15	43	1.84
11202314--11202354	11	3.7	11	80	0	55	56	9	14	19	1.66
11206004--11206088	45	1.9	44	90	2	134	41	20	15	23	1.90
11206307--11206394	40	2.2	41	87	6	126	43	19	7	29	1.79
11206335--11206394	20	2.9	22	71	19	65	46	21	5	26	1.72
11207173--11207221	18	2.8	17	72	6	53	16	8	0	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11209603--11209630	2	14.0	2	100	0	56	50	0	0	50	1.00
11210050--11210181	66	2.0	66	95	0	237	43	6	12	37	1.68
11210442--11210498	21	2.8	20	84	5	62	33	8	5	52	1.55
11211330--11211357	14	2.0	14	100	0	56	50	7	7	35	1.57
11216407--11216455	16	3.1	16	84	0	71	61	2	12	24	1.42
11216851--11216889	20	1.9	21	89	5	62	5	15	0	79	0.90
11223936--11224016	42	1.9	42	92	0	135	20	27	37	14	1.92
11224095--11224151	19	3.3	19	68	27	63	31	3	24	40	1.72
11224093--11224155	32	2.0	32	100	0	126	34	3	22	39	1.70
11227766--11227809	22	2.0	22	100	0	88	31	9	13	45	1.75
11238830--11238983	44	3.5	44	73	5	166	26	25	17	29	1.97
11238802--11238978	89	2.0	89	92	2	293	27	24	16	31	1.97
11239039--11239493	46	9.9	45	86	2	595	30	27	16	26	1.97
11242679--11242725	7	7.0	7	85	9	71	14	17	0	68	1.22
11242682--11242724	13	3.3	13	87	6	61	13	16	0	69	1.19
11242679--11242725	20	2.3	20	96	0	85	14	17	0	68	1.22
11243546--11243600	26	2.2	26	83	9	69	7	1	12	78	1.04
11243554--11243607	12	4.2	13	82	17	69	5	0	12	81	0.85
11243559--11243609	14	3.8	13	78	5	57	3	0	11	84	0.75
11243554--11243607	25	2.1	26	90	10	85	5	0	12	81	0.85
11247962--11247988	4	6.8	4	100	0	54	77	0	0	22	0.76
11248826--11248858	3	11.0	3	93	0	57	33	36	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11253708--11253758	23	2.1	25	82	10	61	41	3	5	49	1.45
11254155--11254297	64	2.2	64	93	2	241	25	24	14	34	1.94
11261617--11261660	23	2.0	23	86	4	63	45	13	6	34	1.70
11262938--11262972	17	2.1	17	100	0	70	51	17	11	20	1.75
11268866--11268890	13	1.9	13	100	0	50	28	24	32	16	1.96
11269927--11269977	25	2.0	25	85	7	68	7	31	15	45	1.75
11269970--11270022	25	2.1	25	85	0	70	7	16	13	62	1.53
11269983--11270025	20	2.2	20	91	0	68	6	9	13	69	1.35
11270912--11270999	43	2.0	43	88	0	131	47	3	10	38	1.54
11271010--11271047	17	2.2	18	85	4	51	42	7	10	39	1.69
11271711--11271739	9	3.3	9	95	4	51	65	0	0	34	0.93
11280991--11281076	34	2.5	34	90	0	127	18	10	36	34	1.85
11280997--11281088	34	2.7	34	85	6	98	19	11	34	33	1.89
11285715--11285762	14	3.1	14	78	18	51	25	0	8	66	1.19
11285691--11285754	18	3.5	19	77	10	62	23	0	7	68	1.15
11293316--11293360	22	2.1	21	91	4	72	46	0	11	42	1.39
11294321--11294353	17	1.9	17	93	0	57	51	18	0	30	1.46
11299763--11299878	25	4.6	25	69	4	81	38	20	21	18	1.93
11303574--11303632	29	2.0	29	86	0	82	18	33	25	22	1.96
11304842--11304958	29	4.0	29	80	7	128	33	13	28	24	1.93
11304841--11305049	30	7.0	30	74	6	142	33	14	26	24	1.94
11304999--11305078	30	2.6	30	82	2	97	42	11	25	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11306065--11306492	213	2.0	213	98	0	820	25	23	28	23	2.00
11308850--11308888	19	2.1	19	90	0	60	38	28	0	33	1.57
11311187--11311236	24	2.1	24	84	0	64	28	12	16	44	1.83
11319802--11319851	13	3.6	14	71	17	50	58	12	0	30	1.34
11324198--11324306	28	3.9	28	83	4	121	30	23	19	26	1.98
11324412--11324477	28	2.4	28	89	0	96	36	15	13	34	1.87
11324438--11324477	14	2.9	14	76	0	53	37	17	15	30	1.90
11327481--11327541	25	2.4	25	86	0	77	29	21	29	19	1.98
11327560--11327625	25	2.6	25	79	9	80	37	18	24	19	1.93
11328220--11328290	21	3.2	21	64	21	54	36	21	1	40	1.62
11328206--11328299	46	2.0	46	97	0	179	39	20	3	37	1.69
11330528--11330629	39	2.6	39	81	6	116	35	3	16	44	1.67
11334256--11334302	22	2.2	22	84	3	60	25	0	0	74	0.82
11334266--11334304	13	2.9	13	84	3	51	25	0	0	74	0.82
11334506--11334537	15	2.1	16	88	11	50	28	3	0	68	1.04
11337632--11337704	33	2.2	33	83	7	87	53	16	4	26	1.61
11339679--11339889	94	2.2	94	81	1	244	23	25	17	33	1.96
11346890--11346984	17	5.4	18	68	23	60	47	0	3	49	1.17
11357365--11357441	39	2.0	39	97	0	145	10	3	38	46	1.56
11357798--11358149	173	2.0	173	90	0	551	29	23	18	28	1.98
11357918--11358322	216	1.9	217	88	0	623	28	24	19	27	1.98
11357812--11358523	44	16.5	44	67	13	300	27	25	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11358309--11358578	90	3.1	90	70	20	295	26	23	21	28	1.99
11358245--11358580	168	2.0	168	94	1	593	26	25	19	28	1.99
11358427--11358578	45	3.4	44	77	10	130	26	22	22	28	1.99
11358650--11359049	43	9.3	43	85	3	511	22	26	22	29	1.99
11358651--11359048	85	4.7	85	87	2	548	22	25	21	29	1.99
11358650--11359049	128	3.1	128	88	2	588	22	26	22	29	1.99
11358650--11359049	171	2.3	171	88	2	597	22	26	22	29	1.99
11360258--11360286	7	4.3	7	91	8	51	13	13	0	72	1.13
11361135--11361281	58	2.6	57	75	16	148	10	12	4	73	1.22
11361204--11361228	6	4.2	6	100	0	50	16	16	0	68	1.22
11361204--11361246	18	2.4	18	84	0	50	16	11	6	65	1.46
11361206--11361295	12	7.5	12	76	8	58	12	7	6	73	1.25
11366237--11366273	19	1.9	19	88	0	56	10	2	8	78	1.06
11375649--11375712	21	3.0	21	80	13	60	45	0	1	53	1.10
11375649--11375712	22	3.0	22	82	13	64	45	0	1	53	1.10
11390628--11390727	1	100.0	1	69	0	65	85	6	4	5	0.84
11390628--11390720	27	3.5	26	81	11	93	84	5	4	5	0.85
11390628--11390727	23	4.1	24	78	10	96	85	6	4	5	0.84
11390633--11390727	33	2.8	32	90	7	145	84	6	4	5	0.88
11390630--11390727	8	11.8	8	75	16	83	84	6	4	5	0.86
11392152--11392197	24	1.9	24	86	0	65	34	6	26	32	1.82
11392474--11393019	44	12.7	43	71	9	328	30	22	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11392512--11392966	85	5.3	83	71	9	315	30	22	20	26	1.99
11392465--11393019	129	4.3	129	91	0	860	30	22	20	25	1.98
11395950--11395994	24	2.0	23	82	8	56	44	8	0	46	1.34
11399989--11400110	55	2.2	55	86	0	181	32	27	15	23	1.95
11404073--11404137	26	2.5	27	80	5	62	16	21	24	36	1.94
11404220--11404318	24	4.1	24	71	16	78	20	20	18	41	1.91
11404223--11404274	23	2.2	24	82	3	61	23	21	17	38	1.93
11411836--11411867	12	2.6	13	85	14	50	37	0	6	56	1.25
11414660--11415457	51	15.7	51	84	3	956	27	15	26	29	1.96
11414660--11415457	102	7.9	102	94	1	1232	27	15	26	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136