genome.fa.s10.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  50  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16531379--16531413	18	1.9	18	94	0	61	11	8	8	71	1.31
16537968--16537993	4	6.5	4	100	0	52	0	0	23	76	0.78
16539348--16541088	521	3.4	515	88	3	2523	27	13	24	34	1.93
16558997--16559050	27	2.0	27	96	0	99	24	40	9	25	1.85
16561261--16561286	11	2.4	11	100	0	52	30	0	7	61	1.24
16563013--16563044	15	2.1	15	94	0	55	37	3	6	53	1.42
16563262--16563292	16	1.9	16	93	0	53	51	12	6	29	1.65
16565016--16565074	24	2.4	25	72	13	59	54	6	5	33	1.49
16565502--16565535	17	2.1	17	88	5	52	61	20	8	8	1.52
16568626--16568652	3	9.0	3	100	0	54	33	0	0	66	0.92
16569287--16569318	16	2.0	16	100	0	64	50	0	25	25	1.50
16570355--16570412	15	3.9	15	77	8	55	34	10	0	55	1.34
16570353--16570411	30	2.0	30	82	0	73	35	11	0	52	1.38
16571544--16571687	7	20.3	7	71	8	85	22	1	27	47	1.59
16571544--16571638	21	4.5	21	82	0	118	22	1	28	48	1.57
16571607--16571683	36	2.1	36	88	4	111	27	1	24	46	1.60
16574089--16574132	20	2.1	22	87	8	65	40	9	0	50	1.34
16574735--16574921	9	20.8	9	73	14	120	46	18	0	34	1.50
16574720--16574919	58	3.5	60	88	7	276	46	18	0	35	1.50
16574742--16574921	52	3.3	52	86	6	227	46	18	0	34	1.50
16574720--16574919	61	3.5	60	87	9	269	46	18	0	35	1.50
16580740--16581004	43	6.2	43	83	2	311	28	18	22	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16580740--16581025	85	3.3	86	81	5	339	29	18	22	30	1.97
16581564--16581603	20	2.0	20	85	0	53	25	0	5	70	1.08
16589430--16589484	24	2.3	24	74	0	56	12	18	0	69	1.19
16592214--16592257	21	2.2	20	84	8	54	22	31	18	27	1.97
16596969--16597030	24	2.6	24	94	0	106	41	0	17	40	1.50
16598352--16598389	19	2.0	19	85	10	51	42	0	15	42	1.47
16599748--16599783	17	2.0	19	89	10	58	44	0	27	27	1.55
16599865--16599996	23	6.0	23	82	7	148	15	21	24	39	1.91
16599877--16599996	46	2.7	45	84	7	167	14	20	25	40	1.90
16604947--16605002	27	2.1	27	86	0	76	41	14	12	32	1.83
16613336--16613367	2	16.0	2	100	0	64	50	0	0	50	1.00
16613576--16613639	32	2.0	32	100	0	128	62	15	9	12	1.54
16613645--16613681	19	1.9	19	89	10	58	48	5	5	40	1.49
16616743--16616767	13	1.9	13	100	0	50	16	8	0	76	1.02
16618692--16618741	4	12.5	4	76	16	50	2	26	0	72	0.96
16618683--16618740	24	2.3	25	82	5	73	1	25	0	72	0.94
16625549--16625744	35	5.6	35	83	2	241	19	13	29	37	1.90
16625549--16625744	70	2.8	70	85	1	268	19	13	29	37	1.90
16655294--16655397	55	1.9	55	89	0	163	28	24	17	29	1.97
16659502--16659531	15	2.0	15	93	0	51	33	23	20	23	1.97
16662197--16662246	20	2.2	24	86	13	72	66	0	10	24	1.22
16670552--16670618	18	3.7	18	82	6	82	35	19	10	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16678103--16678135	16	1.9	18	88	11	52	66	0	0	33	0.92
16678592--16678635	18	2.3	20	85	11	58	63	2	0	34	1.07
16678875--16678920	14	2.9	16	79	20	60	26	0	4	69	1.07
16682718--16682929	45	4.7	45	85	2	248	25	16	24	33	1.96
16682722--16682953	45	5.2	45	84	6	231	25	15	25	33	1.96
16684192--16684285	44	2.1	45	90	2	145	25	15	21	37	1.93
16684192--16684315	44	2.8	44	81	1	140	24	15	18	41	1.89
16685183--16685209	12	2.2	12	100	0	54	74	11	0	14	1.08
16685348--16685399	15	3.2	15	73	19	50	44	0	1	53	1.11
16686206--16686240	18	1.9	18	88	0	52	31	17	17	34	1.93
16686259--16686312	18	3.1	18	86	2	74	25	14	18	40	1.89
16688730--16688761	16	2.0	16	93	0	55	43	15	0	40	1.47
16688941--16689177	50	4.7	50	84	0	303	35	24	14	25	1.94
16695479--16695515	16	2.3	16	95	0	65	27	13	13	45	1.81
16696226--16696257	16	2.0	16	93	0	55	46	18	0	34	1.49
16696426--16696574	50	3.0	50	85	0	199	36	25	13	24	1.92
16696442--16696597	50	3.1	48	77	12	131	37	25	12	24	1.91
16701094--16701163	25	2.8	25	76	8	70	30	25	17	27	1.97
16708111--16708157	21	2.2	21	85	7	60	44	8	8	38	1.65
16708459--16708516	5	11.2	5	82	14	73	1	18	1	77	0.94
16708464--16708515	27	1.9	27	88	7	79	1	19	1	76	0.97
16712210--16712247	1	38.0	1	100	0	76	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16717562--16717598	20	1.9	18	89	10	56	48	5	8	37	1.56
16723273--16723316	21	2.0	22	95	4	81	50	4	9	36	1.55
16723609--16723672	13	4.9	13	76	14	60	37	18	7	35	1.80
16723840--16723887	13	3.7	13	91	5	71	41	27	8	22	1.82
16724286--16724362	7	11.0	7	79	8	68	32	31	1	35	1.66
16726443--16726482	21	1.9	21	100	0	80	37	5	32	25	1.77
16726442--16726489	21	2.3	21	88	0	78	33	6	29	31	1.82
16732532--16732567	18	2.0	18	100	0	72	33	5	5	55	1.46
16732533--16732573	18	2.3	18	91	4	66	36	4	4	53	1.44
16740484--16740539	24	2.3	24	93	0	94	39	7	7	46	1.59
16747983--16748034	24	2.2	24	92	0	86	36	3	7	51	1.49
16748383--16748420	5	7.6	5	93	0	67	42	0	15	42	1.47
16748382--16748420	20	2.0	20	100	0	78	41	0	15	43	1.46
16749720--16749786	25	2.6	25	84	13	84	35	16	17	29	1.92
16754183--16754218	16	2.2	16	100	0	72	11	25	52	11	1.69
16754342--16754460	27	4.4	27	81	4	134	43	19	16	20	1.88
16754343--16754460	54	2.2	54	90	0	182	43	19	16	20	1.88
16754343--16754490	54	2.7	54	82	2	136	41	18	18	22	1.91
16758384--16758431	15	3.2	16	77	11	57	68	0	0	31	0.90
16758399--16759271	436	2.0	437	99	0	1739	44	10	10	34	1.73
16761457--16761528	33	2.2	33	83	11	87	50	15	5	29	1.66
16764704--16764737	3	11.3	3	93	0	59	64	0	2	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16766196--16766273	31	2.5	31	83	6	88	53	2	2	41	1.28
16769400--16769461	31	2.0	32	83	3	81	45	14	3	37	1.61
16777952--16777995	23	1.9	23	85	0	61	18	47	11	22	1.80
16779940--16779984	21	2.1	22	88	8	67	40	0	8	51	1.33
16788953--16789292	126	2.7	126	91	0	590	31	18	23	26	1.97
16795355--16795397	18	2.4	18	88	0	59	44	9	27	18	1.80
16797232--16797320	22	3.7	22	70	18	70	44	2	29	23	1.65
16797229--16797328	51	1.9	52	91	2	166	46	2	28	24	1.64
16797289--16797330	11	3.9	11	87	3	59	50	0	28	21	1.49
16801956--16801984	2	14.5	2	100	0	58	48	0	0	51	1.00
16808360--16808410	24	2.2	24	82	3	59	45	5	3	45	1.46
16809586--16809616	1	31.0	1	100	0	62	100	0	0	0	0.00
16809892--16809933	22	1.9	22	95	0	75	59	2	2	35	1.23
16818286--16818338	26	2.0	26	85	0	70	60	9	1	28	1.38
16820221--16820273	26	2.0	26	85	0	70	60	9	1	28	1.38
16821438--16821536	38	2.6	38	85	3	128	47	9	5	38	1.57
16826268--16826309	22	1.9	22	90	0	66	33	16	28	21	1.95
16826261--16826347	25	3.6	25	83	6	108	40	16	24	19	1.91
16829258--16829708	224	2.0	224	98	0	866	31	15	21	32	1.94
16830435--16830517	38	2.2	37	85	6	105	48	6	4	40	1.49
16831357--16831403	21	2.3	20	82	10	51	36	17	8	38	1.80
16835220--16835275	21	2.7	21	88	0	85	23	8	39	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16836521--16836573	27	2.0	27	92	0	88	47	13	15	24	1.81
16844794--16844843	26	1.9	26	95	0	91	52	4	4	40	1.39
16848865--16848986	38	3.2	38	85	0	172	35	26	16	22	1.95
16850030--16850055	13	2.0	13	100	0	52	38	0	0	61	0.96
16850118--16850153	16	2.2	16	90	0	54	69	0	27	2	1.02
16851202--16851287	21	4.0	22	80	8	106	15	22	25	37	1.93
16851201--16851287	44	2.0	41	84	6	111	16	21	25	36	1.94
16852827--16852895	3	22.7	3	97	2	129	66	0	33	0	0.92
16853892--16853918	13	2.1	13	100	0	54	77	0	22	0	0.76
16854212--16854279	21	3.3	21	68	15	61	32	8	20	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136