genome.fa.s10.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  95  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31758818--31758870	19	2.6	21	77	14	58	45	7	15	32	1.74
31763952--31763984	17	1.9	17	88	11	50	60	0	9	30	1.27
31763951--31764056	9	11.4	9	71	13	63	65	2	3	28	1.24
31765822--31765982	72	2.2	73	82	3	202	45	7	10	36	1.67
31772223--31772260	3	12.7	3	100	0	76	31	0	0	68	0.90
31783416--31783471	28	2.0	28	85	0	76	50	5	16	28	1.67
31787843--31788001	51	3.1	51	79	3	160	25	27	13	33	1.93
31790253--31790277	7	3.6	7	100	0	50	32	12	28	28	1.92
31798402--31798459	20	2.8	21	84	10	66	55	3	1	39	1.27
31798427--31798490	31	2.1	31	90	0	101	57	0	1	40	1.08
31798448--31798487	20	2.0	20	90	4	64	55	0	0	45	0.99
31798441--31798490	12	4.6	11	74	20	52	58	0	2	40	1.10
31798453--31798492	20	2.1	19	86	9	55	62	0	0	37	0.95
31800488--31800536	24	2.1	22	85	7	62	24	0	2	73	0.94
31803999--31804272	136	2.0	137	99	0	541	38	8	11	40	1.73
31807473--31807531	30	2.0	30	83	9	77	30	1	10	57	1.42
31807882--31807918	19	1.9	19	100	0	74	43	13	10	32	1.79
31807931--31807982	3	17.3	3	100	0	104	32	0	0	67	0.91
31811233--31811260	5	5.6	5	100	0	56	21	21	35	21	1.96
31814886--31814922	13	2.7	14	83	8	58	70	2	0	27	1.01
31820892--31820948	26	2.2	26	81	9	62	0	28	5	66	1.13
31824918--31824991	33	2.2	33	83	7	96	41	10	10	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31833060--31833117	30	2.0	30	83	10	75	37	8	20	32	1.83
31854122--31854160	17	2.3	17	90	0	60	46	25	15	12	1.81
31855488--31855528	19	2.1	20	86	4	57	39	0	0	60	0.96
31855683--31855770	10	9.0	9	70	21	54	34	5	2	57	1.34
31855683--31855782	20	5.1	19	75	18	73	34	6	3	57	1.39
31856139--31856164	12	2.2	12	100	0	52	7	15	30	46	1.74
31856233--31857399	114	10.3	114	96	1	2062	23	22	26	27	2.00
31857706--31858003	105	2.9	102	83	7	307	50	10	13	26	1.72
31857812--31858003	105	1.8	103	93	2	330	52	9	13	24	1.71
31858043--31858336	108	2.8	106	83	10	370	50	11	11	26	1.72
31861192--31861417	91	2.5	91	100	0	452	34	14	18	33	1.91
31861897--31861929	17	1.9	17	100	0	66	30	6	6	57	1.47
31862581--31862625	22	2.0	22	82	8	54	57	2	2	37	1.23
31862672--31862882	85	2.5	84	83	6	264	27	20	20	30	1.98
31862673--31862880	43	4.9	41	86	3	218	26	21	21	30	1.98
31864321--31864521	94	2.1	94	83	1	242	36	12	18	32	1.88
31875984--31876050	9	7.4	9	81	6	82	44	20	7	26	1.78
31875983--31876050	27	2.5	27	87	0	100	45	20	7	26	1.77
31879275--31879304	14	2.1	14	100	0	60	26	6	13	53	1.64
31888490--31888702	110	1.9	110	92	1	356	39	22	6	31	1.79
31902818--31903585	193	4.0	193	81	5	865	35	14	12	37	1.84
31902853--31903545	378	1.8	380	83	3	933	35	14	12	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31903772--31903814	20	2.2	20	86	0	59	67	2	6	23	1.27
31909022--31909410	194	2.0	195	99	0	771	36	11	12	40	1.79
31917917--31917947	3	10.3	3	100	0	62	0	32	0	67	0.91
31931026--31931234	55	3.8	55	98	0	400	37	13	18	30	1.89
31940452--31940497	23	2.0	23	83	8	58	63	6	4	26	1.38
31947269--31947329	30	2.0	30	83	3	77	44	1	13	40	1.53
31949852--31949962	55	2.0	55	94	0	195	30	10	15	43	1.81
31952710--31952758	22	2.4	21	83	10	57	73	0	20	6	1.04
31959180--31959231	16	3.3	15	74	15	52	67	1	1	28	1.12
31959179--31959235	30	1.9	30	89	7	89	66	1	1	29	1.12
31959181--31959243	15	4.2	15	75	15	51	63	1	4	30	1.24
31959473--31959544	24	3.0	23	78	9	74	45	2	0	51	1.15
31959473--31959528	23	2.5	23	82	8	62	46	1	0	51	1.11
31960568--31960631	33	2.0	32	87	9	94	20	32	0	46	1.51
31968175--31968274	51	1.9	52	90	6	159	44	6	11	39	1.64
31973655--31973938	43	6.7	43	85	6	337	22	19	27	30	1.98
31976596--31977974	458	3.0	457	93	0	2353	24	26	14	33	1.94
32009404--32009476	30	2.4	30	88	2	101	31	16	5	46	1.70
32013190--32013219	2	15.0	2	100	0	60	50	0	0	50	1.00
32013663--32013759	50	1.9	51	83	6	126	44	18	17	19	1.87
32013673--32013782	26	4.4	25	73	11	82	40	19	20	20	1.92
32015530--32015669	68	2.1	66	84	10	176	27	17	5	49	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32023689--32023834	54	2.6	53	84	8	168	43	10	11	34	1.75
32026539--32026638	51	1.9	52	90	6	159	44	6	11	39	1.64
32029823--32029859	14	2.6	14	95	0	65	16	59	8	16	1.59
32030682--32030714	5	6.6	5	96	0	57	33	0	0	66	0.92
32031273--32031325	25	2.1	25	89	6	81	39	3	7	49	1.49
32037163--32037191	14	2.1	14	100	0	58	48	17	20	13	1.81
32039080--32039129	22	2.2	23	89	3	75	30	10	18	42	1.82
32039633--32039692	18	3.3	18	85	0	84	31	28	15	25	1.95
32052241--32052279	18	2.1	18	85	4	51	53	7	0	38	1.30
32052258--32052295	19	2.0	19	90	10	60	52	10	0	36	1.36
32053726--32053784	21	2.8	20	80	14	57	55	3	0	40	1.16
32053767--32053792	11	2.4	11	100	0	52	61	0	0	38	0.96
32070345--32070516	72	2.4	72	85	7	231	55	13	5	25	1.58
32070956--32071003	18	2.7	18	96	0	87	39	12	12	35	1.81
32073573--32073616	23	1.9	23	95	0	79	50	18	29	2	1.59
32084920--32084958	19	2.1	19	85	4	53	46	15	0	38	1.46
32085465--32085523	31	1.9	31	100	0	118	23	23	1	50	1.58
32085359--32085798	218	2.0	218	97	0	835	32	20	8	38	1.83
32085827--32085917	22	4.0	22	74	13	62	36	19	24	19	1.95
32085867--32085927	25	2.4	25	97	0	113	42	18	19	19	1.89
32088624--32088653	16	1.9	16	93	6	53	60	3	0	36	1.14
32090926--32090986	18	3.3	18	76	13	52	49	1	1	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32097781--32097822	22	2.0	21	85	4	57	69	0	7	23	1.13
32106004--32106046	19	2.2	20	87	4	61	18	16	13	51	1.77
32108263--32108330	34	2.0	34	100	0	136	44	14	8	32	1.76
32108466--32108506	19	2.2	19	86	8	57	48	4	2	43	1.37
32116940--32116990	19	2.8	18	85	14	61	74	1	3	19	1.07
32117380--32117417	20	1.9	20	94	0	67	36	0	2	60	1.11
32117424--32117464	19	2.1	19	86	4	55	58	9	0	31	1.31
32117554--32117599	20	2.3	20	85	3	58	28	2	10	58	1.43
32118568--32118596	4	7.5	4	92	7	51	0	20	0	79	0.74
32126008--32126084	21	3.7	21	70	19	63	62	1	3	32	1.22
32127362--32127391	13	2.2	14	94	5	53	13	0	13	73	1.10
32133206--32133266	25	2.4	26	83	8	81	39	8	18	34	1.80
32138890--32139007	58	2.0	59	96	1	220	40	19	21	18	1.91
32155893--32155941	24	2.0	25	84	11	66	8	30	4	57	1.47
32161622--32162107	43	11.3	43	92	0	801	20	18	33	27	1.96
32164287--32164329	21	2.0	22	86	4	61	58	11	2	27	1.46
32167204--32167228	12	2.1	12	100	0	50	48	8	0	44	1.32
32169362--32170811	44	32.9	44	66	15	294	28	21	18	31	1.97
32169517--32169633	46	2.6	44	83	2	135	30	23	18	27	1.98
32169703--32169771	33	2.1	34	94	2	122	26	21	20	31	1.98
32169528--32169932	208	1.9	209	94	0	713	29	21	19	29	1.98
32169951--32170818	175	5.0	175	91	0	1351	29	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32169464--32170818	350	3.9	350	83	5	1672	29	21	18	31	1.97
32170817--32171076	87	3.0	87	86	2	342	26	24	20	28	1.99
32172203--32172249	21	2.2	21	84	0	58	27	34	10	27	1.90
32172344--32172391	20	2.6	20	87	12	68	12	10	0	77	1.00
32172344--32172392	8	5.4	9	83	13	57	12	10	0	77	0.99
32173250--32173313	23	2.9	21	86	13	85	14	1	12	71	1.21
32173258--32173312	17	3.2	17	71	21	51	14	0	12	72	1.12
32173267--32173312	12	3.8	13	72	21	55	15	0	13	71	1.14
32173263--32173315	25	2.2	26	83	16	69	13	0	11	75	1.05
32173252--32173316	22	3.0	21	77	20	62	13	1	13	70	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136